RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 EN1Q05925 392 aaPredicted RBP9.93□□□□□ -0.82
UPF3B-203ENST00000478840 NPDC1Q9NQX5 325 aaPredicted RBP9.93□□□□□ -0.82
UPF3B-203ENST00000478840 PHF14O94880 888 aa9.92□□□□□ -0.82
UPF3B-203ENST00000478840 TTLL12Q14166 644 aaPredicted RBP9.91□□□□□ -0.82
UPF3B-203ENST00000478840 GIGYF2Q6Y7W6 1299 aaKnown RBP9.91□□□□□ -0.82
UPF3B-203ENST00000478840 TMUB1Q9BVT8 246 aa9.91□□□□□ -0.82
UPF3B-203ENST00000478840 FLIIQ13045 1269 aa9.89□□□□□ -0.83
UPF3B-203ENST00000478840 FAM163AQ96GL9 167 aaPredicted RBP9.89□□□□□ -0.83
UPF3B-203ENST00000478840 MS4A1P11836 297 aa9.88□□□□□ -0.83
UPF3B-203ENST00000478840 REPIN1Q9BWE0 567 aaKnown RBP9.88□□□□□ -0.83
UPF3B-203ENST00000478840 CDHR5Q9HBB8 845 aa9.88□□□□□ -0.83
UPF3B-203ENST00000478840 ONECUT3O60422 494 aaPredicted RBP9.87□□□□□ -0.83
UPF3B-203ENST00000478840 PCDHGA10Q9Y5H3 936 aa9.86□□□□□ -0.83
UPF3B-203ENST00000478840 KDM4FA0A1W2PPD8 638 aa9.85□□□□□ -0.83
UPF3B-203ENST00000478840 CLCN1P35523 988 aa9.85□□□□□ -0.83
UPF3B-203ENST00000478840 LCE2DQ5TA82 110 aaPredicted RBP9.85□□□□□ -0.83
UPF3B-203ENST00000478840 MAP3K7O43318 606 aa9.84□□□□□ -0.83
UPF3B-203ENST00000478840 TYW1BQ6NUM6 668 aa9.84□□□□□ -0.83
UPF3B-203ENST00000478840 FBXW7Q969H0 707 aa9.84□□□□□ -0.83
UPF3B-203ENST00000478840 SH3D19Q5HYK7 790 aa9.83□□□□□ -0.84
UPF3B-203ENST00000478840 PCMTD1Q96MG8 357 aaPredicted RBP9.83□□□□□ -0.84
UPF3B-203ENST00000478840 GPCPD1Q9NPB8 672 aa9.83□□□□□ -0.84
UPF3B-203ENST00000478840 JPH4Q96JJ6 628 aa9.82□□□□□ -0.84
UPF3B-203ENST00000478840 PHOX2BQ99453 314 aa9.82□□□□□ -0.84
UPF3B-203ENST00000478840 PCDHGA4Q9Y5G9 962 aa9.82□□□□□ -0.84
UPF3B-203ENST00000478840 TSR1Q2NL82 804 aaKnown RBP9.8□□□□□ -0.84
UPF3B-203ENST00000478840 CERKQ8TCT0 537 aa9.8□□□□□ -0.84
UPF3B-203ENST00000478840 MDM2Q00987 491 aaPredicted RBP9.79□□□□□ -0.84
UPF3B-203ENST00000478840 RBM33Q96EV2 1170 aaKnown RBP9.79□□□□□ -0.84
UPF3B-203ENST00000478840 OATP04181 439 aa9.78□□□□□ -0.84
UPF3B-203ENST00000478840 SSTR3P32745 418 aaPredicted RBP9.78□□□□□ -0.84
UPF3B-203ENST00000478840 FOSBP53539 338 aa9.78□□□□□ -0.84
UPF3B-203ENST00000478840 RBM27Q9P2N5 1060 aaKnown RBP9.78□□□□□ -0.84
UPF3B-203ENST00000478840 A6NJR5 290 aa9.77□□□□□ -0.85
UPF3B-203ENST00000478840 ST18O60284 1047 aa9.77□□□□□ -0.85
UPF3B-203ENST00000478840 SKIV2LQ15477 1246 aaKnown RBP9.77□□□□□ -0.85
UPF3B-203ENST00000478840 METTL3Q86U44 580 aaKnown RBP9.77□□□□□ -0.85
UPF3B-203ENST00000478840 TTC13Q8NBP0 860 aa9.77□□□□□ -0.85
UPF3B-203ENST00000478840 SNPHO15079 494 aa9.76□□□□□ -0.85
UPF3B-203ENST00000478840 HOXB3P14651 431 aaPredicted RBP9.76□□□□□ -0.85
UPF3B-203ENST00000478840 C1orf115Q9H7X2 142 aa9.76□□□□□ -0.85
UPF3B-203ENST00000478840 FAM217BQ9NTX9 383 aaPredicted RBP9.76□□□□□ -0.85
UPF3B-203ENST00000478840 ADGRG1Q9Y653 693 aa9.75□□□□□ -0.85
UPF3B-203ENST00000478840 PXYLP1Q8TE99 480 aa9.74□□□□□ -0.85
UPF3B-203ENST00000478840 UBTFP17480 764 aaKnown RBP9.73□□□□□ -0.85
UPF3B-203ENST00000478840 C6orf132Q5T0Z8 1188 aa9.73□□□□□ -0.85
UPF3B-203ENST00000478840 BEGAINQ9BUH8 593 aa9.73□□□□□ -0.85
UPF3B-203ENST00000478840 MCM6Q14566 821 aa9.72□□□□□ -0.85
UPF3B-203ENST00000478840 PADI6Q6TGC4 694 aa9.72□□□□□ -0.85
UPF3B-203ENST00000478840 ZDHHC16Q969W1 377 aa9.72□□□□□ -0.85
UPF3B-203ENST00000478840 MARVELD3Q96A59 401 aa9.72□□□□□ -0.85
UPF3B-203ENST00000478840 POTEMA6NI47 508 aa9.71□□□□□ -0.86
UPF3B-203ENST00000478840 POTEGQ6S5H5 508 aa9.7□□□□□ -0.86
UPF3B-203ENST00000478840 FAM161AQ3B820 660 aa9.69□□□□□ -0.86
UPF3B-203ENST00000478840 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.69□□□□□ -0.86
UPF3B-203ENST00000478840 PCDH10Q9P2E7 1040 aa9.69□□□□□ -0.86
UPF3B-203ENST00000478840 TRAK2O60296 914 aa9.68□□□□□ -0.86
UPF3B-203ENST00000478840 KHSRPQ92945 711 aaKnown RBP eCLIP9.68□□□□□ -0.862e-6■■■□□ 15.2
UPF3B-203ENST00000478840 APBB1O00213 710 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 PRSS12P56730 875 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 MYSM1Q5VVJ2 828 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 ZNF454Q8N9F8 522 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 CLUAP1Q96AJ1 413 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 ZSWIM6Q9HCJ5 1215 aa9.67□□□□□ -0.86
UPF3B-203ENST00000478840 DIXDC1Q155Q3 683 aa9.66□□□□□ -0.86
UPF3B-203ENST00000478840 ZNF710Q8N1W2 664 aa9.66□□□□□ -0.86
UPF3B-203ENST00000478840 PROCA1Q8NCQ7 364 aaPredicted RBP9.66□□□□□ -0.86
UPF3B-203ENST00000478840 ADAM33Q9BZ11 813 aa9.66□□□□□ -0.86
UPF3B-203ENST00000478840 ARID3CA6NKF2 412 aa9.65□□□□□ -0.86
UPF3B-203ENST00000478840 DOK7Q18PE1 504 aa9.65□□□□□ -0.86
UPF3B-203ENST00000478840 RBM46Q8TBY0 533 aaKnown RBP9.64□□□□□ -0.87
UPF3B-203ENST00000478840 NLRP7Q8WX94 980 aa9.64□□□□□ -0.87
UPF3B-203ENST00000478840 CDCA7LQ96GN5 454 aa9.64□□□□□ -0.87
UPF3B-203ENST00000478840 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.63□□□□□ -0.87
UPF3B-203ENST00000478840 NUDT7P0C024 238 aa9.63□□□□□ -0.87
UPF3B-203ENST00000478840 CLK2P49760 499 aaKnown RBP9.63□□□□□ -0.87
UPF3B-203ENST00000478840 ARSIQ5FYB1 569 aa9.63□□□□□ -0.87
UPF3B-203ENST00000478840 POLR3EQ9NVU0 708 aa9.63□□□□□ -0.87
UPF3B-203ENST00000478840 POTEB3A0JP26 581 aa9.62□□□□□ -0.87
UPF3B-203ENST00000478840 GPR153Q6NV75 609 aa9.62□□□□□ -0.87
UPF3B-203ENST00000478840 POTEBQ6S5H4 581 aa9.62□□□□□ -0.87
UPF3B-203ENST00000478840 FNBP4Q8N3X1 1017 aaPredicted RBP9.62□□□□□ -0.87
UPF3B-203ENST00000478840 BANK1Q8NDB2 785 aa9.62□□□□□ -0.87
UPF3B-203ENST00000478840 TBC1D2Q9BYX2 928 aa9.62□□□□□ -0.87
UPF3B-203ENST00000478840 SPDYE5A6NIY4 337 aa9.61□□□□□ -0.87
UPF3B-203ENST00000478840 EMP3P54852 163 aa9.61□□□□□ -0.87
UPF3B-203ENST00000478840 TUSC1Q2TAM9 212 aa9.61□□□□□ -0.87
UPF3B-203ENST00000478840 ARID3AQ99856 593 aa9.61□□□□□ -0.87
UPF3B-203ENST00000478840 RIMBP2O15034 1052 aa9.6□□□□□ -0.87
UPF3B-203ENST00000478840 PPP2R2DQ66LE6 453 aa9.6□□□□□ -0.87
UPF3B-203ENST00000478840 PROSER2Q86WR7 435 aaPredicted RBP9.6□□□□□ -0.87
UPF3B-203ENST00000478840 EYA1Q99502 592 aa9.6□□□□□ -0.87
UPF3B-203ENST00000478840 FAM205CA6NFA0 338 aa9.59□□□□□ -0.87
UPF3B-203ENST00000478840 HOXB1P14653 301 aaPredicted RBP9.59□□□□□ -0.87
UPF3B-203ENST00000478840 BCL2L12Q9HB09 334 aa9.59□□□□□ -0.87
UPF3B-203ENST00000478840 FAM198AQ9UFP1 575 aa9.59□□□□□ -0.87
UPF3B-203ENST00000478840 PSDA5PKW4 1024 aaPredicted RBP9.58□□□□□ -0.88
UPF3B-203ENST00000478840 RCCD1A6NED2 376 aa9.57□□□□□ -0.88
UPF3B-203ENST00000478840 CD46P15529 392 aa9.57□□□□□ -0.88
UPF3B-203ENST00000478840 RFC5P40937 340 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms