RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 KIF3BO15066 747 aa31.07■■■□□ 2.56
SKA3-205ENST00000465471 MROH1Q8NDA8 1641 aa31.06■■■□□ 2.56
SKA3-205ENST00000465471 PPP6R1Q9UPN7 881 aa31.06■■■□□ 2.56
SKA3-205ENST00000465471 CLTCQ00610 1675 aaKnown RBP31.03■■■□□ 2.56
SKA3-205ENST00000465471 GGT6Q6P531 493 aa31.03■■■□□ 2.56
SKA3-205ENST00000465471 DEPDC5O75140 1603 aa31.02■■■□□ 2.56
SKA3-205ENST00000465471 C3P01024 1663 aa31.02■■■□□ 2.56
SKA3-205ENST00000465471 KDM5DQ9BY66 1539 aa31■■■□□ 2.55
SKA3-205ENST00000465471 PRDM15P57071 1507 aaPredicted RBP30.99■■■□□ 2.55
SKA3-205ENST00000465471 ZC3H13Q5T200 1668 aaKnown RBP30.97■■■□□ 2.55
SKA3-205ENST00000465471 ITGAEP38570 1179 aa30.96■■■□□ 2.55
SKA3-205ENST00000465471 ESF1Q9H501 851 aaKnown RBP30.96■■■□□ 2.55
SKA3-205ENST00000465471 ANKRD50Q9ULJ7 1429 aa30.96■■■□□ 2.55
SKA3-205ENST00000465471 ABCC3O15438 1527 aa30.93■■■□□ 2.54
SKA3-205ENST00000465471 ZMYM3Q14202 1370 aa30.92■■■□□ 2.54
SKA3-205ENST00000465471 CEBPAP49715 358 aaPredicted RBP30.9■■■□□ 2.54
SKA3-205ENST00000465471 VWDEQ8N2E2 1590 aa30.9■■■□□ 2.54
SKA3-205ENST00000465471 CEP152O94986 1710 aa30.88■■■□□ 2.53
SKA3-205ENST00000465471 GCC2Q8IWJ2 1684 aa30.87■■■□□ 2.53
SKA3-205ENST00000465471 WASHC2CQ9Y4E1 1318 aa30.86■■■□□ 2.53
SKA3-205ENST00000465471 UNC13BO14795 1591 aa30.86■■■□□ 2.53
SKA3-205ENST00000465471 NPATQ14207 1427 aa30.85■■■□□ 2.53
SKA3-205ENST00000465471 PZPP20742 1482 aa30.83■■■□□ 2.53
SKA3-205ENST00000465471 NAIPQ13075 1403 aa30.83■■■□□ 2.53
SKA3-205ENST00000465471 PREX1Q8TCU6 1659 aa30.83■■■□□ 2.53
SKA3-205ENST00000465471 CAMSAP1Q5T5Y3 1602 aa30.83■■■□□ 2.53
SKA3-205ENST00000465471 SETD1BQ9UPS6 1966 aaKnown RBP30.83■■■□□ 2.53
SKA3-205ENST00000465471 LMTK2Q8IWU2 1503 aa30.83■■■□□ 2.53
SKA3-205ENST00000465471 PLPPR3Q6T4P5 718 aa30.82■■■□□ 2.52
SKA3-205ENST00000465471 HFM1A2PYH4 1435 aa30.81■■■□□ 2.52
SKA3-205ENST00000465471 LMTK3Q96Q04 1460 aa30.8■■■□□ 2.52
SKA3-205ENST00000465471 KANK1Q14678 1352 aa30.78■■■□□ 2.52
SKA3-205ENST00000465471 ARHGAP31Q2M1Z3 1444 aa30.76■■■□□ 2.51
SKA3-205ENST00000465471 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.74■■■□□ 2.519e-6■■■□□ 18.9
SKA3-205ENST00000465471 IQGAP3Q86VI3 1631 aa30.72■■■□□ 2.51
SKA3-205ENST00000465471 EFCAB6Q5THR3 1501 aa30.72■■■□□ 2.51
SKA3-205ENST00000465471 MYO3AQ8NEV4 1616 aa30.71■■■□□ 2.51
SKA3-205ENST00000465471 SPATA31D1Q6ZQQ2 1576 aa30.71■■■□□ 2.51
SKA3-205ENST00000465471 UHRF1BP1Q6BDS2 1440 aa30.7■■■□□ 2.5
SKA3-205ENST00000465471 TET3O43151 1660 aa30.69■■■□□ 2.5
SKA3-205ENST00000465471 ZNF142P52746 1687 aaPredicted RBP30.68■■■□□ 2.5
SKA3-205ENST00000465471 FBXO31Q5XUX0 539 aaPredicted RBP30.67■■■□□ 2.5
SKA3-205ENST00000465471 ERVK-7P63135 1459 aa30.67■■■□□ 2.5
SKA3-205ENST00000465471 TNRQ92752 1358 aa30.64■■■□□ 2.5
SKA3-205ENST00000465471 RPRD2Q5VT52 1461 aaKnown RBP30.61■■■□□ 2.49
SKA3-205ENST00000465471 CEP170BQ9Y4F5 1589 aaPredicted RBP30.61■■■□□ 2.49
SKA3-205ENST00000465471 NUP155O75694 1391 aa30.6■■■□□ 2.49
SKA3-205ENST00000465471 CFAP65Q6ZU64 1925 aaKnown RBP30.59■■■□□ 2.49
SKA3-205ENST00000465471 A2ML1A8K2U0 1454 aa30.57■■■□□ 2.48
SKA3-205ENST00000465471 NLRP1Q9C000 1473 aa30.57■■■□□ 2.48
SKA3-205ENST00000465471 E9PCH4 1651 aa30.57■■■□□ 2.48
SKA3-205ENST00000465471 NOS1P29475 1434 aa30.56■■■□□ 2.48
SKA3-205ENST00000465471 HSPA2P54652 639 aa30.53■■■□□ 2.48
SKA3-205ENST00000465471 SYNMO15061 1565 aa30.53■■■□□ 2.48
SKA3-205ENST00000465471 SETD5Q9C0A6 1442 aa30.52■■■□□ 2.48
SKA3-205ENST00000465471 STRCQ7RTU9 1775 aa30.45■■■□□ 2.46
SKA3-205ENST00000465471 UGGT1Q9NYU2 1555 aa30.44■■■□□ 2.46
SKA3-205ENST00000465471 PLA2R1Q13018 1463 aa30.44■■■□□ 2.46
SKA3-205ENST00000465471 RAB3GAP2Q9H2M9 1393 aa30.42■■■□□ 2.46
SKA3-205ENST00000465471 UBR1Q8IWV7 1749 aa30.42■■■□□ 2.46
SKA3-205ENST00000465471 PIK3C2BO00750 1634 aa30.42■■■□□ 2.46
SKA3-205ENST00000465471 KDM5AP29375 1690 aaKnown RBP30.41■■■□□ 2.46
SKA3-205ENST00000465471 ACIN1Q9UKV3 1341 aaKnown RBP30.4■■■□□ 2.46
SKA3-205ENST00000465471 SPHKAPQ2M3C7 1700 aa30.39■■■□□ 2.46
SKA3-205ENST00000465471 TRIM52Q96A61 297 aa30.39■■■□□ 2.46
SKA3-205ENST00000465471 PTPRTO14522 1441 aa30.38■■■□□ 2.45
SKA3-205ENST00000465471 SLC52A1Q9NWF4 448 aa30.35■■■□□ 2.45
SKA3-205ENST00000465471 ADGRB3O60242 1522 aa30.33■■■□□ 2.45
SKA3-205ENST00000465471 IDI1Q13907 227 aa30.33■■■□□ 2.45
SKA3-205ENST00000465471 HRCP23327 699 aa30.32■■■□□ 2.44
SKA3-205ENST00000465471 TRPM2O94759 1503 aa30.32■■■□□ 2.44
SKA3-205ENST00000465471 THEMISQ8N1K5 641 aaPredicted RBP30.31■■■□□ 2.44
SKA3-205ENST00000465471 SLC4A1APQ9BWU0 796 aaKnown RBP30.31■■■□□ 2.44
SKA3-205ENST00000465471 POLR1AO95602 1720 aaPredicted RBP30.3■■■□□ 2.44
SKA3-205ENST00000465471 SLIT1O75093 1534 aa30.29■■■□□ 2.44
SKA3-205ENST00000465471 PKD2Q13563 968 aa30.29■■■□□ 2.44
SKA3-205ENST00000465471 ARHGAP23Q9P227 1491 aa30.29■■■□□ 2.44
SKA3-205ENST00000465471 TMEM131LA2VDJ0 1609 aa30.27■■■□□ 2.44
SKA3-205ENST00000465471 NEURL4Q96JN8 1562 aa30.27■■■□□ 2.44
SKA3-205ENST00000465471 MPHOSPH9Q99550 1183 aa30.25■■■□□ 2.43
SKA3-205ENST00000465471 CLTCL1P53675 1640 aa30.24■■■□□ 2.43
SKA3-205ENST00000465471 MYO5BQ9ULV0 1848 aa30.24■■■□□ 2.43
SKA3-205ENST00000465471 NCKAP5LQ9HCH0 1330 aa30.22■■■□□ 2.43
SKA3-205ENST00000465471 TRIM26Q12899 539 aaPredicted RBP30.21■■■□□ 2.43
SKA3-205ENST00000465471 MED14O60244 1454 aa30.2■■■□□ 2.43
SKA3-205ENST00000465471 TMEM2Q9UHN6 1383 aa30.2■■■□□ 2.43
SKA3-205ENST00000465471 DMRT2Q9Y5R5 561 aa30.2■■■□□ 2.43
SKA3-205ENST00000465471 ANKLE2Q86XL3 938 aa30.17■■■□□ 2.42
SKA3-205ENST00000465471 STAG3Q9UJ98 1225 aa30.16■■■□□ 2.42
SKA3-205ENST00000465471 SCAF11Q99590 1463 aaKnown RBP30.16■■■□□ 2.42
SKA3-205ENST00000465471 FOXD1Q16676 465 aa30.15■■■□□ 2.42
SKA3-205ENST00000465471 ZFYVE9O95405 1425 aa30.13■■■□□ 2.41
SKA3-205ENST00000465471 IQGAP1P46940 1657 aa30.12■■■□□ 2.41
SKA3-205ENST00000465471 KIF1BO60333 1816 aa30.12■■■□□ 2.41
SKA3-205ENST00000465471 LTKP29376 864 aa30.11■■■□□ 2.41
SKA3-205ENST00000465471 NPHP4O75161 1426 aaPredicted RBP30.11■■■□□ 2.41
SKA3-205ENST00000465471 RIMS2Q9UQ26 1411 aa30.06■■■□□ 2.4
SKA3-205ENST00000465471 TXNDC2Q86VQ3 553 aa30.06■■■□□ 2.4
SKA3-205ENST00000465471 EID1Q9Y6B2 187 aa30.05■■■□□ 2.4
SKA3-205ENST00000465471 CCDC144AA2RUR9 1427 aa30.05■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms