RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 GPATCH8Q9UKJ3 1502 aaKnown RBP18.2■□□□□ 0.5
CLCNKA-206ENST00000491433 HNRNPMP52272 730 aaKnown RBP eCLIP18.2■□□□□ 0.5
CLCNKA-206ENST00000491433 INO80Q9ULG1 1556 aaPredicted RBP18.2■□□□□ 0.5
CLCNKA-206ENST00000491433 POLR1AO95602 1720 aaPredicted RBP18.2■□□□□ 0.5
CLCNKA-206ENST00000491433 LRRC7Q96NW7 1537 aa18.19■□□□□ 0.5
CLCNKA-206ENST00000491433 ADGBQ8N7X0 1667 aa18.19■□□□□ 0.5
CLCNKA-206ENST00000491433 GGT6Q6P531 493 aa18.18■□□□□ 0.5
CLCNKA-206ENST00000491433 TRIM52Q96A61 297 aa18.18■□□□□ 0.5
CLCNKA-206ENST00000491433 CFDP1Q9UEE9 299 aaPredicted RBP18.18■□□□□ 0.5
CLCNKA-206ENST00000491433 ANKLE2Q86XL3 938 aa18.17■□□□□ 0.5
CLCNKA-206ENST00000491433 DNMT1P26358 1616 aaKnown RBP18.16■□□□□ 0.5
CLCNKA-206ENST00000491433 CCNB3Q8WWL7 1395 aa18.16■□□□□ 0.5
CLCNKA-206ENST00000491433 SYNMO15061 1565 aa18.14■□□□□ 0.49
CLCNKA-206ENST00000491433 FOXD1Q16676 465 aa18.14■□□□□ 0.49
CLCNKA-206ENST00000491433 FAM135BQ49AJ0 1406 aa18.13■□□□□ 0.49
CLCNKA-206ENST00000491433 NPHP4O75161 1426 aaPredicted RBP18.12■□□□□ 0.49
CLCNKA-206ENST00000491433 ZNF772Q68DY9 489 aaPredicted RBP18.11■□□□□ 0.49
CLCNKA-206ENST00000491433 FAM135AQ9P2D6 1515 aa18.11■□□□□ 0.49
CLCNKA-206ENST00000491433 RTEL1-TNFRSF6BF6WH68 1400 aa18.1■□□□□ 0.49
CLCNKA-206ENST00000491433 MED14O60244 1454 aa18.08■□□□□ 0.49
CLCNKA-206ENST00000491433 MTUS2Q5JR59 1369 aa18.08■□□□□ 0.49
CLCNKA-206ENST00000491433 ZRANB1Q9UGI0 708 aa18.08■□□□□ 0.48
CLCNKA-206ENST00000491433 TNRQ92752 1358 aa18.07■□□□□ 0.48
CLCNKA-206ENST00000491433 DHX29Q7Z478 1369 aaKnown RBP18.06■□□□□ 0.48
CLCNKA-206ENST00000491433 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLCNKA-206ENST00000491433 RXRBP28702 533 aa18.05■□□□□ 0.48
CLCNKA-206ENST00000491433 CHIC1Q5VXU3 224 aa18.05■□□□□ 0.48
CLCNKA-206ENST00000491433 THEMISQ8N1K5 641 aaPredicted RBP18.05■□□□□ 0.48
CLCNKA-206ENST00000491433 PZPP20742 1482 aa18.04■□□□□ 0.48
CLCNKA-206ENST00000491433 KDM5DQ9BY66 1539 aa18.03■□□□□ 0.48
CLCNKA-206ENST00000491433 CDK12Q9NYV4 1490 aaPredicted RBP18.02■□□□□ 0.48
CLCNKA-206ENST00000491433 DEPDC5O75140 1603 aa18.02■□□□□ 0.48
CLCNKA-206ENST00000491433 RSPH4AQ5TD94 716 aa18.02■□□□□ 0.48
CLCNKA-206ENST00000491433 NLRP1Q9C000 1473 aa18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 MBD5Q9P267 1494 aa18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 KIF3BO15066 747 aa18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 MEX3CQ5U5Q3 659 aaKnown RBP18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 STRCP1A6NGW2 1772 aa18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 JCADQ9P266 1359 aa18.01■□□□□ 0.47
CLCNKA-206ENST00000491433 TIAM1Q13009 1591 aa18■□□□□ 0.47
CLCNKA-206ENST00000491433 EHBP1L1Q8N3D4 1523 aa18■□□□□ 0.47
CLCNKA-206ENST00000491433 IQGAP1P46940 1657 aa17.99■□□□□ 0.47
CLCNKA-206ENST00000491433 WASHC2CQ9Y4E1 1318 aa17.99■□□□□ 0.47
CLCNKA-206ENST00000491433 UGGT1Q9NYU2 1555 aa17.99■□□□□ 0.47
CLCNKA-206ENST00000491433 RBM33Q96EV2 1170 aaKnown RBP17.98■□□□□ 0.47
CLCNKA-206ENST00000491433 MIA2Q96PC5 1412 aa17.98■□□□□ 0.47
CLCNKA-206ENST00000491433 CCDC141Q6ZP82 1450 aa17.97■□□□□ 0.47
CLCNKA-206ENST00000491433 FBXO31Q5XUX0 539 aaPredicted RBP17.97■□□□□ 0.47
CLCNKA-206ENST00000491433 ZNF644Q9H582 1327 aaPredicted RBP17.97■□□□□ 0.47
CLCNKA-206ENST00000491433 CEP162Q5TB80 1403 aa17.96■□□□□ 0.47
CLCNKA-206ENST00000491433 IFFO2Q5TF58 517 aa17.95■□□□□ 0.46
CLCNKA-206ENST00000491433 SETBP1Q9Y6X0 1596 aa17.94■□□□□ 0.46
CLCNKA-206ENST00000491433 ROBO1Q9Y6N7 1651 aa17.93■□□□□ 0.46
CLCNKA-206ENST00000491433 SPATA31A6Q5VVP1 1343 aa17.92■□□□□ 0.46
CLCNKA-206ENST00000491433 ZC3H13Q5T200 1668 aaKnown RBP17.91■□□□□ 0.46
CLCNKA-206ENST00000491433 TSPY4P0CV99 314 aa17.91■□□□□ 0.46
CLCNKA-206ENST00000491433 TSPY10P0CW01 314 aa17.91■□□□□ 0.46
CLCNKA-206ENST00000491433 CAMSAP2Q08AD1 1489 aa17.89■□□□□ 0.45
CLCNKA-206ENST00000491433 LRRC9Q6ZRR7 1453 aa17.89■□□□□ 0.45
CLCNKA-206ENST00000491433 LRP6O75581 1613 aa17.88■□□□□ 0.45
CLCNKA-206ENST00000491433 NUTM2BA6NNL0 878 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-206ENST00000491433 NUTM2EB1AL46 878 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-206ENST00000491433 NUTM2DQ5VT03 806 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-206ENST00000491433 NUTM2AQ8IVF1 878 aaPredicted RBP17.88■□□□□ 0.45
CLCNKA-206ENST00000491433 ARHGEF5Q12774 1597 aa17.87■□□□□ 0.45
CLCNKA-206ENST00000491433 PHLPP1O60346 1717 aa17.84■□□□□ 0.45
CLCNKA-206ENST00000491433 NCOA2Q15596 1464 aa17.84■□□□□ 0.45
CLCNKA-206ENST00000491433 EIF2AK4Q9P2K8 1649 aaKnown RBP17.83■□□□□ 0.45
CLCNKA-206ENST00000491433 RGS12O14924 1447 aa17.83■□□□□ 0.45
CLCNKA-206ENST00000491433 ATAD2Q6PL18 1390 aa17.83■□□□□ 0.45
CLCNKA-206ENST00000491433 XIRP1Q702N8 1843 aaKnown RBP17.83■□□□□ 0.44
CLCNKA-206ENST00000491433 ABCC3O15438 1527 aa17.82■□□□□ 0.44
CLCNKA-206ENST00000491433 FGD6Q6ZV73 1430 aa17.82■□□□□ 0.44
CLCNKA-206ENST00000491433 ERVK-7P63135 1459 aa17.82■□□□□ 0.44
CLCNKA-206ENST00000491433 TMEM94Q12767 1356 aa17.81■□□□□ 0.44
CLCNKA-206ENST00000491433 MAST1Q9Y2H9 1570 aa17.8■□□□□ 0.44
CLCNKA-206ENST00000491433 UBR1Q8IWV7 1749 aa17.8■□□□□ 0.44
CLCNKA-206ENST00000491433 SCAF11Q99590 1463 aaKnown RBP17.8■□□□□ 0.44
CLCNKA-206ENST00000491433 RBM6P78332 1123 aaKnown RBP17.77■□□□□ 0.44
CLCNKA-206ENST00000491433 EID1Q9Y6B2 187 aa17.77■□□□□ 0.44
CLCNKA-206ENST00000491433 CFAP65Q6ZU64 1925 aaKnown RBP17.76■□□□□ 0.43
CLCNKA-206ENST00000491433 SLAIN2Q9P270 581 aa17.76■□□□□ 0.43
CLCNKA-206ENST00000491433 SLIT1O75093 1534 aa17.76■□□□□ 0.43
CLCNKA-206ENST00000491433 AFF2P51816 1311 aa17.75■□□□□ 0.43
CLCNKA-206ENST00000491433 TXNDC2Q86VQ3 553 aa17.75■□□□□ 0.43
CLCNKA-206ENST00000491433 COL16A1Q07092 1604 aaPredicted RBP17.75■□□□□ 0.43
CLCNKA-206ENST00000491433 CEP152O94986 1710 aa17.75■□□□□ 0.43
CLCNKA-206ENST00000491433 ARHGAP23Q9P227 1491 aa17.75■□□□□ 0.43
CLCNKA-206ENST00000491433 DUOX2Q9NRD8 1548 aa17.72■□□□□ 0.43
CLCNKA-206ENST00000491433 CCDC125Q86Z20 511 aa17.72■□□□□ 0.43
CLCNKA-206ENST00000491433 LRP5O75197 1615 aa17.72■□□□□ 0.43
CLCNKA-206ENST00000491433 MROH1Q8NDA8 1641 aa17.72■□□□□ 0.43
CLCNKA-206ENST00000491433 ARHGAP31Q2M1Z3 1444 aa17.72■□□□□ 0.43
CLCNKA-206ENST00000491433 MSH6P52701 1360 aa17.71■□□□□ 0.43
CLCNKA-206ENST00000491433 PROSER2Q86WR7 435 aaPredicted RBP17.71■□□□□ 0.43
CLCNKA-206ENST00000491433 MAP3K1Q13233 1512 aa17.71■□□□□ 0.43
CLCNKA-206ENST00000491433 LTKP29376 864 aa17.7■□□□□ 0.42
CLCNKA-206ENST00000491433 NGLY1Q96IV0 654 aa17.7■□□□□ 0.42
CLCNKA-206ENST00000491433 QTRT2Q9H974 415 aaKnown RBP17.7■□□□□ 0.42
CLCNKA-206ENST00000491433 YY1P25490 414 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms