RNA–Protein interactions for RNA: ENST00000481231.5

SMARCE1-210, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 695 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-210ENST00000481231 RNF17Q9BXT8 1623 aaKnown RBP15.52■□□□□ 0.08
SMARCE1-210ENST00000481231 LRRC7Q96NW7 1537 aa15.52■□□□□ 0.07
SMARCE1-210ENST00000481231 NPHP4O75161 1426 aaPredicted RBP15.51■□□□□ 0.07
SMARCE1-210ENST00000481231 ANKLE2Q86XL3 938 aa15.51■□□□□ 0.07
SMARCE1-210ENST00000481231 STRCP1A6NGW2 1772 aa15.49■□□□□ 0.07
SMARCE1-210ENST00000481231 GPATCH8Q9UKJ3 1502 aaKnown RBP15.48■□□□□ 0.07
SMARCE1-210ENST00000481231 MED14O60244 1454 aa15.48■□□□□ 0.07
SMARCE1-210ENST00000481231 CCDC18Q5T9S5 1454 aa15.48■□□□□ 0.07
SMARCE1-210ENST00000481231 SETD1AO15047 1707 aaKnown RBP15.47■□□□□ 0.07
SMARCE1-210ENST00000481231 PZPP20742 1482 aa15.46■□□□□ 0.07
SMARCE1-210ENST00000481231 SYNMO15061 1565 aa15.46■□□□□ 0.07
SMARCE1-210ENST00000481231 IQGAP1P46940 1657 aa15.46■□□□□ 0.07
SMARCE1-210ENST00000481231 DEPDC5O75140 1603 aa15.46■□□□□ 0.06
SMARCE1-210ENST00000481231 UGGT1Q9NYU2 1555 aa15.45■□□□□ 0.06
SMARCE1-210ENST00000481231 KIAA1107Q9UPP5 1409 aa15.45■□□□□ 0.06
SMARCE1-210ENST00000481231 ADGBQ8N7X0 1667 aa15.44■□□□□ 0.06
SMARCE1-210ENST00000481231 CASKIN1Q8WXD9 1431 aa15.44■□□□□ 0.06
SMARCE1-210ENST00000481231 THEMISQ8N1K5 641 aaPredicted RBP15.44■□□□□ 0.06
SMARCE1-210ENST00000481231 FAM135AQ9P2D6 1515 aa15.43■□□□□ 0.06
SMARCE1-210ENST00000481231 PLEKHH2Q8IVE3 1493 aa15.43■□□□□ 0.06
SMARCE1-210ENST00000481231 KDM5DQ9BY66 1539 aa15.43■□□□□ 0.06
SMARCE1-210ENST00000481231 CFDP1Q9UEE9 299 aaPredicted RBP15.42■□□□□ 0.06
SMARCE1-210ENST00000481231 MIA2Q96PC5 1412 aa15.42■□□□□ 0.06
SMARCE1-210ENST00000481231 NLRP1Q9C000 1473 aa15.41■□□□□ 0.06
SMARCE1-210ENST00000481231 KIF3BO15066 747 aa15.39■□□□□ 0.05
SMARCE1-210ENST00000481231 ZNF644Q9H582 1327 aaPredicted RBP15.39■□□□□ 0.05
SMARCE1-210ENST00000481231 DHX29Q7Z478 1369 aaKnown RBP15.38■□□□□ 0.05
SMARCE1-210ENST00000481231 CCNB3Q8WWL7 1395 aa15.37■□□□□ 0.05
SMARCE1-210ENST00000481231 WASHC2CQ9Y4E1 1318 aa15.37■□□□□ 0.05
SMARCE1-210ENST00000481231 ZC3H13Q5T200 1668 aaKnown RBP15.35■□□□□ 0.05
SMARCE1-210ENST00000481231 FYCO1Q9BQS8 1478 aa15.35■□□□□ 0.05
SMARCE1-210ENST00000481231 MBD5Q9P267 1494 aa15.35■□□□□ 0.05
SMARCE1-210ENST00000481231 FAM135BQ49AJ0 1406 aa15.34■□□□□ 0.05
SMARCE1-210ENST00000481231 XIRP1Q702N8 1843 aaKnown RBP15.33■□□□□ 0.04
SMARCE1-210ENST00000481231 RTEL1-TNFRSF6BF6WH68 1400 aa15.33■□□□□ 0.04
SMARCE1-210ENST00000481231 UPF1Q92900 1129 aaKnown RBP eCLIP15.31■□□□□ 0.04
SMARCE1-210ENST00000481231 SCAF11Q99590 1463 aaKnown RBP15.31■□□□□ 0.04
SMARCE1-210ENST00000481231 ROBO1Q9Y6N7 1651 aa15.3■□□□□ 0.04
SMARCE1-210ENST00000481231 TIAM1Q13009 1591 aa15.29■□□□□ 0.04
SMARCE1-210ENST00000481231 SRCAPQ6ZRS2 3230 aa15.28■□□□□ 0.04
SMARCE1-210ENST00000481231 ERVK-7P63135 1459 aa15.27■□□□□ 0.04
SMARCE1-210ENST00000481231 LTKP29376 864 aa15.27■□□□□ 0.04
SMARCE1-210ENST00000481231 NCOA2Q15596 1464 aa15.27■□□□□ 0.03
SMARCE1-210ENST00000481231 TMEM94Q12767 1356 aa15.26■□□□□ 0.03
SMARCE1-210ENST00000481231 TRIM52Q96A61 297 aa15.26■□□□□ 0.03
SMARCE1-210ENST00000481231 RBM33Q96EV2 1170 aaKnown RBP15.26■□□□□ 0.03
SMARCE1-210ENST00000481231 MTUS2Q5JR59 1369 aa15.25■□□□□ 0.03
SMARCE1-210ENST00000481231 ABCC3O15438 1527 aa15.25■□□□□ 0.03
SMARCE1-210ENST00000481231 UBR1Q8IWV7 1749 aa15.25■□□□□ 0.03
SMARCE1-210ENST00000481231 CCDC141Q6ZP82 1450 aa15.25■□□□□ 0.03
SMARCE1-210ENST00000481231 MAP3K1Q13233 1512 aa15.24■□□□□ 0.03
SMARCE1-210ENST00000481231 TXNDC2Q86VQ3 553 aa15.24■□□□□ 0.03
SMARCE1-210ENST00000481231 ARHGAP23Q9P227 1491 aa15.23■□□□□ 0.03
SMARCE1-210ENST00000481231 SLIT1O75093 1534 aa15.22■□□□□ 0.03
SMARCE1-210ENST00000481231 LRP6O75581 1613 aa15.21■□□□□ 0.03
SMARCE1-210ENST00000481231 JCADQ9P266 1359 aa15.21■□□□□ 0.02
SMARCE1-210ENST00000481231 PHLPP1O60346 1717 aa15.2■□□□□ 0.02
SMARCE1-210ENST00000481231 CAMSAP2Q08AD1 1489 aa15.2■□□□□ 0.02
SMARCE1-210ENST00000481231 LRRC9Q6ZRR7 1453 aa15.2■□□□□ 0.02
SMARCE1-210ENST00000481231 EHBP1L1Q8N3D4 1523 aa15.17■□□□□ 0.02
SMARCE1-210ENST00000481231 MEX3CQ5U5Q3 659 aaKnown RBP15.16■□□□□ 0.02
SMARCE1-210ENST00000481231 PROSER2Q86WR7 435 aaPredicted RBP15.16■□□□□ 0.02
SMARCE1-210ENST00000481231 EID1Q9Y6B2 187 aa15.16■□□□□ 0.02
SMARCE1-210ENST00000481231 MROH1Q8NDA8 1641 aa15.16■□□□□ 0.02
SMARCE1-210ENST00000481231 COL16A1Q07092 1604 aaPredicted RBP15.15■□□□□ 0.02
SMARCE1-210ENST00000481231 KCNA6P17658 529 aa15.15■□□□□ 0.02
SMARCE1-210ENST00000481231 ZNF772Q68DY9 489 aaPredicted RBP15.15■□□□□ 0.02
SMARCE1-210ENST00000481231 PRDM15P57071 1507 aaPredicted RBP15.15■□□□□ 0.02
SMARCE1-210ENST00000481231 CEP162Q5TB80 1403 aa15.15■□□□□ 0.02
SMARCE1-210ENST00000481231 CEP152O94986 1710 aa15.14■□□□□ 0.01
SMARCE1-210ENST00000481231 SLC26A8Q96RN1 970 aa15.14■□□□□ 0.01
SMARCE1-210ENST00000481231 TMEM2Q9UHN6 1383 aa15.13■□□□□ 0.01
SMARCE1-210ENST00000481231 SLAIN2Q9P270 581 aa15.13■□□□□ 0.01
SMARCE1-210ENST00000481231 MSH6P52701 1360 aa15.12■□□□□ 0.01
SMARCE1-210ENST00000481231 PIK3C2BO00750 1634 aa15.12■□□□□ 0.01
SMARCE1-210ENST00000481231 RXRBP28702 533 aa15.11■□□□□ 0.01
SMARCE1-210ENST00000481231 NKTRP30414 1462 aaKnown RBP15.11■□□□□ 0.01
SMARCE1-210ENST00000481231 SPATA31A6Q5VVP1 1343 aa15.11■□□□□ 0.01
SMARCE1-210ENST00000481231 ARHGEF5Q12774 1597 aa15.11■□□□□ 0.01
SMARCE1-210ENST00000481231 NWD1Q149M9 1564 aa15.1■□□□□ 0.01
SMARCE1-210ENST00000481231 CFAP65Q6ZU64 1925 aaKnown RBP15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 TSPY4P0CV99 314 aa15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 TSPY10P0CW01 314 aa15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 RSPH4AQ5TD94 716 aa15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 EIF2AK4Q9P2K8 1649 aaKnown RBP15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 TET3O43151 1660 aa15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 FGD6Q6ZV73 1430 aa15.09■□□□□ 0.01
SMARCE1-210ENST00000481231 STAG3Q9UJ98 1225 aa15.08■□□□□ 0
SMARCE1-210ENST00000481231 CDK12Q9NYV4 1490 aaPredicted RBP15.08■□□□□ 0
SMARCE1-210ENST00000481231 EFCAB6Q5THR3 1501 aa15.07■□□□□ 0
SMARCE1-210ENST00000481231 RGS12O14924 1447 aa15.06■□□□□ 0
SMARCE1-210ENST00000481231 ARHGAP31Q2M1Z3 1444 aa15.05■□□□□ -0
SMARCE1-210ENST00000481231 KDM5AP29375 1690 aaKnown RBP15.04■□□□□ -0
SMARCE1-210ENST00000481231 SHPRHQ149N8 1683 aa15.04■□□□□ -0
SMARCE1-210ENST00000481231 MAST1Q9Y2H9 1570 aa15.04■□□□□ -0
SMARCE1-210ENST00000481231 NUTM2BA6NNL0 878 aaPredicted RBP15.04■□□□□ -0
SMARCE1-210ENST00000481231 NUTM2EB1AL46 878 aaPredicted RBP15.04■□□□□ -0
SMARCE1-210ENST00000481231 NUTM2AQ8IVF1 878 aaPredicted RBP15.04■□□□□ -0
SMARCE1-210ENST00000481231 AFF2P51816 1311 aa15.03■□□□□ -0
SMARCE1-210ENST00000481231 AHDC1Q5TGY3 1603 aaPredicted RBP15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 81 ms