RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 ANKRD50Q9ULJ7 1429 aa29.92■■■□□ 2.38
LIME1-205ENST00000480139 CNTLNQ9NXG0 1405 aa29.91■■■□□ 2.38
LIME1-205ENST00000480139 MROH1Q8NDA8 1641 aa29.91■■■□□ 2.38
LIME1-205ENST00000480139 PTPRMP28827 1452 aa29.9■■■□□ 2.38
LIME1-205ENST00000480139 MROH2AA6NES4 1674 aa29.9■■■□□ 2.38
LIME1-205ENST00000480139 GCC2Q8IWJ2 1684 aa29.9■■■□□ 2.38
LIME1-205ENST00000480139 PRDM15P57071 1507 aaPredicted RBP29.89■■■□□ 2.38
LIME1-205ENST00000480139 GGT6Q6P531 493 aa29.88■■■□□ 2.37
LIME1-205ENST00000480139 ZC3H13Q5T200 1668 aaKnown RBP29.87■■■□□ 2.37
LIME1-205ENST00000480139 KDM5DQ9BY66 1539 aa29.86■■■□□ 2.37
LIME1-205ENST00000480139 CLTCQ00610 1675 aaKnown RBP29.86■■■□□ 2.37
LIME1-205ENST00000480139 HFM1A2PYH4 1435 aa29.85■■■□□ 2.37
LIME1-205ENST00000480139 NAIPQ13075 1403 aa29.83■■■□□ 2.37
LIME1-205ENST00000480139 ESF1Q9H501 851 aaKnown RBP29.83■■■□□ 2.37
LIME1-205ENST00000480139 UNC13BO14795 1591 aa29.81■■■□□ 2.36
LIME1-205ENST00000480139 C3P01024 1663 aa29.8■■■□□ 2.36
LIME1-205ENST00000480139 VWDEQ8N2E2 1590 aa29.79■■■□□ 2.36
LIME1-205ENST00000480139 ABCC3O15438 1527 aa29.79■■■□□ 2.36
LIME1-205ENST00000480139 WASHC2CQ9Y4E1 1318 aa29.75■■■□□ 2.35
LIME1-205ENST00000480139 CEP152O94986 1710 aa29.75■■■□□ 2.35
LIME1-205ENST00000480139 KANK1Q14678 1352 aa29.74■■■□□ 2.35
LIME1-205ENST00000480139 LMTK2Q8IWU2 1503 aa29.73■■■□□ 2.35
LIME1-205ENST00000480139 ZMYM3Q14202 1370 aa29.73■■■□□ 2.35
LIME1-205ENST00000480139 CAMSAP1Q5T5Y3 1602 aa29.72■■■□□ 2.35
LIME1-205ENST00000480139 AEBP2Q6ZN18 517 aaPredicted RBP29.72■■■□□ 2.35
LIME1-205ENST00000480139 IQGAP3Q86VI3 1631 aa29.68■■■□□ 2.34
LIME1-205ENST00000480139 PZPP20742 1482 aa29.68■■■□□ 2.34
LIME1-205ENST00000480139 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.67■■■□□ 2.34
LIME1-205ENST00000480139 NPATQ14207 1427 aa29.66■■■□□ 2.34
LIME1-205ENST00000480139 ARHGAP31Q2M1Z3 1444 aa29.64■■■□□ 2.34
LIME1-205ENST00000480139 CEBPAP49715 358 aaPredicted RBP29.64■■■□□ 2.34
LIME1-205ENST00000480139 TET3O43151 1660 aa29.63■■■□□ 2.33
LIME1-205ENST00000480139 EFCAB6Q5THR3 1501 aa29.62■■■□□ 2.33
LIME1-205ENST00000480139 SETD5Q9C0A6 1442 aa29.61■■■□□ 2.33
LIME1-205ENST00000480139 SETD1BQ9UPS6 1966 aaKnown RBP29.61■■■□□ 2.33
LIME1-205ENST00000480139 PREX1Q8TCU6 1659 aa29.6■■■□□ 2.33
LIME1-205ENST00000480139 NUP155O75694 1391 aa29.59■■■□□ 2.33
LIME1-205ENST00000480139 ACIN1Q9UKV3 1341 aaKnown RBP29.57■■■□□ 2.32
LIME1-205ENST00000480139 PLPPR3Q6T4P5 718 aa29.56■■■□□ 2.32
LIME1-205ENST00000480139 SPATA31D1Q6ZQQ2 1576 aa29.56■■■□□ 2.32
LIME1-205ENST00000480139 RPRD2Q5VT52 1461 aaKnown RBP29.55■■■□□ 2.32
LIME1-205ENST00000480139 ERVK-7P63135 1459 aa29.53■■■□□ 2.32
LIME1-205ENST00000480139 TRIM26Q12899 539 aaPredicted RBP29.51■■■□□ 2.31
LIME1-205ENST00000480139 MYO3AQ8NEV4 1616 aa29.51■■■□□ 2.31
LIME1-205ENST00000480139 E9PCH4 1651 aa29.5■■■□□ 2.31
LIME1-205ENST00000480139 RAB3GAP2Q9H2M9 1393 aa29.5■■■□□ 2.31
LIME1-205ENST00000480139 LMTK3Q96Q04 1460 aa29.48■■■□□ 2.31
LIME1-205ENST00000480139 UHRF1BP1Q6BDS2 1440 aa29.48■■■□□ 2.31
LIME1-205ENST00000480139 FBXO31Q5XUX0 539 aaPredicted RBP29.48■■■□□ 2.31
LIME1-205ENST00000480139 TNRQ92752 1358 aa29.48■■■□□ 2.31
LIME1-205ENST00000480139 ZNF142P52746 1687 aaPredicted RBP29.47■■■□□ 2.31
LIME1-205ENST00000480139 CFAP65Q6ZU64 1925 aaKnown RBP29.46■■■□□ 2.31
LIME1-205ENST00000480139 HRCP23327 699 aa29.45■■■□□ 2.31
LIME1-205ENST00000480139 TRIM52Q96A61 297 aa29.44■■■□□ 2.3
LIME1-205ENST00000480139 NOS1P29475 1434 aa29.44■■■□□ 2.3
LIME1-205ENST00000480139 NLRP1Q9C000 1473 aa29.43■■■□□ 2.3
LIME1-205ENST00000480139 CEP170BQ9Y4F5 1589 aaPredicted RBP29.42■■■□□ 2.3
LIME1-205ENST00000480139 SYNMO15061 1565 aa29.4■■■□□ 2.3
LIME1-205ENST00000480139 A2ML1A8K2U0 1454 aa29.38■■■□□ 2.29
LIME1-205ENST00000480139 SPHKAPQ2M3C7 1700 aa29.36■■■□□ 2.29
LIME1-205ENST00000480139 SLC4A1APQ9BWU0 796 aaKnown RBP29.35■■■□□ 2.29
LIME1-205ENST00000480139 PIK3C2BO00750 1634 aa29.33■■■□□ 2.29
LIME1-205ENST00000480139 KDM5AP29375 1690 aaKnown RBP29.32■■■□□ 2.28
LIME1-205ENST00000480139 PTPRTO14522 1441 aa29.32■■■□□ 2.28
LIME1-205ENST00000480139 PKD2Q13563 968 aa29.3■■■□□ 2.28
LIME1-205ENST00000480139 MPHOSPH9Q99550 1183 aa29.29■■■□□ 2.28
LIME1-205ENST00000480139 UGGT1Q9NYU2 1555 aa29.29■■■□□ 2.28
LIME1-205ENST00000480139 SLC52A1Q9NWF4 448 aa29.28■■■□□ 2.28
LIME1-205ENST00000480139 TRPM2O94759 1503 aa29.28■■■□□ 2.28
LIME1-205ENST00000480139 UBR1Q8IWV7 1749 aa29.28■■■□□ 2.28
LIME1-205ENST00000480139 PLA2R1Q13018 1463 aa29.23■■■□□ 2.27
LIME1-205ENST00000480139 ADGRB3O60242 1522 aa29.23■■■□□ 2.27
LIME1-205ENST00000480139 IDI1Q13907 227 aa29.22■■■□□ 2.27
LIME1-205ENST00000480139 HSPA2P54652 639 aa29.21■■■□□ 2.27
LIME1-205ENST00000480139 THEMISQ8N1K5 641 aaPredicted RBP29.19■■■□□ 2.26
LIME1-205ENST00000480139 CLTCL1P53675 1640 aa29.18■■■□□ 2.26
LIME1-205ENST00000480139 TMEM131LA2VDJ0 1609 aa29.17■■■□□ 2.26
LIME1-205ENST00000480139 STRCQ7RTU9 1775 aa29.16■■■□□ 2.26
LIME1-205ENST00000480139 SLIT1O75093 1534 aa29.15■■■□□ 2.26
LIME1-205ENST00000480139 ARHGAP23Q9P227 1491 aa29.13■■■□□ 2.25
LIME1-205ENST00000480139 FOXD1Q16676 465 aa29.13■■■□□ 2.25
LIME1-205ENST00000480139 POLR1AO95602 1720 aaPredicted RBP29.13■■■□□ 2.25
LIME1-205ENST00000480139 MYO5BQ9ULV0 1848 aa29.13■■■□□ 2.25
LIME1-205ENST00000480139 KIF1BO60333 1816 aa29.11■■■□□ 2.25
LIME1-205ENST00000480139 STAG3Q9UJ98 1225 aa29.11■■■□□ 2.25
LIME1-205ENST00000480139 TMEM2Q9UHN6 1383 aa29.08■■■□□ 2.25
LIME1-205ENST00000480139 CCDC144AA2RUR9 1427 aa29.08■■■□□ 2.25
LIME1-205ENST00000480139 PCGF6Q9BYE7 350 aa29.05■■■□□ 2.24
LIME1-205ENST00000480139 NEURL4Q96JN8 1562 aa29.05■■■□□ 2.24
LIME1-205ENST00000480139 ANKRD30BQ9BXX2 1392 aa29.04■■■□□ 2.24
LIME1-205ENST00000480139 ANKLE2Q86XL3 938 aa29.03■■■□□ 2.24
LIME1-205ENST00000480139 MED14O60244 1454 aa29.02■■■□□ 2.24
LIME1-205ENST00000480139 SCAF11Q99590 1463 aaKnown RBP29.02■■■□□ 2.24
LIME1-205ENST00000480139 ZFYVE9O95405 1425 aa29.02■■■□□ 2.24
LIME1-205ENST00000480139 DMRT2Q9Y5R5 561 aa29■■■□□ 2.23
LIME1-205ENST00000480139 NCKAP5LQ9HCH0 1330 aa28.99■■■□□ 2.23
LIME1-205ENST00000480139 CHGAP10645 457 aaKnown RBP28.99■■■□□ 2.23
LIME1-205ENST00000480139 RIMS2Q9UQ26 1411 aa28.97■■■□□ 2.23
LIME1-205ENST00000480139 EID1Q9Y6B2 187 aa28.97■■■□□ 2.23
LIME1-205ENST00000480139 DHX57Q6P158 1386 aaKnown RBP28.97■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms