RNA–Protein interactions for RNA: ENST00000480210.1

USP54-212, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 640 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-212ENST00000480210 RNF17Q9BXT8 1623 aaKnown RBP12.37□□□□□ -0.43
USP54-212ENST00000480210 SIGLEC1Q9BZZ2 1709 aa12.37□□□□□ -0.43
USP54-212ENST00000480210 SETD1BQ9UPS6 1966 aaKnown RBP12.37□□□□□ -0.43
USP54-212ENST00000480210 FER1L4A9Z1Z3 1794 aa12.36□□□□□ -0.43
USP54-212ENST00000480210 HRCP23327 699 aa12.36□□□□□ -0.43
USP54-212ENST00000480210 GGT6Q6P531 493 aa12.36□□□□□ -0.43
USP54-212ENST00000480210 KANK1Q14678 1352 aa12.35□□□□□ -0.43
USP54-212ENST00000480210 DEPDC5O75140 1603 aa12.35□□□□□ -0.43
USP54-212ENST00000480210 NAIPQ13075 1403 aa12.35□□□□□ -0.43
USP54-212ENST00000480210 ZC3H13Q5T200 1668 aaKnown RBP12.35□□□□□ -0.43
USP54-212ENST00000480210 MLECQ14165 292 aa12.34□□□□□ -0.43
USP54-212ENST00000480210 MROH2AA6NES4 1674 aa12.34□□□□□ -0.43
USP54-212ENST00000480210 KDM5DQ9BY66 1539 aa12.33□□□□□ -0.44
USP54-212ENST00000480210 PELP1Q8IZL8 1130 aaKnown RBP12.33□□□□□ -0.44
USP54-212ENST00000480210 WASHC2CQ9Y4E1 1318 aa12.33□□□□□ -0.44
USP54-212ENST00000480210 SETD5Q9C0A6 1442 aa12.32□□□□□ -0.44
USP54-212ENST00000480210 PRDM15P57071 1507 aaPredicted RBP12.32□□□□□ -0.44
USP54-212ENST00000480210 KDM4FA0A1W2PPD8 638 aa12.31□□□□□ -0.44
USP54-212ENST00000480210 UNC13BO14795 1591 aa12.3□□□□□ -0.44
USP54-212ENST00000480210 MADDQ8WXG6 1647 aa12.3□□□□□ -0.44
USP54-212ENST00000480210 RIMS1Q86UR5 1692 aaKnown RBP12.3□□□□□ -0.44
USP54-212ENST00000480210 CLTCQ00610 1675 aaKnown RBP12.29□□□□□ -0.44
USP54-212ENST00000480210 LMTK2Q8IWU2 1503 aa12.29□□□□□ -0.44
USP54-212ENST00000480210 VWDEQ8N2E2 1590 aa12.29□□□□□ -0.44
USP54-212ENST00000480210 MROH1Q8NDA8 1641 aa12.29□□□□□ -0.44
USP54-212ENST00000480210 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP54-212ENST00000480210 ZMYM3Q14202 1370 aa12.28□□□□□ -0.44
USP54-212ENST00000480210 IQGAP3Q86VI3 1631 aa12.27□□□□□ -0.44
USP54-212ENST00000480210 CEP152O94986 1710 aa12.27□□□□□ -0.45
USP54-212ENST00000480210 NUP155O75694 1391 aa12.27□□□□□ -0.45
USP54-212ENST00000480210 ARHGAP31Q2M1Z3 1444 aa12.27□□□□□ -0.45
USP54-212ENST00000480210 CFAP65Q6ZU64 1925 aaKnown RBP12.27□□□□□ -0.45
USP54-212ENST00000480210 PTPRMP28827 1452 aa12.27□□□□□ -0.45
USP54-212ENST00000480210 ABCC3O15438 1527 aa12.27□□□□□ -0.45
USP54-212ENST00000480210 TET3O43151 1660 aa12.26□□□□□ -0.45
USP54-212ENST00000480210 C3P01024 1663 aa12.26□□□□□ -0.45
USP54-212ENST00000480210 TRIM52Q96A61 297 aa12.25□□□□□ -0.45
USP54-212ENST00000480210 CAMSAP1Q5T5Y3 1602 aa12.25□□□□□ -0.45
USP54-212ENST00000480210 NPATQ14207 1427 aa12.24□□□□□ -0.45
USP54-212ENST00000480210 RPRD2Q5VT52 1461 aaKnown RBP12.24□□□□□ -0.45
USP54-212ENST00000480210 PZPP20742 1482 aa12.23□□□□□ -0.45
USP54-212ENST00000480210 RAB3GAP2Q9H2M9 1393 aa12.23□□□□□ -0.45
USP54-212ENST00000480210 EFCAB6Q5THR3 1501 aa12.21□□□□□ -0.46
USP54-212ENST00000480210 SLC4A1APQ9BWU0 796 aaKnown RBP12.2□□□□□ -0.46
USP54-212ENST00000480210 MPHOSPH9Q99550 1183 aa12.19□□□□□ -0.46
USP54-212ENST00000480210 PREX1Q8TCU6 1659 aa12.19□□□□□ -0.46
USP54-212ENST00000480210 SPATA31D1Q6ZQQ2 1576 aa12.18□□□□□ -0.46
USP54-212ENST00000480210 CEBPAP49715 358 aaPredicted RBP12.18□□□□□ -0.46
USP54-212ENST00000480210 SLC52A1Q9NWF4 448 aa12.18□□□□□ -0.46
USP54-212ENST00000480210 E9PCH4 1651 aa12.18□□□□□ -0.46
USP54-212ENST00000480210 MYT1Q01538 1121 aa12.17□□□□□ -0.46
USP54-212ENST00000480210 ERVK-7P63135 1459 aa12.16□□□□□ -0.46
USP54-212ENST00000480210 NOS1P29475 1434 aa12.16□□□□□ -0.46
USP54-212ENST00000480210 TNRQ92752 1358 aa12.16□□□□□ -0.46
USP54-212ENST00000480210 NLRP1Q9C000 1473 aa12.15□□□□□ -0.46
USP54-212ENST00000480210 SPHKAPQ2M3C7 1700 aa12.15□□□□□ -0.46
USP54-212ENST00000480210 PKD2Q13563 968 aa12.15□□□□□ -0.46
USP54-212ENST00000480210 PCGF6Q9BYE7 350 aa12.15□□□□□ -0.46
USP54-212ENST00000480210 UHRF1BP1Q6BDS2 1440 aa12.14□□□□□ -0.47
USP54-212ENST00000480210 KDM5AP29375 1690 aaKnown RBP12.14□□□□□ -0.47
USP54-212ENST00000480210 FBXO31Q5XUX0 539 aaPredicted RBP12.14□□□□□ -0.47
USP54-212ENST00000480210 PLPPR3Q6T4P5 718 aa12.14□□□□□ -0.47
USP54-212ENST00000480210 PTPRTO14522 1441 aa12.13□□□□□ -0.47
USP54-212ENST00000480210 ZNF142P52746 1687 aaPredicted RBP12.12□□□□□ -0.47
USP54-212ENST00000480210 KIF1BO60333 1816 aa12.11□□□□□ -0.47
USP54-212ENST00000480210 A2ML1A8K2U0 1454 aa12.11□□□□□ -0.47
USP54-212ENST00000480210 THEMISQ8N1K5 641 aaPredicted RBP12.11□□□□□ -0.47
USP54-212ENST00000480210 MYO3AQ8NEV4 1616 aa12.11□□□□□ -0.47
USP54-212ENST00000480210 TRPM2O94759 1503 aa12.1□□□□□ -0.47
USP54-212ENST00000480210 PIK3C2BO00750 1634 aa12.09□□□□□ -0.47
USP54-212ENST00000480210 HDGFP51858 240 aaKnown RBP12.09□□□□□ -0.47
USP54-212ENST00000480210 IDI1Q13907 227 aa12.09□□□□□ -0.47
USP54-212ENST00000480210 STAG3Q9UJ98 1225 aa12.09□□□□□ -0.47
USP54-212ENST00000480210 SYNMO15061 1565 aa12.09□□□□□ -0.47
USP54-212ENST00000480210 CEP170BQ9Y4F5 1589 aaPredicted RBP12.09□□□□□ -0.47
USP54-212ENST00000480210 UGGT1Q9NYU2 1555 aa12.08□□□□□ -0.48
USP54-212ENST00000480210 UBR1Q8IWV7 1749 aa12.07□□□□□ -0.48
USP54-212ENST00000480210 CCDC144AA2RUR9 1427 aa12.06□□□□□ -0.48
USP54-212ENST00000480210 LMTK3Q96Q04 1460 aa12.06□□□□□ -0.48
USP54-212ENST00000480210 ANKRD30BQ9BXX2 1392 aa12.05□□□□□ -0.48
USP54-212ENST00000480210 NEURL4Q96JN8 1562 aa12.05□□□□□ -0.48
USP54-212ENST00000480210 PLA2R1Q13018 1463 aa12.05□□□□□ -0.48
USP54-212ENST00000480210 STAC3Q96MF2 364 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 ADGRB3O60242 1522 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 RPGRIP1LQ68CZ1 1315 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 CLSPNQ9HAW4 1339 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 MYO5BQ9ULV0 1848 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 TMEM131LA2VDJ0 1609 aa12.04□□□□□ -0.48
USP54-212ENST00000480210 DHX57Q6P158 1386 aaKnown RBP12.04□□□□□ -0.48
USP54-212ENST00000480210 FOXD1Q16676 465 aa12.03□□□□□ -0.48
USP54-212ENST00000480210 ANKLE2Q86XL3 938 aa12.03□□□□□ -0.48
USP54-212ENST00000480210 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.03□□□□□ -0.48
USP54-212ENST00000480210 DMRT2Q9Y5R5 561 aa12.03□□□□□ -0.48
USP54-212ENST00000480210 CLTCL1P53675 1640 aa12.03□□□□□ -0.48
USP54-212ENST00000480210 CHGAP10645 457 aaKnown RBP12.02□□□□□ -0.49
USP54-212ENST00000480210 EID1Q9Y6B2 187 aa12.02□□□□□ -0.49
USP54-212ENST00000480210 SLIT1O75093 1534 aa12.01□□□□□ -0.49
USP54-212ENST00000480210 ARHGAP23Q9P227 1491 aa12.01□□□□□ -0.49
USP54-212ENST00000480210 TMEM2Q9UHN6 1383 aa12□□□□□ -0.49
USP54-212ENST00000480210 POLR1AO95602 1720 aaPredicted RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms