RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 MROH1Q8NDA8 1641 aa25.83■■□□□ 1.73
SCAF11-206ENST00000474828 RIMS1Q86UR5 1692 aaKnown RBP25.83■■□□□ 1.73
SCAF11-206ENST00000474828 DEPDC5O75140 1603 aa25.81■■□□□ 1.72
SCAF11-206ENST00000474828 MROH2AA6NES4 1674 aa25.81■■□□□ 1.72
SCAF11-206ENST00000474828 KDM5DQ9BY66 1539 aa25.81■■□□□ 1.72
SCAF11-206ENST00000474828 ANKRD50Q9ULJ7 1429 aa25.79■■□□□ 1.72
SCAF11-206ENST00000474828 PRDM15P57071 1507 aaPredicted RBP25.78■■□□□ 1.72
SCAF11-206ENST00000474828 GGT6Q6P531 493 aa25.78■■□□□ 1.72
SCAF11-206ENST00000474828 VWDEQ8N2E2 1590 aa25.74■■□□□ 1.71
SCAF11-206ENST00000474828 ZMYM3Q14202 1370 aa25.72■■□□□ 1.71
SCAF11-206ENST00000474828 C3P01024 1663 aa25.72■■□□□ 1.71
SCAF11-206ENST00000474828 ZC3H13Q5T200 1668 aaKnown RBP25.72■■□□□ 1.71
SCAF11-206ENST00000474828 NAIPQ13075 1403 aa25.71■■□□□ 1.71
SCAF11-206ENST00000474828 CLTCQ00610 1675 aaKnown RBP25.71■■□□□ 1.71
SCAF11-206ENST00000474828 ITGAEP38570 1179 aa25.71■■□□□ 1.71
SCAF11-206ENST00000474828 ABCC3O15438 1527 aa25.71■■□□□ 1.71
SCAF11-206ENST00000474828 HFM1A2PYH4 1435 aa25.71■■□□□ 1.71
SCAF11-206ENST00000474828 LMTK2Q8IWU2 1503 aa25.69■■□□□ 1.7
SCAF11-206ENST00000474828 ESF1Q9H501 851 aaKnown RBP25.69■■□□□ 1.7
SCAF11-206ENST00000474828 NPATQ14207 1427 aa25.68■■□□□ 1.7
SCAF11-206ENST00000474828 UNC13BO14795 1591 aa25.67■■□□□ 1.7
SCAF11-206ENST00000474828 ILDR1Q86SU0 546 aaPredicted RBP25.67■■□□□ 1.7
SCAF11-206ENST00000474828 WASHC2CQ9Y4E1 1318 aa25.66■■□□□ 1.7
SCAF11-206ENST00000474828 GCC2Q8IWJ2 1684 aa25.66■■□□□ 1.7
SCAF11-206ENST00000474828 ARHGAP31Q2M1Z3 1444 aa25.65■■□□□ 1.7
SCAF11-206ENST00000474828 PZPP20742 1482 aa25.65■■□□□ 1.7
SCAF11-206ENST00000474828 CEBPAP49715 358 aaPredicted RBP25.64■■□□□ 1.7
SCAF11-206ENST00000474828 KANK1Q14678 1352 aa25.6■■□□□ 1.69
SCAF11-206ENST00000474828 CAMSAP1Q5T5Y3 1602 aa25.59■■□□□ 1.69
SCAF11-206ENST00000474828 CEP152O94986 1710 aa25.58■■□□□ 1.69
SCAF11-206ENST00000474828 SETD1BQ9UPS6 1966 aaKnown RBP25.58■■□□□ 1.69
SCAF11-206ENST00000474828 LMTK3Q96Q04 1460 aa25.56■■□□□ 1.68
SCAF11-206ENST00000474828 IQGAP3Q86VI3 1631 aa25.55■■□□□ 1.68
SCAF11-206ENST00000474828 EFCAB6Q5THR3 1501 aa25.54■■□□□ 1.68
SCAF11-206ENST00000474828 SPATA31D1Q6ZQQ2 1576 aa25.54■■□□□ 1.68
SCAF11-206ENST00000474828 PREX1Q8TCU6 1659 aa25.54■■□□□ 1.68
SCAF11-206ENST00000474828 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.53■■□□□ 1.686e-8■□□□□ 11.1
SCAF11-206ENST00000474828 RPRD2Q5VT52 1461 aaKnown RBP25.51■■□□□ 1.67
SCAF11-206ENST00000474828 TET3O43151 1660 aa25.51■■□□□ 1.67
SCAF11-206ENST00000474828 ERVK-7P63135 1459 aa25.5■■□□□ 1.67
SCAF11-206ENST00000474828 FBXO31Q5XUX0 539 aaPredicted RBP25.49■■□□□ 1.67
SCAF11-206ENST00000474828 UHRF1BP1Q6BDS2 1440 aa25.48■■□□□ 1.67
SCAF11-206ENST00000474828 NUP155O75694 1391 aa25.48■■□□□ 1.67
SCAF11-206ENST00000474828 ACIN1Q9UKV3 1341 aaKnown RBP25.47■■□□□ 1.67
SCAF11-206ENST00000474828 NOS1P29475 1434 aa25.46■■□□□ 1.67
SCAF11-206ENST00000474828 SETD5Q9C0A6 1442 aa25.46■■□□□ 1.67
SCAF11-206ENST00000474828 TNRQ92752 1358 aa25.46■■□□□ 1.67
SCAF11-206ENST00000474828 MYO3AQ8NEV4 1616 aa25.45■■□□□ 1.67
SCAF11-206ENST00000474828 ZNF142P52746 1687 aaPredicted RBP25.45■■□□□ 1.66
SCAF11-206ENST00000474828 PLPPR3Q6T4P5 718 aa25.44■■□□□ 1.66
SCAF11-206ENST00000474828 NLRP1Q9C000 1473 aa25.43■■□□□ 1.66
SCAF11-206ENST00000474828 HRCP23327 699 aa25.42■■□□□ 1.66
SCAF11-206ENST00000474828 A2ML1A8K2U0 1454 aa25.4■■□□□ 1.66
SCAF11-206ENST00000474828 CEP170BQ9Y4F5 1589 aaPredicted RBP25.39■■□□□ 1.66
SCAF11-206ENST00000474828 E9PCH4 1651 aa25.39■■□□□ 1.66
SCAF11-206ENST00000474828 SYNMO15061 1565 aa25.37■■□□□ 1.65
SCAF11-206ENST00000474828 RAB3GAP2Q9H2M9 1393 aa25.36■■□□□ 1.65
SCAF11-206ENST00000474828 PTPRTO14522 1441 aa25.35■■□□□ 1.65
SCAF11-206ENST00000474828 PIK3C2BO00750 1634 aa25.31■■□□□ 1.64
SCAF11-206ENST00000474828 SLC52A1Q9NWF4 448 aa25.31■■□□□ 1.64
SCAF11-206ENST00000474828 PLA2R1Q13018 1463 aa25.31■■□□□ 1.64
SCAF11-206ENST00000474828 KDM5AP29375 1690 aaKnown RBP25.31■■□□□ 1.64
SCAF11-206ENST00000474828 HSPA2P54652 639 aa25.29■■□□□ 1.64
SCAF11-206ENST00000474828 TRIM26Q12899 539 aaPredicted RBP25.28■■□□□ 1.64
SCAF11-206ENST00000474828 UGGT1Q9NYU2 1555 aa25.27■■□□□ 1.64
SCAF11-206ENST00000474828 TRIM52Q96A61 297 aa25.27■■□□□ 1.64
SCAF11-206ENST00000474828 CFAP65Q6ZU64 1925 aaKnown RBP25.27■■□□□ 1.64
SCAF11-206ENST00000474828 IDI1Q13907 227 aa25.26■■□□□ 1.63
SCAF11-206ENST00000474828 SENP3Q9H4L4 574 aaPredicted RBP25.26■■□□□ 1.63
SCAF11-206ENST00000474828 UBR1Q8IWV7 1749 aa25.26■■□□□ 1.63
SCAF11-206ENST00000474828 FBXO41Q8TF61 875 aa25.25■■□□□ 1.63
SCAF11-206ENST00000474828 PHF23Q9BUL5 403 aaPredicted RBP25.25■■□□□ 1.63
SCAF11-206ENST00000474828 STRCQ7RTU9 1775 aa25.24■■□□□ 1.63
SCAF11-206ENST00000474828 MPHOSPH9Q99550 1183 aa25.24■■□□□ 1.63
SCAF11-206ENST00000474828 SLC4A1APQ9BWU0 796 aaKnown RBP25.24■■□□□ 1.63
SCAF11-206ENST00000474828 TRPM2O94759 1503 aa25.23■■□□□ 1.63
SCAF11-206ENST00000474828 PKD2Q13563 968 aa25.23■■□□□ 1.63
SCAF11-206ENST00000474828 THEMISQ8N1K5 641 aaPredicted RBP25.23■■□□□ 1.63
SCAF11-206ENST00000474828 SPHKAPQ2M3C7 1700 aa25.23■■□□□ 1.63
SCAF11-206ENST00000474828 ARHGAP23Q9P227 1491 aa25.22■■□□□ 1.63
SCAF11-206ENST00000474828 SLIT1O75093 1534 aa25.21■■□□□ 1.63
SCAF11-206ENST00000474828 ADGRB3O60242 1522 aa25.2■■□□□ 1.62
SCAF11-206ENST00000474828 TMEM131LA2VDJ0 1609 aa25.17■■□□□ 1.62
SCAF11-206ENST00000474828 MED14O60244 1454 aa25.15■■□□□ 1.62
SCAF11-206ENST00000474828 TMEM2Q9UHN6 1383 aa25.14■■□□□ 1.61
SCAF11-206ENST00000474828 NEURL4Q96JN8 1562 aa25.12■■□□□ 1.61
SCAF11-206ENST00000474828 CLTCL1P53675 1640 aa25.12■■□□□ 1.61
SCAF11-206ENST00000474828 DMRT2Q9Y5R5 561 aa25.11■■□□□ 1.61
SCAF11-206ENST00000474828 ANKLE2Q86XL3 938 aa25.09■■□□□ 1.61
SCAF11-206ENST00000474828 ZFYVE9O95405 1425 aa25.09■■□□□ 1.61
SCAF11-206ENST00000474828 POLR1AO95602 1720 aaPredicted RBP25.09■■□□□ 1.61
SCAF11-206ENST00000474828 NCKAP5LQ9HCH0 1330 aa25.08■■□□□ 1.6
SCAF11-206ENST00000474828 FOXD1Q16676 465 aa25.06■■□□□ 1.6
SCAF11-206ENST00000474828 SCAF11Q99590 1463 aaKnown RBP25.06■■□□□ 1.6
SCAF11-206ENST00000474828 ANKRD30BQ9BXX2 1392 aa25.05■■□□□ 1.6
SCAF11-206ENST00000474828 LTKP29376 864 aa25.05■■□□□ 1.6
SCAF11-206ENST00000474828 MYO5BQ9ULV0 1848 aa25.03■■□□□ 1.6
SCAF11-206ENST00000474828 STAG3Q9UJ98 1225 aa25.03■■□□□ 1.6
SCAF11-206ENST00000474828 CCDC144AA2RUR9 1427 aa25.01■■□□□ 1.59
SCAF11-206ENST00000474828 NPHP4O75161 1426 aaPredicted RBP25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms