RNA–Protein interactions for RNA: ENST00000474665.1

LIMD1-204, Transcript of LIM domains containing 1, humanhuman

TSL 3

Gene LIMD1, Length 513 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-204ENST00000474665 SHANK2Q9UPX8 1470 aa10.8□□□□□ -0.68
LIMD1-204ENST00000474665 KIDINS220Q9ULH0 1771 aa10.8□□□□□ -0.68
LIMD1-204ENST00000474665 ARHGEF5Q12774 1597 aa10.79□□□□□ -0.68
LIMD1-204ENST00000474665 NPATQ14207 1427 aa10.79□□□□□ -0.68
LIMD1-204ENST00000474665 ZMYM3Q14202 1370 aa10.78□□□□□ -0.68
LIMD1-204ENST00000474665 ABCC5O15440 1437 aa10.78□□□□□ -0.68
LIMD1-204ENST00000474665 RRBP1Q9P2E9 1410 aaKnown RBP10.78□□□□□ -0.68
LIMD1-204ENST00000474665 MLH3Q9UHC1 1453 aa10.78□□□□□ -0.68
LIMD1-204ENST00000474665 INO80Q9ULG1 1556 aaPredicted RBP10.77□□□□□ -0.68
LIMD1-204ENST00000474665 DIP2CQ9Y2E4 1556 aa10.77□□□□□ -0.68
LIMD1-204ENST00000474665 CCDC141Q6ZP82 1450 aa10.77□□□□□ -0.69
LIMD1-204ENST00000474665 DNMT1P26358 1616 aaKnown RBP10.76□□□□□ -0.69
LIMD1-204ENST00000474665 CNTLNQ9NXG0 1405 aa10.76□□□□□ -0.69
LIMD1-204ENST00000474665 AGLP35573 1532 aa10.76□□□□□ -0.69
LIMD1-204ENST00000474665 ABCA6Q8N139 1617 aa10.76□□□□□ -0.69
LIMD1-204ENST00000474665 FAM50AQ14320 339 aaKnown RBP10.75□□□□□ -0.69
LIMD1-204ENST00000474665 CROCC2H7BZ55 1655 aa10.75□□□□□ -0.69
LIMD1-204ENST00000474665 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.75□□□□□ -0.69
LIMD1-204ENST00000474665 DAPK1P53355 1430 aa10.75□□□□□ -0.69
LIMD1-204ENST00000474665 ATP7AQ04656 1500 aa10.74□□□□□ -0.69
LIMD1-204ENST00000474665 RSPH4AQ5TD94 716 aa10.74□□□□□ -0.69
LIMD1-204ENST00000474665 SPAG9O60271 1321 aaKnown RBP10.74□□□□□ -0.69
LIMD1-204ENST00000474665 REREQ9P2R6 1566 aa10.73□□□□□ -0.69
LIMD1-204ENST00000474665 MAST1Q9Y2H9 1570 aa10.73□□□□□ -0.69
LIMD1-204ENST00000474665 CEP170BQ9Y4F5 1589 aaPredicted RBP10.73□□□□□ -0.69
LIMD1-204ENST00000474665 RTEL1-TNFRSF6BF6WH68 1400 aa10.73□□□□□ -0.69
LIMD1-204ENST00000474665 MYO3AQ8NEV4 1616 aa10.73□□□□□ -0.69
LIMD1-204ENST00000474665 ZNF142P52746 1687 aaPredicted RBP10.72□□□□□ -0.69
LIMD1-204ENST00000474665 ADGBQ8N7X0 1667 aa10.72□□□□□ -0.69
LIMD1-204ENST00000474665 TRIM52Q96A61 297 aa10.71□□□□□ -0.69
LIMD1-204ENST00000474665 VWDEQ8N2E2 1590 aa10.7□□□□□ -0.7
LIMD1-204ENST00000474665 PLXNC1O60486 1568 aa10.69□□□□□ -0.7
LIMD1-204ENST00000474665 TSPY4P0CV99 314 aa10.69□□□□□ -0.7
LIMD1-204ENST00000474665 TSPY10P0CW01 314 aa10.69□□□□□ -0.7
LIMD1-204ENST00000474665 CHIC2Q9UKJ5 165 aa10.69□□□□□ -0.7
LIMD1-204ENST00000474665 NEURL4Q96JN8 1562 aa10.69□□□□□ -0.7
LIMD1-204ENST00000474665 ADGRL2O95490 1459 aa10.68□□□□□ -0.7
LIMD1-204ENST00000474665 SRCAPQ6ZRS2 3230 aa10.68□□□□□ -0.7
LIMD1-204ENST00000474665 MROH2AA6NES4 1674 aa10.68□□□□□ -0.7
LIMD1-204ENST00000474665 LRRC7Q96NW7 1537 aa10.68□□□□□ -0.7
LIMD1-204ENST00000474665 A2MP01023 1474 aa10.68□□□□□ -0.7
LIMD1-204ENST00000474665 ITGAEP38570 1179 aa10.67□□□□□ -0.7
LIMD1-204ENST00000474665 DHX29Q7Z478 1369 aaKnown RBP10.66□□□□□ -0.7
LIMD1-204ENST00000474665 ANKLE2Q86XL3 938 aa10.66□□□□□ -0.7
LIMD1-204ENST00000474665 RRP7BPQ9NSQ0 103 aa10.66□□□□□ -0.7
LIMD1-204ENST00000474665 A2ML1A8K2U0 1454 aa10.66□□□□□ -0.7
LIMD1-204ENST00000474665 KIF15Q9NS87 1388 aa10.65□□□□□ -0.7
LIMD1-204ENST00000474665 ROCK1Q13464 1354 aa10.65□□□□□ -0.71
LIMD1-204ENST00000474665 CLTCQ00610 1675 aaKnown RBP10.64□□□□□ -0.71
LIMD1-204ENST00000474665 POLR1AO95602 1720 aaPredicted RBP10.64□□□□□ -0.71
LIMD1-204ENST00000474665 ANKRD30AQ9BXX3 1397 aa10.64□□□□□ -0.71
LIMD1-204ENST00000474665 DUOX2Q9NRD8 1548 aa10.63□□□□□ -0.71
LIMD1-204ENST00000474665 RNF17Q9BXT8 1623 aaKnown RBP10.63□□□□□ -0.71
LIMD1-204ENST00000474665 STRCP1A6NGW2 1772 aa10.63□□□□□ -0.71
LIMD1-204ENST00000474665 GGT6Q6P531 493 aa10.63□□□□□ -0.71
LIMD1-204ENST00000474665 NPHP4O75161 1426 aaPredicted RBP10.63□□□□□ -0.71
LIMD1-204ENST00000474665 MROH1Q8NDA8 1641 aa10.62□□□□□ -0.71
LIMD1-204ENST00000474665 NAIPQ13075 1403 aa10.61□□□□□ -0.71
LIMD1-204ENST00000474665 FBXO31Q5XUX0 539 aaPredicted RBP10.61□□□□□ -0.71
LIMD1-204ENST00000474665 FAM135BQ49AJ0 1406 aa10.6□□□□□ -0.71
LIMD1-204ENST00000474665 ANKRD50Q9ULJ7 1429 aa10.6□□□□□ -0.71
LIMD1-204ENST00000474665 EIF2AK4Q9P2K8 1649 aaKnown RBP10.6□□□□□ -0.71
LIMD1-204ENST00000474665 KIF3BO15066 747 aa10.6□□□□□ -0.71
LIMD1-204ENST00000474665 ERBINQ96RT1 1412 aa10.59□□□□□ -0.71
LIMD1-204ENST00000474665 HFM1A2PYH4 1435 aa10.58□□□□□ -0.72
LIMD1-204ENST00000474665 DEPDC5O75140 1603 aa10.58□□□□□ -0.72
LIMD1-204ENST00000474665 GCC2Q8IWJ2 1684 aa10.58□□□□□ -0.72
LIMD1-204ENST00000474665 RXRBP28702 533 aa10.58□□□□□ -0.72
LIMD1-204ENST00000474665 THEMISQ8N1K5 641 aaPredicted RBP10.58□□□□□ -0.72
LIMD1-204ENST00000474665 MED14O60244 1454 aa10.57□□□□□ -0.72
LIMD1-204ENST00000474665 ZNF772Q68DY9 489 aaPredicted RBP10.57□□□□□ -0.72
LIMD1-204ENST00000474665 TNRQ92752 1358 aa10.56□□□□□ -0.72
LIMD1-204ENST00000474665 PRDM15P57071 1507 aaPredicted RBP10.56□□□□□ -0.72
LIMD1-204ENST00000474665 ZRANB1Q9UGI0 708 aa10.55□□□□□ -0.72
LIMD1-204ENST00000474665 SYNMO15061 1565 aa10.55□□□□□ -0.72
LIMD1-204ENST00000474665 ABCC3O15438 1527 aa10.54□□□□□ -0.72
LIMD1-204ENST00000474665 KDM5DQ9BY66 1539 aa10.54□□□□□ -0.72
LIMD1-204ENST00000474665 UNC13BO14795 1591 aa10.54□□□□□ -0.72
LIMD1-204ENST00000474665 MEX3CQ5U5Q3 659 aaKnown RBP10.54□□□□□ -0.72
LIMD1-204ENST00000474665 SETBP1Q9Y6X0 1596 aa10.54□□□□□ -0.72
LIMD1-204ENST00000474665 CFAP65Q6ZU64 1925 aaKnown RBP10.54□□□□□ -0.72
LIMD1-204ENST00000474665 CEP152O94986 1710 aa10.53□□□□□ -0.72
LIMD1-204ENST00000474665 RBM33Q96EV2 1170 aaKnown RBP10.53□□□□□ -0.72
LIMD1-204ENST00000474665 IQGAP1P46940 1657 aa10.53□□□□□ -0.72
LIMD1-204ENST00000474665 JCADQ9P266 1359 aa10.52□□□□□ -0.72
LIMD1-204ENST00000474665 TRIM26Q12899 539 aaPredicted RBP10.52□□□□□ -0.73
LIMD1-204ENST00000474665 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.52□□□□□ -0.733e-6■■■■□ 20.1
LIMD1-204ENST00000474665 ROBO1Q9Y6N7 1651 aa10.52□□□□□ -0.73
LIMD1-204ENST00000474665 XIRP1Q702N8 1843 aaKnown RBP10.51□□□□□ -0.73
LIMD1-204ENST00000474665 LRP6O75581 1613 aa10.51□□□□□ -0.73
LIMD1-204ENST00000474665 SETD5Q9C0A6 1442 aa10.51□□□□□ -0.73
LIMD1-204ENST00000474665 FAM135AQ9P2D6 1515 aa10.51□□□□□ -0.73
LIMD1-204ENST00000474665 WASHC2CQ9Y4E1 1318 aa10.51□□□□□ -0.73
LIMD1-204ENST00000474665 LMTK2Q8IWU2 1503 aa10.5□□□□□ -0.73
LIMD1-204ENST00000474665 NUTM2BA6NNL0 878 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-204ENST00000474665 NUTM2EB1AL46 878 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-204ENST00000474665 NUTM2DQ5VT03 806 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-204ENST00000474665 NUTM2AQ8IVF1 878 aaPredicted RBP10.5□□□□□ -0.73
LIMD1-204ENST00000474665 UGGT1Q9NYU2 1555 aa10.5□□□□□ -0.73
LIMD1-204ENST00000474665 IQGAP3Q86VI3 1631 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms