RNA–Protein interactions for RNA: ENST00000470241.2

SMC1A-206, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 838 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-206ENST00000470241 ADAMTSL3P82987 1691 aa15.85■□□□□ 0.13
SMC1A-206ENST00000470241 GCC2Q8IWJ2 1684 aa15.85■□□□□ 0.13
SMC1A-206ENST00000470241 SETD5Q9C0A6 1442 aa15.84■□□□□ 0.13
SMC1A-206ENST00000470241 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.83■□□□□ 0.128e-7■■■■□ 19.3
SMC1A-206ENST00000470241 PRDM15P57071 1507 aaPredicted RBP15.82■□□□□ 0.12
SMC1A-206ENST00000470241 DEPDC5O75140 1603 aa15.82■□□□□ 0.12
SMC1A-206ENST00000470241 MADDQ8WXG6 1647 aa15.82■□□□□ 0.12
SMC1A-206ENST00000470241 KDM5DQ9BY66 1539 aa15.8■□□□□ 0.12
SMC1A-206ENST00000470241 RAB3GAP2Q9H2M9 1393 aa15.8■□□□□ 0.12
SMC1A-206ENST00000470241 WASHC2CQ9Y4E1 1318 aa15.8■□□□□ 0.12
SMC1A-206ENST00000470241 UNC13BO14795 1591 aa15.79■□□□□ 0.12
SMC1A-206ENST00000470241 VWDEQ8N2E2 1590 aa15.79■□□□□ 0.12
SMC1A-206ENST00000470241 CNTLNQ9NXG0 1405 aa15.79■□□□□ 0.12
SMC1A-206ENST00000470241 ESF1Q9H501 851 aaKnown RBP15.79■□□□□ 0.12
SMC1A-206ENST00000470241 ABCC3O15438 1527 aa15.78■□□□□ 0.12
SMC1A-206ENST00000470241 FAM135AQ9P2D6 1515 aa15.78■□□□□ 0.12
SMC1A-206ENST00000470241 NUP155O75694 1391 aa15.78■□□□□ 0.12
SMC1A-206ENST00000470241 KANK1Q14678 1352 aa15.78■□□□□ 0.12
SMC1A-206ENST00000470241 ZMYM3Q14202 1370 aa15.76■□□□□ 0.11
SMC1A-206ENST00000470241 LMTK2Q8IWU2 1503 aa15.76■□□□□ 0.11
SMC1A-206ENST00000470241 FER1L4A9Z1Z3 1794 aa15.76■□□□□ 0.11
SMC1A-206ENST00000470241 PTPRMP28827 1452 aa15.76■□□□□ 0.11
SMC1A-206ENST00000470241 HRCP23327 699 aa15.75■□□□□ 0.11
SMC1A-206ENST00000470241 PCGF6Q9BYE7 350 aa15.75■□□□□ 0.11
SMC1A-206ENST00000470241 RIMS1Q86UR5 1692 aaKnown RBP15.75■□□□□ 0.11
SMC1A-206ENST00000470241 CLTCQ00610 1675 aaKnown RBP15.74■□□□□ 0.11
SMC1A-206ENST00000470241 CEBPAP49715 358 aaPredicted RBP15.74■□□□□ 0.11
SMC1A-206ENST00000470241 TRIM52Q96A61 297 aa15.74■□□□□ 0.11
SMC1A-206ENST00000470241 ZC3H13Q5T200 1668 aaKnown RBP15.73■□□□□ 0.11
SMC1A-206ENST00000470241 IQGAP3Q86VI3 1631 aa15.72■□□□□ 0.11
SMC1A-206ENST00000470241 PZPP20742 1482 aa15.72■□□□□ 0.11
SMC1A-206ENST00000470241 ACIN1Q9UKV3 1341 aaKnown RBP15.71■□□□□ 0.11
SMC1A-206ENST00000470241 ARHGAP31Q2M1Z3 1444 aa15.71■□□□□ 0.11
SMC1A-206ENST00000470241 MROH2AA6NES4 1674 aa15.71■□□□□ 0.11
SMC1A-206ENST00000470241 PLPPR3Q6T4P5 718 aa15.71■□□□□ 0.11
SMC1A-206ENST00000470241 CEP152O94986 1710 aa15.71■□□□□ 0.1
SMC1A-206ENST00000470241 NPATQ14207 1427 aa15.69■□□□□ 0.1
SMC1A-206ENST00000470241 EFCAB6Q5THR3 1501 aa15.69■□□□□ 0.1
SMC1A-206ENST00000470241 CAMSAP1Q5T5Y3 1602 aa15.69■□□□□ 0.1
SMC1A-206ENST00000470241 FBXO31Q5XUX0 539 aaPredicted RBP15.69■□□□□ 0.1
SMC1A-206ENST00000470241 C3P01024 1663 aa15.68■□□□□ 0.1
SMC1A-206ENST00000470241 SLC4A1APQ9BWU0 796 aaKnown RBP15.68■□□□□ 0.1
SMC1A-206ENST00000470241 TET3O43151 1660 aa15.67■□□□□ 0.1
SMC1A-206ENST00000470241 MPHOSPH9Q99550 1183 aa15.67■□□□□ 0.1
SMC1A-206ENST00000470241 RPRD2Q5VT52 1461 aaKnown RBP15.65■□□□□ 0.1
SMC1A-206ENST00000470241 PKD2Q13563 968 aa15.65■□□□□ 0.1
SMC1A-206ENST00000470241 ERVK-7P63135 1459 aa15.65■□□□□ 0.1
SMC1A-206ENST00000470241 SPATA31D1Q6ZQQ2 1576 aa15.63■□□□□ 0.09
SMC1A-206ENST00000470241 NOS1P29475 1434 aa15.63■□□□□ 0.09
SMC1A-206ENST00000470241 E9PCH4 1651 aa15.63■□□□□ 0.09
SMC1A-206ENST00000470241 TNRQ92752 1358 aa15.62■□□□□ 0.09
SMC1A-206ENST00000470241 FOXD1Q16676 465 aa15.61■□□□□ 0.09
SMC1A-206ENST00000470241 PTPRTO14522 1441 aa15.6■□□□□ 0.09
SMC1A-206ENST00000470241 PLA2R1Q13018 1463 aa15.59■□□□□ 0.09
SMC1A-206ENST00000470241 PREX1Q8TCU6 1659 aa15.59■□□□□ 0.09
SMC1A-206ENST00000470241 SYNMO15061 1565 aa15.58■□□□□ 0.08
SMC1A-206ENST00000470241 AEBP2Q6ZN18 517 aaPredicted RBP15.57■□□□□ 0.08
SMC1A-206ENST00000470241 DHX57Q6P158 1386 aaKnown RBP15.56■□□□□ 0.08
SMC1A-206ENST00000470241 UHRF1BP1Q6BDS2 1440 aa15.55■□□□□ 0.08
SMC1A-206ENST00000470241 IDI1Q13907 227 aa15.55■□□□□ 0.08
SMC1A-206ENST00000470241 SLC52A1Q9NWF4 448 aa15.55■□□□□ 0.08
SMC1A-206ENST00000470241 UGGT1Q9NYU2 1555 aa15.54■□□□□ 0.08
SMC1A-206ENST00000470241 TRPM2O94759 1503 aa15.54■□□□□ 0.08
SMC1A-206ENST00000470241 NLRP1Q9C000 1473 aa15.54■□□□□ 0.08
SMC1A-206ENST00000470241 MYO3AQ8NEV4 1616 aa15.54■□□□□ 0.08
SMC1A-206ENST00000470241 ANKRD30BQ9BXX2 1392 aa15.53■□□□□ 0.08
SMC1A-206ENST00000470241 A2ML1A8K2U0 1454 aa15.52■□□□□ 0.08
SMC1A-206ENST00000470241 LMTK3Q96Q04 1460 aa15.52■□□□□ 0.08
SMC1A-206ENST00000470241 SPHKAPQ2M3C7 1700 aa15.51■□□□□ 0.07
SMC1A-206ENST00000470241 CFAP65Q6ZU64 1925 aaKnown RBP15.51■□□□□ 0.07
SMC1A-206ENST00000470241 CEP170BQ9Y4F5 1589 aaPredicted RBP15.51■□□□□ 0.07
SMC1A-206ENST00000470241 PIK3C2BO00750 1634 aa15.5■□□□□ 0.07
SMC1A-206ENST00000470241 SETD1BQ9UPS6 1966 aaKnown RBP15.5■□□□□ 0.07
SMC1A-206ENST00000470241 CLTCL1P53675 1640 aa15.49■□□□□ 0.07
SMC1A-206ENST00000470241 CCDC144AA2RUR9 1427 aa15.48■□□□□ 0.07
SMC1A-206ENST00000470241 ZNF142P52746 1687 aaPredicted RBP15.48■□□□□ 0.07
SMC1A-206ENST00000470241 HSPA2P54652 639 aa15.47■□□□□ 0.07
SMC1A-206ENST00000470241 ADGRB3O60242 1522 aa15.47■□□□□ 0.07
SMC1A-206ENST00000470241 CHGAP10645 457 aaKnown RBP15.46■□□□□ 0.07
SMC1A-206ENST00000470241 STAG3Q9UJ98 1225 aa15.46■□□□□ 0.07
SMC1A-206ENST00000470241 THEMISQ8N1K5 641 aaPredicted RBP15.45■□□□□ 0.06
SMC1A-206ENST00000470241 TMEM131LA2VDJ0 1609 aa15.44■□□□□ 0.06
SMC1A-206ENST00000470241 UBR1Q8IWV7 1749 aa15.43■□□□□ 0.06
SMC1A-206ENST00000470241 SPATA31E1Q6ZUB1 1445 aa15.43■□□□□ 0.06
SMC1A-206ENST00000470241 TMEM2Q9UHN6 1383 aa15.42■□□□□ 0.06
SMC1A-206ENST00000470241 KDM5AP29375 1690 aaKnown RBP15.41■□□□□ 0.06
SMC1A-206ENST00000470241 ARHGAP23Q9P227 1491 aa15.41■□□□□ 0.06
SMC1A-206ENST00000470241 SIN3AQ96ST3 1273 aa15.41■□□□□ 0.06
SMC1A-206ENST00000470241 SLIT1O75093 1534 aa15.4■□□□□ 0.06
SMC1A-206ENST00000470241 ZFYVE9O95405 1425 aa15.39■□□□□ 0.05
SMC1A-206ENST00000470241 NEURL4Q96JN8 1562 aa15.38■□□□□ 0.05
SMC1A-206ENST00000470241 RIMS2Q9UQ26 1411 aa15.38■□□□□ 0.05
SMC1A-206ENST00000470241 LTKP29376 864 aa15.38■□□□□ 0.05
SMC1A-206ENST00000470241 RGL3Q3MIN7 710 aa15.38■□□□□ 0.05
SMC1A-206ENST00000470241 ZNF326Q5BKZ1 582 aaKnown RBP15.38■□□□□ 0.05
SMC1A-206ENST00000470241 CCER1Q8TC90 406 aaPredicted RBP15.38■□□□□ 0.05
SMC1A-206ENST00000470241 NCKAP5LQ9HCH0 1330 aa15.38■□□□□ 0.05
SMC1A-206ENST00000470241 TXNDC2Q86VQ3 553 aa15.37■□□□□ 0.05
SMC1A-206ENST00000470241 ANKLE2Q86XL3 938 aa15.37■□□□□ 0.05
SMC1A-206ENST00000470241 NEUROD1Q13562 356 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms