RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-223ENST00000475146 DUOX2Q9NRD8 1548 aa37.05■■■■□ 3.52
CPNE1-223ENST00000475146 RRP7BPQ9NSQ0 103 aa37.03■■■■□ 3.52
CPNE1-223ENST00000475146 KDM5DQ9BY66 1539 aa37.03■■■■□ 3.52
CPNE1-223ENST00000475146 EIF2AK4Q9P2K8 1649 aaKnown RBP37.03■■■■□ 3.52
CPNE1-223ENST00000475146 NPATQ14207 1427 aa37.02■■■■□ 3.52
CPNE1-223ENST00000475146 CHIC2Q9UKJ5 165 aa37.02■■■■□ 3.52
CPNE1-223ENST00000475146 FAM135AQ9P2D6 1515 aa37.01■■■■□ 3.52
CPNE1-223ENST00000475146 RNF17Q9BXT8 1623 aaKnown RBP36.99■■■■□ 3.51
CPNE1-223ENST00000475146 WASHC2CQ9Y4E1 1318 aa36.99■■■■□ 3.51
CPNE1-223ENST00000475146 ANKRD30AQ9BXX3 1397 aa36.99■■■■□ 3.51
CPNE1-223ENST00000475146 PTPRKQ15262 1439 aa36.96■■■■□ 3.51
CPNE1-223ENST00000475146 ERBINQ96RT1 1412 aa36.94■■■■□ 3.5
CPNE1-223ENST00000475146 NCOA1Q15788 1441 aa36.9■■■■□ 3.5
CPNE1-223ENST00000475146 MROH1Q8NDA8 1641 aa36.88■■■■□ 3.5
CPNE1-223ENST00000475146 ADGRL2O95490 1459 aa36.88■■■■□ 3.5
CPNE1-223ENST00000475146 ABCC3O15438 1527 aa36.86■■■■□ 3.49
CPNE1-223ENST00000475146 PZPP20742 1482 aa36.86■■■■□ 3.49
CPNE1-223ENST00000475146 ZC3H13Q5T200 1668 aaKnown RBP36.86■■■■□ 3.49
CPNE1-223ENST00000475146 MYO3AQ8NEV4 1616 aa36.85■■■■□ 3.49
CPNE1-223ENST00000475146 FBXO31Q5XUX0 539 aaPredicted RBP36.81■■■■□ 3.48
CPNE1-223ENST00000475146 PRDM15P57071 1507 aaPredicted RBP36.8■■■■□ 3.48
CPNE1-223ENST00000475146 CEP152O94986 1710 aa36.79■■■■□ 3.48
CPNE1-223ENST00000475146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.78■■■■□ 3.48
CPNE1-223ENST00000475146 TNRQ92752 1358 aa36.78■■■■□ 3.48
CPNE1-223ENST00000475146 ZNF142P52746 1687 aaPredicted RBP36.77■■■■□ 3.48
CPNE1-223ENST00000475146 CEP170BQ9Y4F5 1589 aaPredicted RBP36.76■■■■□ 3.48
CPNE1-223ENST00000475146 DEPDC5O75140 1603 aa36.75■■■■□ 3.47
CPNE1-223ENST00000475146 ITGAEP38570 1179 aa36.75■■■■□ 3.47
CPNE1-223ENST00000475146 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.75■■■■□ 3.477e-10■■□□□ 13.2
CPNE1-223ENST00000475146 KANK1Q14678 1352 aa36.73■■■■□ 3.47
CPNE1-223ENST00000475146 CAMSAP1Q5T5Y3 1602 aa36.73■■■■□ 3.47
CPNE1-223ENST00000475146 STRCQ7RTU9 1775 aa36.71■■■■□ 3.47
CPNE1-223ENST00000475146 ANKRD50Q9ULJ7 1429 aa36.71■■■■□ 3.47
CPNE1-223ENST00000475146 A2ML1A8K2U0 1454 aa36.69■■■■□ 3.46
CPNE1-223ENST00000475146 RRBP1Q9P2E9 1410 aaKnown RBP36.68■■■■□ 3.46
CPNE1-223ENST00000475146 ROCK1Q13464 1354 aa36.67■■■■□ 3.46
CPNE1-223ENST00000475146 DMRT2Q9Y5R5 561 aa36.65■■■■□ 3.46
CPNE1-223ENST00000475146 ERVK-7P63135 1459 aa36.64■■■■□ 3.46
CPNE1-223ENST00000475146 SPATA31D1Q6ZQQ2 1576 aa36.63■■■■□ 3.45
CPNE1-223ENST00000475146 NLRP1Q9C000 1473 aa36.61■■■■□ 3.45
CPNE1-223ENST00000475146 VWDEQ8N2E2 1590 aa36.6■■■■□ 3.45
CPNE1-223ENST00000475146 ARHGAP31Q2M1Z3 1444 aa36.59■■■■□ 3.45
CPNE1-223ENST00000475146 PLA2R1Q13018 1463 aa36.58■■■■□ 3.45
CPNE1-223ENST00000475146 LMTK2Q8IWU2 1503 aa36.57■■■■□ 3.44
CPNE1-223ENST00000475146 CFAP65Q6ZU64 1925 aaKnown RBP36.57■■■■□ 3.44
CPNE1-223ENST00000475146 PTPRTO14522 1441 aa36.55■■■■□ 3.44
CPNE1-223ENST00000475146 NCKAP5LQ9HCH0 1330 aa36.55■■■■□ 3.44
CPNE1-223ENST00000475146 UGGT1Q9NYU2 1555 aa36.51■■■■□ 3.44
CPNE1-223ENST00000475146 PKD2Q13563 968 aa36.5■■■■□ 3.43
CPNE1-223ENST00000475146 UNC13BO14795 1591 aa36.49■■■■□ 3.43
CPNE1-223ENST00000475146 EFCAB6Q5THR3 1501 aa36.49■■■■□ 3.43
CPNE1-223ENST00000475146 THEMISQ8N1K5 641 aaPredicted RBP36.46■■■■□ 3.43
CPNE1-223ENST00000475146 TET3O43151 1660 aa36.4■■■■□ 3.42
CPNE1-223ENST00000475146 POLR1AO95602 1720 aaPredicted RBP36.38■■■■□ 3.41
CPNE1-223ENST00000475146 ILDR1Q86SU0 546 aaPredicted RBP36.38■■■■□ 3.41
CPNE1-223ENST00000475146 RPRD2Q5VT52 1461 aaKnown RBP36.36■■■■□ 3.41
CPNE1-223ENST00000475146 ANKLE2Q86XL3 938 aa36.35■■■■□ 3.41
CPNE1-223ENST00000475146 NUP155O75694 1391 aa36.35■■■■□ 3.41
CPNE1-223ENST00000475146 IQGAP3Q86VI3 1631 aa36.34■■■■□ 3.41
CPNE1-223ENST00000475146 UBR1Q8IWV7 1749 aa36.34■■■■□ 3.41
CPNE1-223ENST00000475146 GCC2Q8IWJ2 1684 aa36.34■■■■□ 3.41
CPNE1-223ENST00000475146 NOS1P29475 1434 aa36.34■■■■□ 3.41
CPNE1-223ENST00000475146 SYNMO15061 1565 aa36.33■■■■□ 3.41
CPNE1-223ENST00000475146 CERKQ8TCT0 537 aa36.33■■■■□ 3.41
CPNE1-223ENST00000475146 NEURL4Q96JN8 1562 aa36.32■■■■□ 3.4
CPNE1-223ENST00000475146 NAIPQ13075 1403 aa36.31■■■■□ 3.4
CPNE1-223ENST00000475146 PIK3C2BO00750 1634 aa36.3■■■■□ 3.4
CPNE1-223ENST00000475146 STAG3Q9UJ98 1225 aa36.29■■■■□ 3.4
CPNE1-223ENST00000475146 IDI1Q13907 227 aa36.26■■■■□ 3.4
CPNE1-223ENST00000475146 FBXO41Q8TF61 875 aa36.26■■■■□ 3.4
CPNE1-223ENST00000475146 HFM1A2PYH4 1435 aa36.25■■■■□ 3.39
CPNE1-223ENST00000475146 E9PCH4 1651 aa36.24■■■■□ 3.39
CPNE1-223ENST00000475146 NPHP4O75161 1426 aaPredicted RBP36.23■■■■□ 3.39
CPNE1-223ENST00000475146 ZNF335Q9H4Z2 1342 aaPredicted RBP36.22■■■■□ 3.39
CPNE1-223ENST00000475146 LTBP4Q8N2S1 1624 aa36.22■■■■□ 3.39
CPNE1-223ENST00000475146 SLC52A1Q9NWF4 448 aa36.21■■■■□ 3.39
CPNE1-223ENST00000475146 MED14O60244 1454 aa36.2■■■■□ 3.39
CPNE1-223ENST00000475146 SLIT1O75093 1534 aa36.18■■■■□ 3.38
CPNE1-223ENST00000475146 SCAF11Q99590 1463 aaKnown RBP36.18■■■■□ 3.38
CPNE1-223ENST00000475146 ADGRB3O60242 1522 aa36.18■■■■□ 3.38
CPNE1-223ENST00000475146 ARHGAP23Q9P227 1491 aa36.18■■■■□ 3.38
CPNE1-223ENST00000475146 KDM5AP29375 1690 aaKnown RBP36.17■■■■□ 3.38
CPNE1-223ENST00000475146 IQGAP1P46940 1657 aa36.16■■■■□ 3.38
CPNE1-223ENST00000475146 TXNDC2Q86VQ3 553 aa36.15■■■■□ 3.38
CPNE1-223ENST00000475146 TMEM2Q9UHN6 1383 aa36.15■■■■□ 3.38
CPNE1-223ENST00000475146 EID1Q9Y6B2 187 aa36.14■■■■□ 3.38
CPNE1-223ENST00000475146 LTKP29376 864 aa36.11■■■■□ 3.37
CPNE1-223ENST00000475146 TRIM52Q96A61 297 aa36.1■■■■□ 3.37
CPNE1-223ENST00000475146 CHGAP10645 457 aaKnown RBP36.04■■■■□ 3.36
CPNE1-223ENST00000475146 IQSEC2Q5JU85 1478 aa36.02■■■■□ 3.36
CPNE1-223ENST00000475146 TMEM131LA2VDJ0 1609 aa36.01■■■■□ 3.36
CPNE1-223ENST00000475146 SPHKAPQ2M3C7 1700 aa36.01■■■■□ 3.36
CPNE1-223ENST00000475146 MYO5BQ9ULV0 1848 aa36■■■■□ 3.35
CPNE1-223ENST00000475146 CPS1P31327 1500 aa35.98■■■■□ 3.35
CPNE1-223ENST00000475146 RIMS2Q9UQ26 1411 aa35.94■■■■□ 3.34
CPNE1-223ENST00000475146 SLC4A1APQ9BWU0 796 aaKnown RBP35.94■■■■□ 3.34
CPNE1-223ENST00000475146 ZFYVE9O95405 1425 aa35.92■■■■□ 3.34
CPNE1-223ENST00000475146 PPP1R15AO75807 674 aaPredicted RBP35.91■■■■□ 3.34
CPNE1-223ENST00000475146 HDGFP51858 240 aaKnown RBP35.9■■■■□ 3.34
CPNE1-223ENST00000475146 BCANQ96GW7 911 aa35.89■■■■□ 3.34
Retrieved 100 of 20,778 RNA–protein pairs in 263 ms