RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 RNF17Q9BXT8 1623 aaKnown RBP18.01■□□□□ 0.47
HPS4-214ENST00000485842 CLTCQ00610 1675 aaKnown RBP18■□□□□ 0.47
HPS4-214ENST00000485842 ROCK1Q13464 1354 aa17.98■□□□□ 0.47
HPS4-214ENST00000485842 CNTLNQ9NXG0 1405 aa17.98■□□□□ 0.47
HPS4-214ENST00000485842 MROH1Q8NDA8 1641 aa17.97■□□□□ 0.47
HPS4-214ENST00000485842 MROH2AA6NES4 1674 aa17.96■□□□□ 0.47
HPS4-214ENST00000485842 KDM5DQ9BY66 1539 aa17.96■□□□□ 0.47
HPS4-214ENST00000485842 ANKRD50Q9ULJ7 1429 aa17.96■□□□□ 0.47
HPS4-214ENST00000485842 C3P01024 1663 aa17.96■□□□□ 0.47
HPS4-214ENST00000485842 CEBPAP49715 358 aaPredicted RBP17.94■□□□□ 0.46
HPS4-214ENST00000485842 DEPDC5O75140 1603 aa17.94■□□□□ 0.46
HPS4-214ENST00000485842 PRDM15P57071 1507 aaPredicted RBP17.93■□□□□ 0.46
HPS4-214ENST00000485842 FAM135AQ9P2D6 1515 aa17.93■□□□□ 0.46
HPS4-214ENST00000485842 CEP152O94986 1710 aa17.93■□□□□ 0.46
HPS4-214ENST00000485842 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.92■□□□□ 0.466e-6■□□□□ 8.2
HPS4-214ENST00000485842 PPP6R1Q9UPN7 881 aa17.92■□□□□ 0.46
HPS4-214ENST00000485842 ZC3H13Q5T200 1668 aaKnown RBP17.92■□□□□ 0.46
HPS4-214ENST00000485842 GCC2Q8IWJ2 1684 aa17.92■□□□□ 0.46
HPS4-214ENST00000485842 WASHC2CQ9Y4E1 1318 aa17.92■□□□□ 0.46
HPS4-214ENST00000485842 ABCC3O15438 1527 aa17.91■□□□□ 0.46
HPS4-214ENST00000485842 ZMYM3Q14202 1370 aa17.9■□□□□ 0.46
HPS4-214ENST00000485842 KANK1Q14678 1352 aa17.89■□□□□ 0.45
HPS4-214ENST00000485842 UNC13BO14795 1591 aa17.87■□□□□ 0.45
HPS4-214ENST00000485842 CAMSAP1Q5T5Y3 1602 aa17.87■□□□□ 0.45
HPS4-214ENST00000485842 NAIPQ13075 1403 aa17.87■□□□□ 0.45
HPS4-214ENST00000485842 HFM1A2PYH4 1435 aa17.86■□□□□ 0.45
HPS4-214ENST00000485842 PREX1Q8TCU6 1659 aa17.84■□□□□ 0.45
HPS4-214ENST00000485842 VWDEQ8N2E2 1590 aa17.84■□□□□ 0.45
HPS4-214ENST00000485842 PZPP20742 1482 aa17.83■□□□□ 0.45
HPS4-214ENST00000485842 NPATQ14207 1427 aa17.81■□□□□ 0.44
HPS4-214ENST00000485842 LMTK2Q8IWU2 1503 aa17.81■□□□□ 0.44
HPS4-214ENST00000485842 SETD1BQ9UPS6 1966 aaKnown RBP17.8■□□□□ 0.44
HPS4-214ENST00000485842 CFAP65Q6ZU64 1925 aaKnown RBP17.8■□□□□ 0.44
HPS4-214ENST00000485842 UHRF1BP1Q6BDS2 1440 aa17.8■□□□□ 0.44
HPS4-214ENST00000485842 IQGAP3Q86VI3 1631 aa17.8■□□□□ 0.44
HPS4-214ENST00000485842 EFCAB6Q5THR3 1501 aa17.79■□□□□ 0.44
HPS4-214ENST00000485842 FBXO31Q5XUX0 539 aaPredicted RBP17.79■□□□□ 0.44
HPS4-214ENST00000485842 LMTK3Q96Q04 1460 aa17.79■□□□□ 0.44
HPS4-214ENST00000485842 TET3O43151 1660 aa17.79■□□□□ 0.44
HPS4-214ENST00000485842 MYO3AQ8NEV4 1616 aa17.79■□□□□ 0.44
HPS4-214ENST00000485842 NUP155O75694 1391 aa17.78■□□□□ 0.44
HPS4-214ENST00000485842 TNRQ92752 1358 aa17.77■□□□□ 0.43
HPS4-214ENST00000485842 ERVK-7P63135 1459 aa17.76■□□□□ 0.43
HPS4-214ENST00000485842 ARHGAP31Q2M1Z3 1444 aa17.76■□□□□ 0.43
HPS4-214ENST00000485842 SPATA31D1Q6ZQQ2 1576 aa17.75■□□□□ 0.43
HPS4-214ENST00000485842 TRIM52Q96A61 297 aa17.74■□□□□ 0.43
HPS4-214ENST00000485842 ZNF142P52746 1687 aaPredicted RBP17.74■□□□□ 0.43
HPS4-214ENST00000485842 SETD5Q9C0A6 1442 aa17.73■□□□□ 0.43
HPS4-214ENST00000485842 HSPA2P54652 639 aa17.73■□□□□ 0.43
HPS4-214ENST00000485842 E9PCH4 1651 aa17.72■□□□□ 0.43
HPS4-214ENST00000485842 CEP170BQ9Y4F5 1589 aaPredicted RBP17.72■□□□□ 0.43
HPS4-214ENST00000485842 A2ML1A8K2U0 1454 aa17.69■□□□□ 0.42
HPS4-214ENST00000485842 RPRD2Q5VT52 1461 aaKnown RBP17.69■□□□□ 0.42
HPS4-214ENST00000485842 RAB3GAP2Q9H2M9 1393 aa17.68■□□□□ 0.42
HPS4-214ENST00000485842 SYNMO15061 1565 aa17.68■□□□□ 0.42
HPS4-214ENST00000485842 NLRP1Q9C000 1473 aa17.68■□□□□ 0.42
HPS4-214ENST00000485842 NOS1P29475 1434 aa17.65■□□□□ 0.42
HPS4-214ENST00000485842 UGGT1Q9NYU2 1555 aa17.63■□□□□ 0.41
HPS4-214ENST00000485842 PIK3C2BO00750 1634 aa17.63■□□□□ 0.41
HPS4-214ENST00000485842 SLC4A1APQ9BWU0 796 aaKnown RBP17.63■□□□□ 0.41
HPS4-214ENST00000485842 SPHKAPQ2M3C7 1700 aa17.63■□□□□ 0.41
HPS4-214ENST00000485842 UBR1Q8IWV7 1749 aa17.61■□□□□ 0.41
HPS4-214ENST00000485842 TRIM26Q12899 539 aaPredicted RBP17.61■□□□□ 0.41
HPS4-214ENST00000485842 PKD2Q13563 968 aa17.61■□□□□ 0.41
HPS4-214ENST00000485842 STRCQ7RTU9 1775 aa17.59■□□□□ 0.41
HPS4-214ENST00000485842 PLA2R1Q13018 1463 aa17.58■□□□□ 0.41
HPS4-214ENST00000485842 ACIN1Q9UKV3 1341 aaKnown RBP17.58■□□□□ 0.4
HPS4-214ENST00000485842 IDI1Q13907 227 aa17.58■□□□□ 0.4
HPS4-214ENST00000485842 STAG3Q9UJ98 1225 aa17.58■□□□□ 0.4
HPS4-214ENST00000485842 ADGRB3O60242 1522 aa17.57■□□□□ 0.4
HPS4-214ENST00000485842 SLC52A1Q9NWF4 448 aa17.57■□□□□ 0.4
HPS4-214ENST00000485842 FOXD1Q16676 465 aa17.56■□□□□ 0.4
HPS4-214ENST00000485842 THEMISQ8N1K5 641 aaPredicted RBP17.56■□□□□ 0.4
HPS4-214ENST00000485842 MPHOSPH9Q99550 1183 aa17.56■□□□□ 0.4
HPS4-214ENST00000485842 TRPM2O94759 1503 aa17.56■□□□□ 0.4
HPS4-214ENST00000485842 PTPRTO14522 1441 aa17.55■□□□□ 0.4
HPS4-214ENST00000485842 POLR1AO95602 1720 aaPredicted RBP17.55■□□□□ 0.4
HPS4-214ENST00000485842 MYO5BQ9ULV0 1848 aa17.55■□□□□ 0.4
HPS4-214ENST00000485842 KDM5AP29375 1690 aaKnown RBP17.55■□□□□ 0.4
HPS4-214ENST00000485842 NCKAP5LQ9HCH0 1330 aa17.54■□□□□ 0.4
HPS4-214ENST00000485842 CHGAP10645 457 aaKnown RBP17.54■□□□□ 0.4
HPS4-214ENST00000485842 CLTCL1P53675 1640 aa17.54■□□□□ 0.4
HPS4-214ENST00000485842 TMEM131LA2VDJ0 1609 aa17.52■□□□□ 0.4
HPS4-214ENST00000485842 HRCP23327 699 aa17.52■□□□□ 0.4
HPS4-214ENST00000485842 NEURL4Q96JN8 1562 aa17.5■□□□□ 0.39
HPS4-214ENST00000485842 SLIT1O75093 1534 aa17.5■□□□□ 0.39
HPS4-214ENST00000485842 ANKLE2Q86XL3 938 aa17.49■□□□□ 0.39
HPS4-214ENST00000485842 ARHGAP23Q9P227 1491 aa17.49■□□□□ 0.39
HPS4-214ENST00000485842 KIF1BO60333 1816 aa17.49■□□□□ 0.39
HPS4-214ENST00000485842 TMEM2Q9UHN6 1383 aa17.48■□□□□ 0.39
HPS4-214ENST00000485842 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
HPS4-214ENST00000485842 SCAF11Q99590 1463 aaKnown RBP17.47■□□□□ 0.39
HPS4-214ENST00000485842 CCDC144AA2RUR9 1427 aa17.46■□□□□ 0.39
HPS4-214ENST00000485842 TXNDC2Q86VQ3 553 aa17.45■□□□□ 0.38
HPS4-214ENST00000485842 EID1Q9Y6B2 187 aa17.45■□□□□ 0.38
HPS4-214ENST00000485842 NPHP4O75161 1426 aaPredicted RBP17.45■□□□□ 0.38
HPS4-214ENST00000485842 RIMS2Q9UQ26 1411 aa17.45■□□□□ 0.38
HPS4-214ENST00000485842 IQGAP1P46940 1657 aa17.45■□□□□ 0.38
HPS4-214ENST00000485842 LTKP29376 864 aa17.44■□□□□ 0.38
HPS4-214ENST00000485842 ZNF326Q5BKZ1 582 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms