RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 MROH1Q8NDA8 1641 aa22.31■■□□□ 1.16
COL9A3-209ENST00000469852 RNF17Q9BXT8 1623 aaKnown RBP22.31■■□□□ 1.16
COL9A3-209ENST00000469852 PTPRMP28827 1452 aa22.29■■□□□ 1.16
COL9A3-209ENST00000469852 DEPDC5O75140 1603 aa22.28■■□□□ 1.16
COL9A3-209ENST00000469852 GGT6Q6P531 493 aa22.26■■□□□ 1.15
COL9A3-209ENST00000469852 MADDQ8WXG6 1647 aa22.25■■□□□ 1.15
COL9A3-209ENST00000469852 PRDM15P57071 1507 aaPredicted RBP22.24■■□□□ 1.15
COL9A3-209ENST00000469852 FER1L4A9Z1Z3 1794 aa22.24■■□□□ 1.15
COL9A3-209ENST00000469852 UNC13BO14795 1591 aa22.24■■□□□ 1.15
COL9A3-209ENST00000469852 SETD5Q9C0A6 1442 aa22.23■■□□□ 1.15
COL9A3-209ENST00000469852 CLTCQ00610 1675 aaKnown RBP22.2■■□□□ 1.14
COL9A3-209ENST00000469852 RIMS1Q86UR5 1692 aaKnown RBP22.2■■□□□ 1.14
COL9A3-209ENST00000469852 CEP152O94986 1710 aa22.2■■□□□ 1.14
COL9A3-209ENST00000469852 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.19■■□□□ 1.142e-6■□□□□ 8.7
COL9A3-209ENST00000469852 VWDEQ8N2E2 1590 aa22.19■■□□□ 1.14
COL9A3-209ENST00000469852 RAB3GAP2Q9H2M9 1393 aa22.18■■□□□ 1.14
COL9A3-209ENST00000469852 ABCC3O15438 1527 aa22.16■■□□□ 1.14
COL9A3-209ENST00000469852 KDM5DQ9BY66 1539 aa22.16■■□□□ 1.14
COL9A3-209ENST00000469852 ZC3H13Q5T200 1668 aaKnown RBP22.14■■□□□ 1.14
COL9A3-209ENST00000469852 PCGF6Q9BYE7 350 aa22.14■■□□□ 1.13
COL9A3-209ENST00000469852 IQGAP3Q86VI3 1631 aa22.13■■□□□ 1.13
COL9A3-209ENST00000469852 FAM135AQ9P2D6 1515 aa22.12■■□□□ 1.13
COL9A3-209ENST00000469852 CAMSAP1Q5T5Y3 1602 aa22.12■■□□□ 1.13
COL9A3-209ENST00000469852 NUP155O75694 1391 aa22.12■■□□□ 1.13
COL9A3-209ENST00000469852 WASHC2CQ9Y4E1 1318 aa22.11■■□□□ 1.13
COL9A3-209ENST00000469852 MROH2AA6NES4 1674 aa22.11■■□□□ 1.13
COL9A3-209ENST00000469852 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
COL9A3-209ENST00000469852 LMTK2Q8IWU2 1503 aa22.11■■□□□ 1.13
COL9A3-209ENST00000469852 C3P01024 1663 aa22.11■■□□□ 1.13
COL9A3-209ENST00000469852 LMTK3Q96Q04 1460 aa22.1■■□□□ 1.13
COL9A3-209ENST00000469852 KANK1Q14678 1352 aa22.1■■□□□ 1.13
COL9A3-209ENST00000469852 CNTLNQ9NXG0 1405 aa22.09■■□□□ 1.13
COL9A3-209ENST00000469852 PZPP20742 1482 aa22.09■■□□□ 1.13
COL9A3-209ENST00000469852 TRIM52Q96A61 297 aa22.07■■□□□ 1.12
COL9A3-209ENST00000469852 ESF1Q9H501 851 aaKnown RBP22.07■■□□□ 1.12
COL9A3-209ENST00000469852 TET3O43151 1660 aa22.07■■□□□ 1.12
COL9A3-209ENST00000469852 CEBPAP49715 358 aaPredicted RBP22.06■■□□□ 1.12
COL9A3-209ENST00000469852 ZMYM3Q14202 1370 aa22.06■■□□□ 1.12
COL9A3-209ENST00000469852 EFCAB6Q5THR3 1501 aa22.06■■□□□ 1.12
COL9A3-209ENST00000469852 PLPPR3Q6T4P5 718 aa22.04■■□□□ 1.12
COL9A3-209ENST00000469852 E9PCH4 1651 aa22.04■■□□□ 1.12
COL9A3-209ENST00000469852 NPATQ14207 1427 aa22.02■■□□□ 1.12
COL9A3-209ENST00000469852 CFAP65Q6ZU64 1925 aaKnown RBP22.02■■□□□ 1.11
COL9A3-209ENST00000469852 HRCP23327 699 aa22.01■■□□□ 1.11
COL9A3-209ENST00000469852 FBXO41Q8TF61 875 aa22.01■■□□□ 1.11
COL9A3-209ENST00000469852 ARHGAP31Q2M1Z3 1444 aa22■■□□□ 1.11
COL9A3-209ENST00000469852 FBXO31Q5XUX0 539 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-209ENST00000469852 PREX1Q8TCU6 1659 aa21.98■■□□□ 1.11
COL9A3-209ENST00000469852 HSPA2P54652 639 aa21.96■■□□□ 1.11
COL9A3-209ENST00000469852 SLC4A1APQ9BWU0 796 aaKnown RBP21.96■■□□□ 1.11
COL9A3-209ENST00000469852 ERVK-7P63135 1459 aa21.96■■□□□ 1.11
COL9A3-209ENST00000469852 MPHOSPH9Q99550 1183 aa21.95■■□□□ 1.1
COL9A3-209ENST00000469852 SPATA31D1Q6ZQQ2 1576 aa21.95■■□□□ 1.1
COL9A3-209ENST00000469852 PKD2Q13563 968 aa21.94■■□□□ 1.1
COL9A3-209ENST00000469852 FOXD1Q16676 465 aa21.93■■□□□ 1.1
COL9A3-209ENST00000469852 RPRD2Q5VT52 1461 aaKnown RBP21.93■■□□□ 1.1
COL9A3-209ENST00000469852 SYNMO15061 1565 aa21.92■■□□□ 1.1
COL9A3-209ENST00000469852 ACIN1Q9UKV3 1341 aaKnown RBP21.91■■□□□ 1.1
COL9A3-209ENST00000469852 NOS1P29475 1434 aa21.9■■□□□ 1.1
COL9A3-209ENST00000469852 SPHKAPQ2M3C7 1700 aa21.9■■□□□ 1.1
COL9A3-209ENST00000469852 PLA2R1Q13018 1463 aa21.88■■□□□ 1.09
COL9A3-209ENST00000469852 MYO3AQ8NEV4 1616 aa21.88■■□□□ 1.09
COL9A3-209ENST00000469852 TNRQ92752 1358 aa21.87■■□□□ 1.09
COL9A3-209ENST00000469852 UGGT1Q9NYU2 1555 aa21.87■■□□□ 1.09
COL9A3-209ENST00000469852 PTPRTO14522 1441 aa21.86■■□□□ 1.09
COL9A3-209ENST00000469852 DHX57Q6P158 1386 aaKnown RBP21.86■■□□□ 1.09
COL9A3-209ENST00000469852 SETD1BQ9UPS6 1966 aaKnown RBP21.84■■□□□ 1.09
COL9A3-209ENST00000469852 TRPM2O94759 1503 aa21.83■■□□□ 1.09
COL9A3-209ENST00000469852 PIK3C2BO00750 1634 aa21.83■■□□□ 1.08
COL9A3-209ENST00000469852 CLTCL1P53675 1640 aa21.81■■□□□ 1.08
COL9A3-209ENST00000469852 ZNF142P52746 1687 aaPredicted RBP21.8■■□□□ 1.08
COL9A3-209ENST00000469852 CEP170BQ9Y4F5 1589 aaPredicted RBP21.79■■□□□ 1.08
COL9A3-209ENST00000469852 UHRF1BP1Q6BDS2 1440 aa21.78■■□□□ 1.08
COL9A3-209ENST00000469852 NLRP1Q9C000 1473 aa21.77■■□□□ 1.08
COL9A3-209ENST00000469852 ANKRD30BQ9BXX2 1392 aa21.77■■□□□ 1.08
COL9A3-209ENST00000469852 IDI1Q13907 227 aa21.77■■□□□ 1.08
COL9A3-209ENST00000469852 A2ML1A8K2U0 1454 aa21.77■■□□□ 1.07
COL9A3-209ENST00000469852 UBR1Q8IWV7 1749 aa21.75■■□□□ 1.07
COL9A3-209ENST00000469852 MYO5BQ9ULV0 1848 aa21.75■■□□□ 1.07
COL9A3-209ENST00000469852 CERKQ8TCT0 537 aa21.74■■□□□ 1.07
COL9A3-209ENST00000469852 SLC52A1Q9NWF4 448 aa21.73■■□□□ 1.07
COL9A3-209ENST00000469852 ADGRB3O60242 1522 aa21.73■■□□□ 1.07
COL9A3-209ENST00000469852 STRCQ7RTU9 1775 aa21.73■■□□□ 1.07
COL9A3-209ENST00000469852 TMEM131LA2VDJ0 1609 aa21.72■■□□□ 1.07
COL9A3-209ENST00000469852 CCDC144AA2RUR9 1427 aa21.71■■□□□ 1.07
COL9A3-209ENST00000469852 KIF1BO60333 1816 aa21.69■■□□□ 1.06
COL9A3-209ENST00000469852 KDM5AP29375 1690 aaKnown RBP21.69■■□□□ 1.06
COL9A3-209ENST00000469852 CHGAP10645 457 aaKnown RBP21.66■■□□□ 1.06
COL9A3-209ENST00000469852 SIN3AQ96ST3 1273 aa21.64■■□□□ 1.05
COL9A3-209ENST00000469852 SPATA31E1Q6ZUB1 1445 aa21.63■■□□□ 1.05
COL9A3-209ENST00000469852 STAG3Q9UJ98 1225 aa21.63■■□□□ 1.05
COL9A3-209ENST00000469852 DMRT2Q9Y5R5 561 aa21.63■■□□□ 1.05
COL9A3-209ENST00000469852 ARHGAP23Q9P227 1491 aa21.61■■□□□ 1.05
COL9A3-209ENST00000469852 SLIT1O75093 1534 aa21.6■■□□□ 1.05
COL9A3-209ENST00000469852 THEMISQ8N1K5 641 aaPredicted RBP21.59■■□□□ 1.05
COL9A3-209ENST00000469852 TMEM2Q9UHN6 1383 aa21.59■■□□□ 1.05
COL9A3-209ENST00000469852 NEURL4Q96JN8 1562 aa21.58■■□□□ 1.05
COL9A3-209ENST00000469852 ZFYVE9O95405 1425 aa21.58■■□□□ 1.05
COL9A3-209ENST00000469852 CCER1Q8TC90 406 aaPredicted RBP21.58■■□□□ 1.05
COL9A3-209ENST00000469852 NEXMIFQ5QGS0 1516 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 113.1 ms