RNA–Protein interactions for RNA: ENST00000476777.5

BRCA1-213, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 5

Gene BRCA1, Length 769 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-213ENST00000476777 FBXO31Q5XUX0 539 aaPredicted RBP18.49■□□□□ 0.55
BRCA1-213ENST00000476777 DHX29Q7Z478 1369 aaKnown RBP18.49■□□□□ 0.55
BRCA1-213ENST00000476777 CPS1P31327 1500 aa18.49■□□□□ 0.55
BRCA1-213ENST00000476777 RTEL1-TNFRSF6BF6WH68 1400 aa18.49■□□□□ 0.55
BRCA1-213ENST00000476777 SCAF1Q9H7N4 1312 aaKnown RBP18.49■□□□□ 0.55
BRCA1-213ENST00000476777 NEURL4Q96JN8 1562 aa18.48■□□□□ 0.55
BRCA1-213ENST00000476777 TNRQ92752 1358 aa18.48■□□□□ 0.55
BRCA1-213ENST00000476777 POTEDQ86YR6 584 aa18.48■□□□□ 0.55
BRCA1-213ENST00000476777 MED1Q15648 1581 aaPredicted RBP18.47■□□□□ 0.55
BRCA1-213ENST00000476777 SHANK2Q9UPX8 1470 aa18.47■□□□□ 0.55
BRCA1-213ENST00000476777 TIAM1Q13009 1591 aa18.47■□□□□ 0.55
BRCA1-213ENST00000476777 POLR1AO95602 1720 aaPredicted RBP18.46■□□□□ 0.55
BRCA1-213ENST00000476777 KIF3BO15066 747 aa18.45■□□□□ 0.54
BRCA1-213ENST00000476777 PZPP20742 1482 aa18.45■□□□□ 0.54
BRCA1-213ENST00000476777 ANKLE2Q86XL3 938 aa18.44■□□□□ 0.54
BRCA1-213ENST00000476777 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.42■□□□□ 0.54
BRCA1-213ENST00000476777 KDM5DQ9BY66 1539 aa18.42■□□□□ 0.54
BRCA1-213ENST00000476777 VWDEQ8N2E2 1590 aa18.42■□□□□ 0.54
BRCA1-213ENST00000476777 FAM135AQ9P2D6 1515 aa18.41■□□□□ 0.54
BRCA1-213ENST00000476777 THEMISQ8N1K5 641 aaPredicted RBP18.41■□□□□ 0.54
BRCA1-213ENST00000476777 WASHC2CQ9Y4E1 1318 aa18.41■□□□□ 0.54
BRCA1-213ENST00000476777 CEP162Q5TB80 1403 aa18.4■□□□□ 0.54
BRCA1-213ENST00000476777 MIA2Q96PC5 1412 aa18.4■□□□□ 0.54
BRCA1-213ENST00000476777 EHBP1L1Q8N3D4 1523 aa18.4■□□□□ 0.54
BRCA1-213ENST00000476777 ALKQ9UM73 1620 aa18.39■□□□□ 0.53
BRCA1-213ENST00000476777 MED14O60244 1454 aa18.39■□□□□ 0.53
BRCA1-213ENST00000476777 CCDC141Q6ZP82 1450 aa18.39■□□□□ 0.53
BRCA1-213ENST00000476777 NLRP1Q9C000 1473 aa18.39■□□□□ 0.53
BRCA1-213ENST00000476777 NPHP4O75161 1426 aaPredicted RBP18.38■□□□□ 0.53
BRCA1-213ENST00000476777 UGGT1Q9NYU2 1555 aa18.37■□□□□ 0.53
BRCA1-213ENST00000476777 DEPDC5O75140 1603 aa18.36■□□□□ 0.53
BRCA1-213ENST00000476777 RSPH4AQ5TD94 716 aa18.36■□□□□ 0.53
BRCA1-213ENST00000476777 CAMSAP2Q08AD1 1489 aa18.34■□□□□ 0.53
BRCA1-213ENST00000476777 MSH5O43196 834 aa18.34■□□□□ 0.53
BRCA1-213ENST00000476777 NCOA2Q15596 1464 aa18.32■□□□□ 0.52
BRCA1-213ENST00000476777 IQGAP1P46940 1657 aa18.31■□□□□ 0.52
BRCA1-213ENST00000476777 STRCP1A6NGW2 1772 aa18.3■□□□□ 0.52
BRCA1-213ENST00000476777 LRRC7Q96NW7 1537 aa18.3■□□□□ 0.52
BRCA1-213ENST00000476777 TSPY4P0CV99 314 aa18.28■□□□□ 0.52
BRCA1-213ENST00000476777 TSPY10P0CW01 314 aa18.28■□□□□ 0.52
BRCA1-213ENST00000476777 ARHGEF5Q12774 1597 aa18.28■□□□□ 0.52
BRCA1-213ENST00000476777 ABCC3O15438 1527 aa18.27■□□□□ 0.51
BRCA1-213ENST00000476777 RNF17Q9BXT8 1623 aaKnown RBP18.25■□□□□ 0.51
BRCA1-213ENST00000476777 ERVK-7P63135 1459 aa18.25■□□□□ 0.51
BRCA1-213ENST00000476777 SYNMO15061 1565 aa18.24■□□□□ 0.51
BRCA1-213ENST00000476777 PIAS4Q8N2W9 510 aaPredicted RBP18.22■□□□□ 0.51
BRCA1-213ENST00000476777 RGS17Q9UGC6 210 aaPredicted RBP18.22■□□□□ 0.51
BRCA1-213ENST00000476777 ZC3H13Q5T200 1668 aaKnown RBP18.22■□□□□ 0.51
BRCA1-213ENST00000476777 CFAP65Q6ZU64 1925 aaKnown RBP18.21■□□□□ 0.51
BRCA1-213ENST00000476777 LTKP29376 864 aa18.2■□□□□ 0.5
BRCA1-213ENST00000476777 SCAF11Q99590 1463 aaKnown RBP18.2■□□□□ 0.5
BRCA1-213ENST00000476777 UBR1Q8IWV7 1749 aa18.19■□□□□ 0.5
BRCA1-213ENST00000476777 MAST1Q9Y2H9 1570 aa18.19■□□□□ 0.5
BRCA1-213ENST00000476777 MROH1Q8NDA8 1641 aa18.19■□□□□ 0.5
BRCA1-213ENST00000476777 EIF2AK4Q9P2K8 1649 aaKnown RBP18.18■□□□□ 0.5
BRCA1-213ENST00000476777 TXNDC2Q86VQ3 553 aa18.17■□□□□ 0.5
BRCA1-213ENST00000476777 ARHGAP23Q9P227 1491 aa18.17■□□□□ 0.5
BRCA1-213ENST00000476777 SLIT1O75093 1534 aa18.16■□□□□ 0.5
BRCA1-213ENST00000476777 CEP152O94986 1710 aa18.15■□□□□ 0.5
BRCA1-213ENST00000476777 XIRP1Q702N8 1843 aaKnown RBP18.14■□□□□ 0.5
BRCA1-213ENST00000476777 LRRC9Q6ZRR7 1453 aa18.14■□□□□ 0.49
BRCA1-213ENST00000476777 ADRA2BP18089 450 aa18.13■□□□□ 0.49
BRCA1-213ENST00000476777 ARHGAP31Q2M1Z3 1444 aa18.12■□□□□ 0.49
BRCA1-213ENST00000476777 FAM135BQ49AJ0 1406 aa18.12■□□□□ 0.49
BRCA1-213ENST00000476777 EID1Q9Y6B2 187 aa18.11■□□□□ 0.49
BRCA1-213ENST00000476777 DUOX2Q9NRD8 1548 aa18.11■□□□□ 0.49
BRCA1-213ENST00000476777 TMEM2Q9UHN6 1383 aa18.09■□□□□ 0.49
BRCA1-213ENST00000476777 POTEAQ6S8J7 498 aa18.08■□□□□ 0.48
BRCA1-213ENST00000476777 PRDM15P57071 1507 aaPredicted RBP18.08■□□□□ 0.48
BRCA1-213ENST00000476777 MYOM3Q5VTT5 1437 aa18.07■□□□□ 0.48
BRCA1-213ENST00000476777 TMEM94Q12767 1356 aa18.07■□□□□ 0.48
BRCA1-213ENST00000476777 KANK4Q5T7N3 995 aaPredicted RBP18.07■□□□□ 0.48
BRCA1-213ENST00000476777 KIF15Q9NS87 1388 aa18.06■□□□□ 0.48
BRCA1-213ENST00000476777 PIK3C2BO00750 1634 aa18.05■□□□□ 0.48
BRCA1-213ENST00000476777 KCNA6P17658 529 aa18.05■□□□□ 0.48
BRCA1-213ENST00000476777 VPS8Q8N3P4 1428 aa18.05■□□□□ 0.48
BRCA1-213ENST00000476777 STAG3Q9UJ98 1225 aa18.04■□□□□ 0.48
BRCA1-213ENST00000476777 ERBINQ96RT1 1412 aa18.04■□□□□ 0.48
BRCA1-213ENST00000476777 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.03■□□□□ 0.481e-6■■■■□ 21.6
BRCA1-213ENST00000476777 RRP7BPQ9NSQ0 103 aa18.03■□□□□ 0.48
BRCA1-213ENST00000476777 IDI1Q13907 227 aa18.02■□□□□ 0.48
BRCA1-213ENST00000476777 MAP3K1Q13233 1512 aa18.02■□□□□ 0.47
BRCA1-213ENST00000476777 ABCC5O15440 1437 aa18.01■□□□□ 0.47
BRCA1-213ENST00000476777 PROSER2Q86WR7 435 aaPredicted RBP18.01■□□□□ 0.47
BRCA1-213ENST00000476777 RBM33Q96EV2 1170 aaKnown RBP18.01■□□□□ 0.47
BRCA1-213ENST00000476777 TET3O43151 1660 aa18.01■□□□□ 0.47
BRCA1-213ENST00000476777 ROBO1Q9Y6N7 1651 aa18.01■□□□□ 0.47
BRCA1-213ENST00000476777 EFCAB6Q5THR3 1501 aa18.01■□□□□ 0.47
BRCA1-213ENST00000476777 SLC26A8Q96RN1 970 aa18■□□□□ 0.47
BRCA1-213ENST00000476777 KDM5AP29375 1690 aaKnown RBP17.99■□□□□ 0.47
BRCA1-213ENST00000476777 KANK1Q14678 1352 aa17.98■□□□□ 0.47
BRCA1-213ENST00000476777 LMTK2Q8IWU2 1503 aa17.97■□□□□ 0.47
BRCA1-213ENST00000476777 CROCC2H7BZ55 1655 aa17.96■□□□□ 0.47
BRCA1-213ENST00000476777 NKTRP30414 1462 aaKnown RBP17.95■□□□□ 0.46
BRCA1-213ENST00000476777 SLAIN2Q9P270 581 aa17.94■□□□□ 0.46
BRCA1-213ENST00000476777 NOS1P29475 1434 aa17.94■□□□□ 0.46
BRCA1-213ENST00000476777 DAPK1P53355 1430 aa17.94■□□□□ 0.46
BRCA1-213ENST00000476777 NWD1Q149M9 1564 aa17.94■□□□□ 0.46
BRCA1-213ENST00000476777 MSH6P52701 1360 aa17.93■□□□□ 0.46
BRCA1-213ENST00000476777 PTPN23Q9H3S7 1636 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms