RNA–Protein interactions for RNA: ENST00000470167.1

COL3A1-205, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2

Gene COL3A1, Length 628 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-205ENST00000470167 IPO4Q8TEX9 1081 aaKnown RBP7.18□□□□□ -1.26
COL3A1-205ENST00000470167 CLSTN1O94985 981 aa7.17□□□□□ -1.26
COL3A1-205ENST00000470167 SEC24BO95487 1268 aa7.17□□□□□ -1.26
COL3A1-205ENST00000470167 NEUROD2Q15784 382 aa7.17□□□□□ -1.26
COL3A1-205ENST00000470167 L3MBTL3Q96JM7 780 aaPredicted RBP7.17□□□□□ -1.26
COL3A1-205ENST00000470167 NAP1L2Q9ULW6 460 aaPredicted RBP7.17□□□□□ -1.26
COL3A1-205ENST00000470167 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.17□□□□□ -1.26
COL3A1-205ENST00000470167 UPF1Q92900 1129 aaKnown RBP eCLIP7.16□□□□□ -1.26
COL3A1-205ENST00000470167 POLR3GLQ9BT43 218 aa7.16□□□□□ -1.26
COL3A1-205ENST00000470167 BARGINQ6ZT62 677 aa7.15□□□□□ -1.26
COL3A1-205ENST00000470167 POTEFA5A3E0 1075 aa7.14□□□□□ -1.27
COL3A1-205ENST00000470167 NCLP19338 710 aaKnown RBP7.14□□□□□ -1.27
COL3A1-205ENST00000470167 MAP3K9P80192 1104 aa7.14□□□□□ -1.27
COL3A1-205ENST00000470167 SLC39A7Q92504 469 aa7.13□□□□□ -1.27
COL3A1-205ENST00000470167 GRXCR2A6NFK2 248 aa7.12□□□□□ -1.27
COL3A1-205ENST00000470167 GPR37O15354 613 aa7.11□□□□□ -1.27
COL3A1-205ENST00000470167 OXER1Q8TDS5 423 aa7.11□□□□□ -1.27
COL3A1-205ENST00000470167 METRNQ9UJH8 293 aa7.11□□□□□ -1.27
COL3A1-205ENST00000470167 KRI1Q8N9T8 703 aaKnown RBP7.1□□□□□ -1.27
COL3A1-205ENST00000470167 C7P10643 843 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 IRX6P78412 446 aaPredicted RBP7.09□□□□□ -1.27
COL3A1-205ENST00000470167 GRIPAP1Q4V328 841 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 C3orf67Q6ZVT6 689 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 AK7Q96M32 723 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 BRPF3Q9ULD4 1205 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 DCAF1Q9Y4B6 1507 aa7.09□□□□□ -1.27
COL3A1-205ENST00000470167 DDX12PQ92771 950 aa7.08□□□□□ -1.28
COL3A1-205ENST00000470167 GPBP1L1Q9HC44 474 aaPredicted RBP7.08□□□□□ -1.28
COL3A1-205ENST00000470167 NUTM2FA1L443 756 aa7.07□□□□□ -1.28
COL3A1-205ENST00000470167 OSBPP22059 807 aa7.07□□□□□ -1.28
COL3A1-205ENST00000470167 CC2D2BQ6DHV5 1058 aa7.07□□□□□ -1.28
COL3A1-205ENST00000470167 FTSJ3Q8IY81 847 aaKnown RBP7.07□□□□□ -1.28
COL3A1-205ENST00000470167 ZNF592Q92610 1267 aa7.07□□□□□ -1.28
COL3A1-205ENST00000470167 EVI5O60447 810 aa7.06□□□□□ -1.28
COL3A1-205ENST00000470167 PTGER2P43116 358 aa7.05□□□□□ -1.28
COL3A1-205ENST00000470167 PRIM1P49642 420 aaKnown RBP7.05□□□□□ -1.28
COL3A1-205ENST00000470167 CNPY4Q8N129 248 aa7.05□□□□□ -1.28
COL3A1-205ENST00000470167 SECISBP2LQ93073 1101 aaKnown RBP7.05□□□□□ -1.28
COL3A1-205ENST00000470167 PSMD1Q99460 953 aa7.05□□□□□ -1.28
COL3A1-205ENST00000470167 ARID4BQ4LE39 1312 aaPredicted RBP7.04□□□□□ -1.28
COL3A1-205ENST00000470167 TRIM66O15016 1216 aa7.04□□□□□ -1.28
COL3A1-205ENST00000470167 TBC1D12O60347 775 aa7.04□□□□□ -1.28
COL3A1-205ENST00000470167 SETQ01105 290 aaPredicted RBP7.04□□□□□ -1.28
COL3A1-205ENST00000470167 MCCP23508 829 aa7.03□□□□□ -1.28
COL3A1-205ENST00000470167 PDE4DQ08499 809 aa7.03□□□□□ -1.28
COL3A1-205ENST00000470167 PTCD2Q8WV60 388 aaKnown RBP7.03□□□□□ -1.28
COL3A1-205ENST00000470167 PLCD4Q9BRC7 762 aa7.03□□□□□ -1.28
COL3A1-205ENST00000470167 ZNF316A6NFI3 1004 aaPredicted RBP7.02□□□□□ -1.29
COL3A1-205ENST00000470167 GTF2E1P29083 439 aaPredicted RBP7.02□□□□□ -1.29
COL3A1-205ENST00000470167 CCDC102AQ96A19 550 aa7.02□□□□□ -1.29
COL3A1-205ENST00000470167 FECHP22830 423 aa7.01□□□□□ -1.29
COL3A1-205ENST00000470167 MAP2K5Q13163 448 aa7.01□□□□□ -1.29
COL3A1-205ENST00000470167 TMED8Q6PL24 325 aaPredicted RBP7.01□□□□□ -1.29
COL3A1-205ENST00000470167 KDM4CQ9H3R0 1056 aa7.01□□□□□ -1.29
COL3A1-205ENST00000470167 GNPATO15228 680 aa7□□□□□ -1.29
COL3A1-205ENST00000470167 FCHSD2O94868 740 aa7□□□□□ -1.29
COL3A1-205ENST00000470167 NEFMP07197 916 aa7□□□□□ -1.29
COL3A1-205ENST00000470167 CHMP4BQ9H444 224 aaKnown RBP7□□□□□ -1.29
COL3A1-205ENST00000470167 MINK1Q8N4C8 1332 aaPredicted RBP7□□□□□ -1.29
COL3A1-205ENST00000470167 C11orf95C9JLR9 678 aaPredicted RBP6.99□□□□□ -1.29
COL3A1-205ENST00000470167 SLC34A2O95436 690 aa6.99□□□□□ -1.29
COL3A1-205ENST00000470167 PTMAP06454 111 aaKnown RBP6.99□□□□□ -1.29
COL3A1-205ENST00000470167 HIC1Q14526 733 aa6.99□□□□□ -1.29
COL3A1-205ENST00000470167 CERS3Q8IU89 383 aa6.99□□□□□ -1.29
COL3A1-205ENST00000470167 YTHDC1Q96MU7 727 aaKnown RBP6.99□□□□□ -1.29
COL3A1-205ENST00000470167 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.99□□□□□ -1.29
COL3A1-205ENST00000470167 ZBTB7CA1YPR0 619 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 POTEB2H3BUK9 544 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 IRF6O14896 467 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 PTGDRQ13258 359 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 IL27Q8NEV9 243 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 CDHR5Q9HBB8 845 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 FANCIQ9NVI1 1328 aa6.98□□□□□ -1.29
COL3A1-205ENST00000470167 PTMSP20962 102 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 OTUD5Q96G74 571 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 PCGF6Q9BYE7 350 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 PRDM10Q9NQV6 1147 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 PCDHGA4Q9Y5G9 962 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 CCDC180Q9P1Z9 1646 aa6.97□□□□□ -1.29
COL3A1-205ENST00000470167 RRP9O43818 475 aaKnown RBP6.96□□□□□ -1.3
COL3A1-205ENST00000470167 CANXP27824 592 aaKnown RBP6.96□□□□□ -1.3
COL3A1-205ENST00000470167 EN1Q05925 392 aaPredicted RBP6.96□□□□□ -1.3
COL3A1-205ENST00000470167 RBM33Q96EV2 1170 aaKnown RBP6.96□□□□□ -1.3
COL3A1-205ENST00000470167 STAC3Q96MF2 364 aa6.96□□□□□ -1.3
COL3A1-205ENST00000470167 PRDM16Q9HAZ2 1276 aa6.96□□□□□ -1.3
COL3A1-205ENST00000470167 KCNG1Q9UIX4 513 aa6.96□□□□□ -1.3
COL3A1-205ENST00000470167 MAFGO15525 162 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 MAP3K7O43318 606 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 PHF14O94880 888 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 AMHR2Q16671 573 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 WWC1Q8IX03 1113 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 PARP9Q8IXQ6 854 aa6.95□□□□□ -1.3
COL3A1-205ENST00000470167 EPAS1Q99814 870 aa6.94□□□□□ -1.3
COL3A1-205ENST00000470167 FAM117AQ9C073 453 aa6.94□□□□□ -1.3
COL3A1-205ENST00000470167 PCDHGA10Q9Y5H3 936 aa6.94□□□□□ -1.3
COL3A1-205ENST00000470167 CALD1Q05682 793 aaKnown RBP6.93□□□□□ -1.3
COL3A1-205ENST00000470167 CNGB1Q14028 1251 aaPredicted RBP6.93□□□□□ -1.3
COL3A1-205ENST00000470167 TSR1Q2NL82 804 aaKnown RBP6.93□□□□□ -1.3
COL3A1-205ENST00000470167 PRDM4Q9UKN5 801 aa6.93□□□□□ -1.3
COL3A1-205ENST00000470167 MMP14P50281 582 aa6.92□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms