RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 TNRQ92752 1358 aa23.34■■□□□ 1.33
SMC1A-204ENST00000463684 MBD5Q9P267 1494 aa23.34■■□□□ 1.33
SMC1A-204ENST00000463684 DNMT1P26358 1616 aaKnown RBP23.33■■□□□ 1.33
SMC1A-204ENST00000463684 ANKLE2Q86XL3 938 aa23.33■■□□□ 1.33
SMC1A-204ENST00000463684 WASHC2CQ9Y4E1 1318 aa23.32■■□□□ 1.32
SMC1A-204ENST00000463684 THEMISQ8N1K5 641 aaPredicted RBP23.31■■□□□ 1.32
SMC1A-204ENST00000463684 CPS1P31327 1500 aa23.3■■□□□ 1.32
SMC1A-204ENST00000463684 RSPH4AQ5TD94 716 aa23.29■■□□□ 1.32
SMC1A-204ENST00000463684 SHANK2Q9UPX8 1470 aa23.29■■□□□ 1.32
SMC1A-204ENST00000463684 TIAM1Q13009 1591 aa23.28■■□□□ 1.32
SMC1A-204ENST00000463684 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.27■■□□□ 1.31
SMC1A-204ENST00000463684 PZPP20742 1482 aa23.26■■□□□ 1.31
SMC1A-204ENST00000463684 CEP162Q5TB80 1403 aa23.25■■□□□ 1.31
SMC1A-204ENST00000463684 EHBP1L1Q8N3D4 1523 aa23.25■■□□□ 1.31
SMC1A-204ENST00000463684 KDM5DQ9BY66 1539 aa23.24■■□□□ 1.31
SMC1A-204ENST00000463684 MIA2Q96PC5 1412 aa23.24■■□□□ 1.31
SMC1A-204ENST00000463684 CCDC141Q6ZP82 1450 aa23.23■■□□□ 1.31
SMC1A-204ENST00000463684 FAM135AQ9P2D6 1515 aa23.22■■□□□ 1.31
SMC1A-204ENST00000463684 NEURL4Q96JN8 1562 aa23.22■■□□□ 1.31
SMC1A-204ENST00000463684 TSPY4P0CV99 314 aa23.21■■□□□ 1.31
SMC1A-204ENST00000463684 TSPY10P0CW01 314 aa23.21■■□□□ 1.31
SMC1A-204ENST00000463684 NLRP1Q9C000 1473 aa23.21■■□□□ 1.31
SMC1A-204ENST00000463684 POLR1AO95602 1720 aaPredicted RBP23.21■■□□□ 1.31
SMC1A-204ENST00000463684 MED1Q15648 1581 aaPredicted RBP23.2■■□□□ 1.3
SMC1A-204ENST00000463684 PHF23Q9BUL5 403 aaPredicted RBP23.2■■□□□ 1.3
SMC1A-204ENST00000463684 NPHP4O75161 1426 aaPredicted RBP23.19■■□□□ 1.3
SMC1A-204ENST00000463684 UGGT1Q9NYU2 1555 aa23.18■■□□□ 1.3
SMC1A-204ENST00000463684 MED14O60244 1454 aa23.16■■□□□ 1.3
SMC1A-204ENST00000463684 CAMSAP2Q08AD1 1489 aa23.16■■□□□ 1.3
SMC1A-204ENST00000463684 VWDEQ8N2E2 1590 aa23.14■■□□□ 1.3
SMC1A-204ENST00000463684 NCOA2Q15596 1464 aa23.14■■□□□ 1.29
SMC1A-204ENST00000463684 DEPDC5O75140 1603 aa23.11■■□□□ 1.29
SMC1A-204ENST00000463684 SENP3Q9H4L4 574 aaPredicted RBP23.1■■□□□ 1.29
SMC1A-204ENST00000463684 ARHGEF5Q12774 1597 aa23.06■■□□□ 1.28
SMC1A-204ENST00000463684 IQGAP1P46940 1657 aa23.05■■□□□ 1.28
SMC1A-204ENST00000463684 LRRC7Q96NW7 1537 aa23.04■■□□□ 1.28
SMC1A-204ENST00000463684 ALKQ9UM73 1620 aa23.04■■□□□ 1.28
SMC1A-204ENST00000463684 ABCC3O15438 1527 aa23.02■■□□□ 1.28
SMC1A-204ENST00000463684 ERVK-7P63135 1459 aa23■■□□□ 1.27
SMC1A-204ENST00000463684 TXNDC2Q86VQ3 553 aa22.99■■□□□ 1.27
SMC1A-204ENST00000463684 RNF17Q9BXT8 1623 aaKnown RBP22.99■■□□□ 1.27
SMC1A-204ENST00000463684 ZC3H13Q5T200 1668 aaKnown RBP22.97■■□□□ 1.27
SMC1A-204ENST00000463684 EID1Q9Y6B2 187 aa22.97■■□□□ 1.27
SMC1A-204ENST00000463684 SCAF11Q99590 1463 aaKnown RBP22.96■■□□□ 1.27
SMC1A-204ENST00000463684 SYNMO15061 1565 aa22.96■■□□□ 1.27
SMC1A-204ENST00000463684 LTKP29376 864 aa22.95■■□□□ 1.26
SMC1A-204ENST00000463684 MAST1Q9Y2H9 1570 aa22.95■■□□□ 1.26
SMC1A-204ENST00000463684 STRCP1A6NGW2 1772 aa22.94■■□□□ 1.26
SMC1A-204ENST00000463684 LRRC9Q6ZRR7 1453 aa22.93■■□□□ 1.26
SMC1A-204ENST00000463684 EIF2AK4Q9P2K8 1649 aaKnown RBP22.93■■□□□ 1.26
SMC1A-204ENST00000463684 STAG3Q9UJ98 1225 aa22.9■■□□□ 1.26
SMC1A-204ENST00000463684 UBR1Q8IWV7 1749 aa22.89■■□□□ 1.26
SMC1A-204ENST00000463684 MYOM3Q5VTT5 1437 aa22.89■■□□□ 1.25
SMC1A-204ENST00000463684 DUOX2Q9NRD8 1548 aa22.88■■□□□ 1.25
SMC1A-204ENST00000463684 ARHGAP23Q9P227 1491 aa22.88■■□□□ 1.25
SMC1A-204ENST00000463684 RGS17Q9UGC6 210 aaPredicted RBP22.88■■□□□ 1.25
SMC1A-204ENST00000463684 SLIT1O75093 1534 aa22.87■■□□□ 1.25
SMC1A-204ENST00000463684 MROH1Q8NDA8 1641 aa22.87■■□□□ 1.25
SMC1A-204ENST00000463684 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.87■■□□□ 1.254e-8■■■□□ 17.5
SMC1A-204ENST00000463684 ARHGAP31Q2M1Z3 1444 aa22.87■■□□□ 1.25
SMC1A-204ENST00000463684 KANK4Q5T7N3 995 aaPredicted RBP22.86■■□□□ 1.25
SMC1A-204ENST00000463684 VPS8Q8N3P4 1428 aa22.85■■□□□ 1.25
SMC1A-204ENST00000463684 RRP7BPQ9NSQ0 103 aa22.85■■□□□ 1.25
SMC1A-204ENST00000463684 CEP152O94986 1710 aa22.85■■□□□ 1.25
SMC1A-204ENST00000463684 KIF15Q9NS87 1388 aa22.84■■□□□ 1.25
SMC1A-204ENST00000463684 FAM135BQ49AJ0 1406 aa22.83■■□□□ 1.25
SMC1A-204ENST00000463684 TMEM2Q9UHN6 1383 aa22.83■■□□□ 1.25
SMC1A-204ENST00000463684 CFAP65Q6ZU64 1925 aaKnown RBP22.82■■□□□ 1.24
SMC1A-204ENST00000463684 KANK1Q14678 1352 aa22.82■■□□□ 1.24
SMC1A-204ENST00000463684 ERBINQ96RT1 1412 aa22.81■■□□□ 1.24
SMC1A-204ENST00000463684 KCNA6P17658 529 aa22.8■■□□□ 1.24
SMC1A-204ENST00000463684 TMEM94Q12767 1356 aa22.79■■□□□ 1.24
SMC1A-204ENST00000463684 PROSER2Q86WR7 435 aaPredicted RBP22.79■■□□□ 1.24
SMC1A-204ENST00000463684 PRDM15P57071 1507 aaPredicted RBP22.78■■□□□ 1.24
SMC1A-204ENST00000463684 MAP3K1Q13233 1512 aa22.77■■□□□ 1.24
SMC1A-204ENST00000463684 IDI1Q13907 227 aa22.77■■□□□ 1.24
SMC1A-204ENST00000463684 SLC26A8Q96RN1 970 aa22.77■■□□□ 1.24
SMC1A-204ENST00000463684 POTEAQ6S8J7 498 aa22.75■■□□□ 1.23
SMC1A-204ENST00000463684 PIK3C2BO00750 1634 aa22.75■■□□□ 1.23
SMC1A-204ENST00000463684 ABCC5O15440 1437 aa22.74■■□□□ 1.23
SMC1A-204ENST00000463684 BCANQ96GW7 911 aa22.74■■□□□ 1.23
SMC1A-204ENST00000463684 XIRP1Q702N8 1843 aaKnown RBP22.73■■□□□ 1.23
SMC1A-204ENST00000463684 EFCAB6Q5THR3 1501 aa22.73■■□□□ 1.23
SMC1A-204ENST00000463684 LOC105371045A0A1W2PR82 267 aa22.73■■□□□ 1.23
SMC1A-204ENST00000463684 RBM33Q96EV2 1170 aaKnown RBP22.73■■□□□ 1.23
SMC1A-204ENST00000463684 APLP2Q06481 763 aa22.71■■□□□ 1.23
SMC1A-204ENST00000463684 CHIC2Q9UKJ5 165 aa22.69■■□□□ 1.22
SMC1A-204ENST00000463684 DAPK1P53355 1430 aa22.68■■□□□ 1.22
SMC1A-204ENST00000463684 ANKRD30AQ9BXX3 1397 aa22.68■■□□□ 1.22
SMC1A-204ENST00000463684 SLC52A1Q9NWF4 448 aa22.68■■□□□ 1.22
SMC1A-204ENST00000463684 MSH6P52701 1360 aa22.67■■□□□ 1.22
SMC1A-204ENST00000463684 SLAIN2Q9P270 581 aa22.67■■□□□ 1.22
SMC1A-204ENST00000463684 TET3O43151 1660 aa22.66■■□□□ 1.22
SMC1A-204ENST00000463684 KDM5AP29375 1690 aaKnown RBP22.66■■□□□ 1.22
SMC1A-204ENST00000463684 ROBO1Q9Y6N7 1651 aa22.66■■□□□ 1.22
SMC1A-204ENST00000463684 LMTK2Q8IWU2 1503 aa22.66■■□□□ 1.22
SMC1A-204ENST00000463684 PTPN23Q9H3S7 1636 aa22.64■■□□□ 1.22
SMC1A-204ENST00000463684 HDGFP51858 240 aaKnown RBP22.64■■□□□ 1.21
SMC1A-204ENST00000463684 NKTRP30414 1462 aaKnown RBP22.64■■□□□ 1.21
SMC1A-204ENST00000463684 CROCC2H7BZ55 1655 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms