RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 ERBINQ96RT1 1412 aa18.09■□□□□ 0.49
VPS13D-204ENST00000469054 ANKRD50Q9ULJ7 1429 aa18.06■□□□□ 0.48
VPS13D-204ENST00000469054 MADDQ8WXG6 1647 aa18.05■□□□□ 0.48
VPS13D-204ENST00000469054 PTPRMP28827 1452 aa18.05■□□□□ 0.48
VPS13D-204ENST00000469054 CNTLNQ9NXG0 1405 aa18.04■□□□□ 0.48
VPS13D-204ENST00000469054 WASHC2CQ9Y4E1 1318 aa18.02■□□□□ 0.48
VPS13D-204ENST00000469054 EIF2AK4Q9P2K8 1649 aaKnown RBP18.01■□□□□ 0.47
VPS13D-204ENST00000469054 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.01■□□□□ 0.47
VPS13D-204ENST00000469054 CEBPAP49715 358 aaPredicted RBP18■□□□□ 0.47
VPS13D-204ENST00000469054 ZMYM3Q14202 1370 aa18■□□□□ 0.47
VPS13D-204ENST00000469054 NAIPQ13075 1403 aa17.98■□□□□ 0.47
VPS13D-204ENST00000469054 RIMS1Q86UR5 1692 aaKnown RBP17.98■□□□□ 0.47
VPS13D-204ENST00000469054 FER1L4A9Z1Z3 1794 aa17.98■□□□□ 0.47
VPS13D-204ENST00000469054 RNF17Q9BXT8 1623 aaKnown RBP17.98■□□□□ 0.47
VPS13D-204ENST00000469054 HFM1A2PYH4 1435 aa17.97■□□□□ 0.47
VPS13D-204ENST00000469054 KANK1Q14678 1352 aa17.96■□□□□ 0.47
VPS13D-204ENST00000469054 PIAS4Q8N2W9 510 aaPredicted RBP17.96■□□□□ 0.47
VPS13D-204ENST00000469054 FAM135AQ9P2D6 1515 aa17.96■□□□□ 0.47
VPS13D-204ENST00000469054 KDM5DQ9BY66 1539 aa17.95■□□□□ 0.46
VPS13D-204ENST00000469054 MROH1Q8NDA8 1641 aa17.94■□□□□ 0.46
VPS13D-204ENST00000469054 PRDM15P57071 1507 aaPredicted RBP17.93■□□□□ 0.46
VPS13D-204ENST00000469054 ABCC3O15438 1527 aa17.93■□□□□ 0.46
VPS13D-204ENST00000469054 NUP155O75694 1391 aa17.91■□□□□ 0.46
VPS13D-204ENST00000469054 DEPDC5O75140 1603 aa17.9■□□□□ 0.46
VPS13D-204ENST00000469054 CLTCQ00610 1675 aaKnown RBP17.9■□□□□ 0.46
VPS13D-204ENST00000469054 MROH2AA6NES4 1674 aa17.89■□□□□ 0.45
VPS13D-204ENST00000469054 NPATQ14207 1427 aa17.89■□□□□ 0.45
VPS13D-204ENST00000469054 VWDEQ8N2E2 1590 aa17.88■□□□□ 0.45
VPS13D-204ENST00000469054 FBXO31Q5XUX0 539 aaPredicted RBP17.88■□□□□ 0.45
VPS13D-204ENST00000469054 PZPP20742 1482 aa17.88■□□□□ 0.45
VPS13D-204ENST00000469054 LMTK2Q8IWU2 1503 aa17.88■□□□□ 0.45
VPS13D-204ENST00000469054 SETD5Q9C0A6 1442 aa17.87■□□□□ 0.45
VPS13D-204ENST00000469054 C3P01024 1663 aa17.87■□□□□ 0.45
VPS13D-204ENST00000469054 TRIM52Q96A61 297 aa17.86■□□□□ 0.45
VPS13D-204ENST00000469054 ARHGAP31Q2M1Z3 1444 aa17.86■□□□□ 0.45
VPS13D-204ENST00000469054 UNC13BO14795 1591 aa17.86■□□□□ 0.45
VPS13D-204ENST00000469054 ZC3H13Q5T200 1668 aaKnown RBP17.86■□□□□ 0.45
VPS13D-204ENST00000469054 GCC2Q8IWJ2 1684 aa17.85■□□□□ 0.45
VPS13D-204ENST00000469054 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
VPS13D-204ENST00000469054 TNRQ92752 1358 aa17.82■□□□□ 0.44
VPS13D-204ENST00000469054 ACIN1Q9UKV3 1341 aaKnown RBP17.82■□□□□ 0.44
VPS13D-204ENST00000469054 CEP152O94986 1710 aa17.81■□□□□ 0.44
VPS13D-204ENST00000469054 UHRF1BP1Q6BDS2 1440 aa17.81■□□□□ 0.44
VPS13D-204ENST00000469054 RAB3GAP2Q9H2M9 1393 aa17.8■□□□□ 0.44
VPS13D-204ENST00000469054 CAMSAP1Q5T5Y3 1602 aa17.8■□□□□ 0.44
VPS13D-204ENST00000469054 HRCP23327 699 aa17.79■□□□□ 0.44
VPS13D-204ENST00000469054 ERVK-7P63135 1459 aa17.79■□□□□ 0.44
VPS13D-204ENST00000469054 EFCAB6Q5THR3 1501 aa17.78■□□□□ 0.44
VPS13D-204ENST00000469054 LMTK3Q96Q04 1460 aa17.78■□□□□ 0.44
VPS13D-204ENST00000469054 SLC4A1APQ9BWU0 796 aaKnown RBP17.78■□□□□ 0.44
VPS13D-204ENST00000469054 IQGAP3Q86VI3 1631 aa17.78■□□□□ 0.44
VPS13D-204ENST00000469054 SETD1BQ9UPS6 1966 aaKnown RBP17.77■□□□□ 0.44
VPS13D-204ENST00000469054 RPRD2Q5VT52 1461 aaKnown RBP17.77■□□□□ 0.44
VPS13D-204ENST00000469054 SPATA31D1Q6ZQQ2 1576 aa17.77■□□□□ 0.44
VPS13D-204ENST00000469054 NOS1P29475 1434 aa17.75■□□□□ 0.43
VPS13D-204ENST00000469054 TET3O43151 1660 aa17.75■□□□□ 0.43
VPS13D-204ENST00000469054 HSPA2P54652 639 aa17.75■□□□□ 0.43
VPS13D-204ENST00000469054 PKD2Q13563 968 aa17.74■□□□□ 0.43
VPS13D-204ENST00000469054 MPHOSPH9Q99550 1183 aa17.74■□□□□ 0.43
VPS13D-204ENST00000469054 SLC52A1Q9NWF4 448 aa17.73■□□□□ 0.43
VPS13D-204ENST00000469054 NLRP1Q9C000 1473 aa17.73■□□□□ 0.43
VPS13D-204ENST00000469054 PREX1Q8TCU6 1659 aa17.72■□□□□ 0.43
VPS13D-204ENST00000469054 A2ML1A8K2U0 1454 aa17.71■□□□□ 0.43
VPS13D-204ENST00000469054 IDI1Q13907 227 aa17.71■□□□□ 0.43
VPS13D-204ENST00000469054 MYO3AQ8NEV4 1616 aa17.69■□□□□ 0.42
VPS13D-204ENST00000469054 E9PCH4 1651 aa17.68■□□□□ 0.42
VPS13D-204ENST00000469054 THEMISQ8N1K5 641 aaPredicted RBP17.68■□□□□ 0.42
VPS13D-204ENST00000469054 CEP170BQ9Y4F5 1589 aaPredicted RBP17.68■□□□□ 0.42
VPS13D-204ENST00000469054 PTPRTO14522 1441 aa17.67■□□□□ 0.42
VPS13D-204ENST00000469054 STAG3Q9UJ98 1225 aa17.66■□□□□ 0.42
VPS13D-204ENST00000469054 CFAP65Q6ZU64 1925 aaKnown RBP17.66■□□□□ 0.42
VPS13D-204ENST00000469054 SYNMO15061 1565 aa17.66■□□□□ 0.42
VPS13D-204ENST00000469054 UGGT1Q9NYU2 1555 aa17.65■□□□□ 0.42
VPS13D-204ENST00000469054 PLA2R1Q13018 1463 aa17.63■□□□□ 0.41
VPS13D-204ENST00000469054 ZNF142P52746 1687 aaPredicted RBP17.62■□□□□ 0.41
VPS13D-204ENST00000469054 CHGAP10645 457 aaKnown RBP17.61■□□□□ 0.41
VPS13D-204ENST00000469054 PCGF6Q9BYE7 350 aa17.61■□□□□ 0.41
VPS13D-204ENST00000469054 ANKLE2Q86XL3 938 aa17.6■□□□□ 0.41
VPS13D-204ENST00000469054 NCKAP5LQ9HCH0 1330 aa17.59■□□□□ 0.41
VPS13D-204ENST00000469054 TRPM2O94759 1503 aa17.58■□□□□ 0.41
VPS13D-204ENST00000469054 MSH5O43196 834 aa17.58■□□□□ 0.4
VPS13D-204ENST00000469054 PIK3C2BO00750 1634 aa17.58■□□□□ 0.4
VPS13D-204ENST00000469054 TMEM2Q9UHN6 1383 aa17.57■□□□□ 0.4
VPS13D-204ENST00000469054 DMRT2Q9Y5R5 561 aa17.57■□□□□ 0.4
VPS13D-204ENST00000469054 TXNDC2Q86VQ3 553 aa17.56■□□□□ 0.4
VPS13D-204ENST00000469054 ADGRB3O60242 1522 aa17.56■□□□□ 0.4
VPS13D-204ENST00000469054 SPHKAPQ2M3C7 1700 aa17.55■□□□□ 0.4
VPS13D-204ENST00000469054 EID1Q9Y6B2 187 aa17.55■□□□□ 0.4
VPS13D-204ENST00000469054 ARHGAP23Q9P227 1491 aa17.55■□□□□ 0.4
VPS13D-204ENST00000469054 UBR1Q8IWV7 1749 aa17.55■□□□□ 0.4
VPS13D-204ENST00000469054 CCDC144AA2RUR9 1427 aa17.55■□□□□ 0.4
VPS13D-204ENST00000469054 ANKRD30BQ9BXX2 1392 aa17.54■□□□□ 0.4
VPS13D-204ENST00000469054 LTKP29376 864 aa17.54■□□□□ 0.4
VPS13D-204ENST00000469054 SLIT1O75093 1534 aa17.53■□□□□ 0.4
VPS13D-204ENST00000469054 HDGFP51858 240 aaKnown RBP17.53■□□□□ 0.4
VPS13D-204ENST00000469054 KDM5AP29375 1690 aaKnown RBP17.52■□□□□ 0.4
VPS13D-204ENST00000469054 TMEM131LA2VDJ0 1609 aa17.51■□□□□ 0.39
VPS13D-204ENST00000469054 CLTCL1P53675 1640 aa17.51■□□□□ 0.39
VPS13D-204ENST00000469054 ZNF326Q5BKZ1 582 aaKnown RBP17.51■□□□□ 0.39
VPS13D-204ENST00000469054 STRCQ7RTU9 1775 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms