RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 NPATQ14207 1427 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 CROCC2H7BZ55 1655 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 LMTK3Q96Q04 1460 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 ATP7AQ04656 1500 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 BBXQ8WY36 941 aaPredicted RBP8.19□□□□□ -1.1
CCDC39-205ENST00000485055 ARID3AQ99856 593 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 YEATS2Q9ULM3 1422 aa8.19□□□□□ -1.1
CCDC39-205ENST00000485055 KDM5DQ9BY66 1539 aa8.18□□□□□ -1.1
CCDC39-205ENST00000485055 VPS8Q8N3P4 1428 aa8.18□□□□□ -1.1
CCDC39-205ENST00000485055 CHMP4AQ9BY43 222 aa8.17□□□□□ -1.1
CCDC39-205ENST00000485055 MIA2Q96PC5 1412 aa8.17□□□□□ -1.1
CCDC39-205ENST00000485055 RSPH4AQ5TD94 716 aa8.16□□□□□ -1.1
CCDC39-205ENST00000485055 KDM5AP29375 1690 aaKnown RBP8.16□□□□□ -1.1
CCDC39-205ENST00000485055 SHANK2Q9UPX8 1470 aa8.16□□□□□ -1.1
CCDC39-205ENST00000485055 TRAPPC8Q9Y2L5 1435 aa8.15□□□□□ -1.1
CCDC39-205ENST00000485055 IQSEC2Q5JU85 1478 aa8.15□□□□□ -1.1
CCDC39-205ENST00000485055 SYCP2Q9BX26 1530 aa8.15□□□□□ -1.1
CCDC39-205ENST00000485055 TCOF1Q13428 1488 aaKnown RBP8.15□□□□□ -1.1
CCDC39-205ENST00000485055 LRRC9Q6ZRR7 1453 aa8.15□□□□□ -1.1
CCDC39-205ENST00000485055 STRCQ7RTU9 1775 aa8.15□□□□□ -1.11
CCDC39-205ENST00000485055 DEPDC5O75140 1603 aa8.14□□□□□ -1.11
CCDC39-205ENST00000485055 RAPGEF3O95398 923 aa8.14□□□□□ -1.11
CCDC39-205ENST00000485055 NCOA2Q15596 1464 aa8.13□□□□□ -1.11
CCDC39-205ENST00000485055 CCDC141Q6ZP82 1450 aa8.12□□□□□ -1.11
CCDC39-205ENST00000485055 PTPRTO14522 1441 aa8.12□□□□□ -1.11
CCDC39-205ENST00000485055 A2MP01023 1474 aa8.12□□□□□ -1.11
CCDC39-205ENST00000485055 PLA2R1Q13018 1463 aa8.11□□□□□ -1.11
CCDC39-205ENST00000485055 CAMSAP2Q08AD1 1489 aa8.11□□□□□ -1.11
CCDC39-205ENST00000485055 SAMD1Q6SPF0 538 aaPredicted RBP8.11□□□□□ -1.11
CCDC39-205ENST00000485055 CCDC9Q9Y3X0 531 aaKnown RBP8.11□□□□□ -1.11
CCDC39-205ENST00000485055 CCNB3Q8WWL7 1395 aa8.11□□□□□ -1.11
CCDC39-205ENST00000485055 DNMT1P26358 1616 aaKnown RBP8.1□□□□□ -1.11
CCDC39-205ENST00000485055 VWDEQ8N2E2 1590 aa8.1□□□□□ -1.11
CCDC39-205ENST00000485055 MROH1Q8NDA8 1641 aa8.1□□□□□ -1.11
CCDC39-205ENST00000485055 MYO3AQ8NEV4 1616 aa8.1□□□□□ -1.11
CCDC39-205ENST00000485055 CLTCQ00610 1675 aaKnown RBP8.1□□□□□ -1.11
CCDC39-205ENST00000485055 IFNLR1Q8IU57 520 aaPredicted RBP8.09□□□□□ -1.11
CCDC39-205ENST00000485055 NECTIN2Q92692 538 aa8.09□□□□□ -1.11
CCDC39-205ENST00000485055 LMTK2Q8IWU2 1503 aa8.09□□□□□ -1.11
CCDC39-205ENST00000485055 CDK11BP21127 795 aaKnown RBP8.09□□□□□ -1.11
CCDC39-205ENST00000485055 DHX29Q7Z478 1369 aaKnown RBP8.09□□□□□ -1.11
CCDC39-205ENST00000485055 BRPF1P55201 1214 aaPredicted RBP8.08□□□□□ -1.12
CCDC39-205ENST00000485055 ADGRL2O95490 1459 aa8.08□□□□□ -1.12
CCDC39-205ENST00000485055 PDIA4P13667 645 aaKnown RBP8.08□□□□□ -1.12
CCDC39-205ENST00000485055 SPRYD3Q8NCJ5 442 aa8.08□□□□□ -1.12
CCDC39-205ENST00000485055 PRDM15P57071 1507 aaPredicted RBP8.08□□□□□ -1.12
CCDC39-205ENST00000485055 MTUS2Q5JR59 1369 aa8.08□□□□□ -1.12
CCDC39-205ENST00000485055 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.08□□□□□ -1.12
CCDC39-205ENST00000485055 HNRNPUL2Q1KMD3 747 aaKnown RBP8.08□□□□□ -1.12
CCDC39-205ENST00000485055 MYOM3Q5VTT5 1437 aa8.07□□□□□ -1.12
CCDC39-205ENST00000485055 DUOX2Q9NRD8 1548 aa8.07□□□□□ -1.12
CCDC39-205ENST00000485055 PTPRKQ15262 1439 aa8.07□□□□□ -1.12
CCDC39-205ENST00000485055 SPATA31D1Q6ZQQ2 1576 aa8.07□□□□□ -1.12
CCDC39-205ENST00000485055 POLR1AO95602 1720 aaPredicted RBP8.07□□□□□ -1.12
CCDC39-205ENST00000485055 ARHGAP31Q2M1Z3 1444 aa8.07□□□□□ -1.12
CCDC39-205ENST00000485055 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.06□□□□□ -1.12
CCDC39-205ENST00000485055 PZPP20742 1482 aa8.06□□□□□ -1.12
CCDC39-205ENST00000485055 PTPN23Q9H3S7 1636 aa8.06□□□□□ -1.12
CCDC39-205ENST00000485055 ERBINQ96RT1 1412 aa8.05□□□□□ -1.12
CCDC39-205ENST00000485055 DHX37Q8IY37 1157 aaKnown RBP8.05□□□□□ -1.12
CCDC39-205ENST00000485055 CEP170BQ9Y4F5 1589 aaPredicted RBP8.05□□□□□ -1.12
CCDC39-205ENST00000485055 C1orf115Q9H7X2 142 aa8.04□□□□□ -1.12
CCDC39-205ENST00000485055 NCOA1Q15788 1441 aa8.04□□□□□ -1.12
CCDC39-205ENST00000485055 CAMSAP1Q5T5Y3 1602 aa8.04□□□□□ -1.12
CCDC39-205ENST00000485055 AFAP1Q8N556 730 aa8.04□□□□□ -1.12
CCDC39-205ENST00000485055 SPAG9O60271 1321 aaKnown RBP8.04□□□□□ -1.12
CCDC39-205ENST00000485055 UHRF1BP1Q6BDS2 1440 aa8.04□□□□□ -1.12
CCDC39-205ENST00000485055 A2ML1A8K2U0 1454 aa8.03□□□□□ -1.12
CCDC39-205ENST00000485055 MED14O60244 1454 aa8.03□□□□□ -1.12
CCDC39-205ENST00000485055 NLRP1Q9C000 1473 aa8.03□□□□□ -1.12
CCDC39-205ENST00000485055 LTBP4Q8N2S1 1624 aa8.03□□□□□ -1.12
CCDC39-205ENST00000485055 CNKSR2Q8WXI2 1034 aa8.03□□□□□ -1.12
CCDC39-205ENST00000485055 CFDP1Q9UEE9 299 aaPredicted RBP8.03□□□□□ -1.12
CCDC39-205ENST00000485055 ABCC3O15438 1527 aa8.02□□□□□ -1.12
CCDC39-205ENST00000485055 UNC13BO14795 1591 aa8.02□□□□□ -1.13
CCDC39-205ENST00000485055 ARID3CA6NKF2 412 aa8.02□□□□□ -1.13
CCDC39-205ENST00000485055 GCC2Q8IWJ2 1684 aa8.01□□□□□ -1.13
CCDC39-205ENST00000485055 ZMYM3Q14202 1370 aa8□□□□□ -1.13
CCDC39-205ENST00000485055 DMRT2Q9Y5R5 561 aa8□□□□□ -1.13
CCDC39-205ENST00000485055 NEURL4Q96JN8 1562 aa8□□□□□ -1.13
CCDC39-205ENST00000485055 UBR1Q8IWV7 1749 aa8□□□□□ -1.13
CCDC39-205ENST00000485055 VASPP50552 380 aaPredicted RBP8□□□□□ -1.13
CCDC39-205ENST00000485055 SLIT1O75093 1534 aa7.99□□□□□ -1.13
CCDC39-205ENST00000485055 FGD6Q6ZV73 1430 aa7.99□□□□□ -1.13
CCDC39-205ENST00000485055 ZBTB7CA1YPR0 619 aa7.99□□□□□ -1.13
CCDC39-205ENST00000485055 RPRD2Q5VT52 1461 aaKnown RBP7.99□□□□□ -1.13
CCDC39-205ENST00000485055 ABCC5O15440 1437 aa7.99□□□□□ -1.13
CCDC39-205ENST00000485055 ARHGAP23Q9P227 1491 aa7.99□□□□□ -1.13
CCDC39-205ENST00000485055 CEP152O94986 1710 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 PIK3C2BO00750 1634 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 SYNMO15061 1565 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 TET3O43151 1660 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 DAPK1P53355 1430 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 ROCK1Q13464 1354 aa7.98□□□□□ -1.13
CCDC39-205ENST00000485055 IQGAP3Q86VI3 1631 aa7.97□□□□□ -1.13
CCDC39-205ENST00000485055 HNRNPMP52272 730 aaKnown RBP eCLIP7.96□□□□□ -1.13
CCDC39-205ENST00000485055 ZNF428Q96B54 188 aa7.96□□□□□ -1.13
CCDC39-205ENST00000485055 CPS1P31327 1500 aa7.96□□□□□ -1.13
CCDC39-205ENST00000485055 ARID4BQ4LE39 1312 aaPredicted RBP7.96□□□□□ -1.14
CCDC39-205ENST00000485055 ERVK-7P63135 1459 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms