RNA–Protein interactions for RNA: ENST00000488186.5

C9orf3-219, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-219ENST00000488186 MROH2AA6NES4 1674 aa23.76■■□□□ 1.39
C9orf3-219ENST00000488186 PTPRKQ15262 1439 aa23.76■■□□□ 1.39
C9orf3-219ENST00000488186 NCOA1Q15788 1441 aa23.76■■□□□ 1.39
C9orf3-219ENST00000488186 ERBINQ96RT1 1412 aa23.72■■□□□ 1.39
C9orf3-219ENST00000488186 RNF17Q9BXT8 1623 aaKnown RBP23.71■■□□□ 1.39
C9orf3-219ENST00000488186 ROCK1Q13464 1354 aa23.71■■□□□ 1.39
C9orf3-219ENST00000488186 C3P01024 1663 aa23.67■■□□□ 1.38
C9orf3-219ENST00000488186 ZMYM3Q14202 1370 aa23.65■■□□□ 1.38
C9orf3-219ENST00000488186 PLPPR3Q6T4P5 718 aa23.65■■□□□ 1.38
C9orf3-219ENST00000488186 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.65■■□□□ 1.38
C9orf3-219ENST00000488186 CLTCQ00610 1675 aaKnown RBP23.64■■□□□ 1.38
C9orf3-219ENST00000488186 NPATQ14207 1427 aa23.64■■□□□ 1.37
C9orf3-219ENST00000488186 ANKRD50Q9ULJ7 1429 aa23.64■■□□□ 1.37
C9orf3-219ENST00000488186 KDM5DQ9BY66 1539 aa23.64■■□□□ 1.37
C9orf3-219ENST00000488186 WASHC2CQ9Y4E1 1318 aa23.62■■□□□ 1.37
C9orf3-219ENST00000488186 ZC3H13Q5T200 1668 aaKnown RBP23.62■■□□□ 1.37
C9orf3-219ENST00000488186 DEPDC5O75140 1603 aa23.61■■□□□ 1.37
C9orf3-219ENST00000488186 MROH1Q8NDA8 1641 aa23.6■■□□□ 1.37
C9orf3-219ENST00000488186 PRDM15P57071 1507 aaPredicted RBP23.59■■□□□ 1.37
C9orf3-219ENST00000488186 CEBPAP49715 358 aaPredicted RBP23.59■■□□□ 1.37
C9orf3-219ENST00000488186 KANK1Q14678 1352 aa23.59■■□□□ 1.37
C9orf3-219ENST00000488186 PREX1Q8TCU6 1659 aa23.58■■□□□ 1.37
C9orf3-219ENST00000488186 LMTK3Q96Q04 1460 aa23.57■■□□□ 1.36
C9orf3-219ENST00000488186 ABCC3O15438 1527 aa23.54■■□□□ 1.36
C9orf3-219ENST00000488186 PZPP20742 1482 aa23.54■■□□□ 1.36
C9orf3-219ENST00000488186 NAIPQ13075 1403 aa23.53■■□□□ 1.36
C9orf3-219ENST00000488186 VWDEQ8N2E2 1590 aa23.52■■□□□ 1.36
C9orf3-219ENST00000488186 HFM1A2PYH4 1435 aa23.52■■□□□ 1.36
C9orf3-219ENST00000488186 ARHGAP31Q2M1Z3 1444 aa23.51■■□□□ 1.35
C9orf3-219ENST00000488186 UHRF1BP1Q6BDS2 1440 aa23.5■■□□□ 1.35
C9orf3-219ENST00000488186 LMTK2Q8IWU2 1503 aa23.5■■□□□ 1.35
C9orf3-219ENST00000488186 TRIM26Q12899 539 aaPredicted RBP23.5■■□□□ 1.35
C9orf3-219ENST00000488186 TRIM52Q96A61 297 aa23.5■■□□□ 1.35
C9orf3-219ENST00000488186 NUP155O75694 1391 aa23.46■■□□□ 1.35
C9orf3-219ENST00000488186 CEP152O94986 1710 aa23.46■■□□□ 1.35
C9orf3-219ENST00000488186 CAMSAP1Q5T5Y3 1602 aa23.46■■□□□ 1.35
C9orf3-219ENST00000488186 GCC2Q8IWJ2 1684 aa23.45■■□□□ 1.34
C9orf3-219ENST00000488186 UNC13BO14795 1591 aa23.44■■□□□ 1.34
C9orf3-219ENST00000488186 SETD5Q9C0A6 1442 aa23.44■■□□□ 1.34
C9orf3-219ENST00000488186 ZNF142P52746 1687 aaPredicted RBP23.42■■□□□ 1.34
C9orf3-219ENST00000488186 ACIN1Q9UKV3 1341 aaKnown RBP23.42■■□□□ 1.34
C9orf3-219ENST00000488186 SPATA31D1Q6ZQQ2 1576 aa23.42■■□□□ 1.34
C9orf3-219ENST00000488186 MYO3AQ8NEV4 1616 aa23.4■■□□□ 1.34
C9orf3-219ENST00000488186 TNRQ92752 1358 aa23.4■■□□□ 1.34
C9orf3-219ENST00000488186 NLRP1Q9C000 1473 aa23.39■■□□□ 1.34
C9orf3-219ENST00000488186 RPRD2Q5VT52 1461 aaKnown RBP23.38■■□□□ 1.33
C9orf3-219ENST00000488186 FBXO31Q5XUX0 539 aaPredicted RBP23.38■■□□□ 1.33
C9orf3-219ENST00000488186 ERVK-7P63135 1459 aa23.37■■□□□ 1.33
C9orf3-219ENST00000488186 EFCAB6Q5THR3 1501 aa23.37■■□□□ 1.33
C9orf3-219ENST00000488186 A2ML1A8K2U0 1454 aa23.36■■□□□ 1.33
C9orf3-219ENST00000488186 CEP170BQ9Y4F5 1589 aaPredicted RBP23.36■■□□□ 1.33
C9orf3-219ENST00000488186 TET3O43151 1660 aa23.36■■□□□ 1.33
C9orf3-219ENST00000488186 IQGAP3Q86VI3 1631 aa23.36■■□□□ 1.33
C9orf3-219ENST00000488186 RAB3GAP2Q9H2M9 1393 aa23.35■■□□□ 1.33
C9orf3-219ENST00000488186 CFAP65Q6ZU64 1925 aaKnown RBP23.35■■□□□ 1.33
C9orf3-219ENST00000488186 HSPA2P54652 639 aa23.33■■□□□ 1.33
C9orf3-219ENST00000488186 SLC4A1APQ9BWU0 796 aaKnown RBP23.33■■□□□ 1.33
C9orf3-219ENST00000488186 PLA2R1Q13018 1463 aa23.31■■□□□ 1.32
C9orf3-219ENST00000488186 HRCP23327 699 aa23.3■■□□□ 1.32
C9orf3-219ENST00000488186 NOS1P29475 1434 aa23.3■■□□□ 1.32
C9orf3-219ENST00000488186 STRCQ7RTU9 1775 aa23.29■■□□□ 1.32
C9orf3-219ENST00000488186 DMRT2Q9Y5R5 561 aa23.29■■□□□ 1.32
C9orf3-219ENST00000488186 KDM5AP29375 1690 aaKnown RBP23.26■■□□□ 1.31
C9orf3-219ENST00000488186 PKD2Q13563 968 aa23.26■■□□□ 1.31
C9orf3-219ENST00000488186 THEMISQ8N1K5 641 aaPredicted RBP23.26■■□□□ 1.31
C9orf3-219ENST00000488186 MPHOSPH9Q99550 1183 aa23.26■■□□□ 1.31
C9orf3-219ENST00000488186 UGGT1Q9NYU2 1555 aa23.24■■□□□ 1.31
C9orf3-219ENST00000488186 SLC52A1Q9NWF4 448 aa23.24■■□□□ 1.31
C9orf3-219ENST00000488186 E9PCH4 1651 aa23.23■■□□□ 1.31
C9orf3-219ENST00000488186 PTPRTO14522 1441 aa23.23■■□□□ 1.31
C9orf3-219ENST00000488186 PCGF6Q9BYE7 350 aa23.22■■□□□ 1.31
C9orf3-219ENST00000488186 STAG3Q9UJ98 1225 aa23.22■■□□□ 1.31
C9orf3-219ENST00000488186 SYNMO15061 1565 aa23.21■■□□□ 1.31
C9orf3-219ENST00000488186 UBR1Q8IWV7 1749 aa23.19■■□□□ 1.3
C9orf3-219ENST00000488186 PIK3C2BO00750 1634 aa23.16■■□□□ 1.3
C9orf3-219ENST00000488186 IDI1Q13907 227 aa23.16■■□□□ 1.3
C9orf3-219ENST00000488186 FOXD1Q16676 465 aa23.16■■□□□ 1.3
C9orf3-219ENST00000488186 CHGAP10645 457 aaKnown RBP23.15■■□□□ 1.3
C9orf3-219ENST00000488186 SLIT1O75093 1534 aa23.14■■□□□ 1.3
C9orf3-219ENST00000488186 POLR1AO95602 1720 aaPredicted RBP23.14■■□□□ 1.3
C9orf3-219ENST00000488186 ANKLE2Q86XL3 938 aa23.14■■□□□ 1.29
C9orf3-219ENST00000488186 MED14O60244 1454 aa23.13■■□□□ 1.29
C9orf3-219ENST00000488186 ARHGAP23Q9P227 1491 aa23.13■■□□□ 1.29
C9orf3-219ENST00000488186 SPHKAPQ2M3C7 1700 aa23.11■■□□□ 1.29
C9orf3-219ENST00000488186 ADGRB3O60242 1522 aa23.09■■□□□ 1.29
C9orf3-219ENST00000488186 NCKAP5LQ9HCH0 1330 aa23.08■■□□□ 1.29
C9orf3-219ENST00000488186 NEURL4Q96JN8 1562 aa23.07■■□□□ 1.28
C9orf3-219ENST00000488186 TMEM2Q9UHN6 1383 aa23.07■■□□□ 1.28
C9orf3-219ENST00000488186 TMEM131LA2VDJ0 1609 aa23.06■■□□□ 1.28
C9orf3-219ENST00000488186 TRPM2O94759 1503 aa23.04■■□□□ 1.28
C9orf3-219ENST00000488186 SCAF11Q99590 1463 aaKnown RBP23.04■■□□□ 1.28
C9orf3-219ENST00000488186 ZNF326Q5BKZ1 582 aaKnown RBP23.03■■□□□ 1.28
C9orf3-219ENST00000488186 EID1Q9Y6B2 187 aa23.03■■□□□ 1.28
C9orf3-219ENST00000488186 HDGFP51858 240 aaKnown RBP23.02■■□□□ 1.28
C9orf3-219ENST00000488186 CCDC144AA2RUR9 1427 aa23.01■■□□□ 1.27
C9orf3-219ENST00000488186 NPHP4O75161 1426 aaPredicted RBP23.01■■□□□ 1.27
C9orf3-219ENST00000488186 TXNDC2Q86VQ3 553 aa23■■□□□ 1.27
C9orf3-219ENST00000488186 MYO5BQ9ULV0 1848 aa23■■□□□ 1.27
C9orf3-219ENST00000488186 IQGAP1P46940 1657 aa23■■□□□ 1.27
C9orf3-219ENST00000488186 LTKP29376 864 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms