RNA–Protein interactions for RNA: ENST00000461654.1

TMEM39A-203, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 588 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-203ENST00000461654 CLTCQ00610 1675 aaKnown RBP22.77■■□□□ 1.24
TMEM39A-203ENST00000461654 PTPRKQ15262 1439 aa22.75■■□□□ 1.23
TMEM39A-203ENST00000461654 DMRT2Q9Y5R5 561 aa22.75■■□□□ 1.23
TMEM39A-203ENST00000461654 FAM135AQ9P2D6 1515 aa22.75■■□□□ 1.23
TMEM39A-203ENST00000461654 ABCC5O15440 1437 aa22.7■■□□□ 1.22
TMEM39A-203ENST00000461654 STRCQ7RTU9 1775 aa22.69■■□□□ 1.22
TMEM39A-203ENST00000461654 WASHC2CQ9Y4E1 1318 aa22.69■■□□□ 1.22
TMEM39A-203ENST00000461654 SHANK2Q9UPX8 1470 aa22.68■■□□□ 1.22
TMEM39A-203ENST00000461654 KDM5DQ9BY66 1539 aa22.67■■□□□ 1.22
TMEM39A-203ENST00000461654 FBXO41Q8TF61 875 aa22.66■■□□□ 1.22
TMEM39A-203ENST00000461654 PTPRTO14522 1441 aa22.65■■□□□ 1.22
TMEM39A-203ENST00000461654 DUOX2Q9NRD8 1548 aa22.65■■□□□ 1.22
TMEM39A-203ENST00000461654 DAPK1P53355 1430 aa22.65■■□□□ 1.22
TMEM39A-203ENST00000461654 NCOA1Q15788 1441 aa22.65■■□□□ 1.22
TMEM39A-203ENST00000461654 EIF2AK4Q9P2K8 1649 aaKnown RBP22.64■■□□□ 1.22
TMEM39A-203ENST00000461654 PZPP20742 1482 aa22.64■■□□□ 1.21
TMEM39A-203ENST00000461654 RNF17Q9BXT8 1623 aaKnown RBP22.64■■□□□ 1.21
TMEM39A-203ENST00000461654 DNMT1P26358 1616 aaKnown RBP22.62■■□□□ 1.21
TMEM39A-203ENST00000461654 MYO3AQ8NEV4 1616 aa22.61■■□□□ 1.21
TMEM39A-203ENST00000461654 FBXO31Q5XUX0 539 aaPredicted RBP22.61■■□□□ 1.21
TMEM39A-203ENST00000461654 KIF15Q9NS87 1388 aa22.61■■□□□ 1.21
TMEM39A-203ENST00000461654 CROCC2H7BZ55 1655 aa22.6■■□□□ 1.21
TMEM39A-203ENST00000461654 ZNF142P52746 1687 aaPredicted RBP22.6■■□□□ 1.21
TMEM39A-203ENST00000461654 CEP170BQ9Y4F5 1589 aaPredicted RBP22.59■■□□□ 1.21
TMEM39A-203ENST00000461654 RRP7BPQ9NSQ0 103 aa22.59■■□□□ 1.21
TMEM39A-203ENST00000461654 CAMSAP1Q5T5Y3 1602 aa22.59■■□□□ 1.21
TMEM39A-203ENST00000461654 PLA2R1Q13018 1463 aa22.59■■□□□ 1.21
TMEM39A-203ENST00000461654 ERBINQ96RT1 1412 aa22.58■■□□□ 1.21
TMEM39A-203ENST00000461654 CERKQ8TCT0 537 aa22.58■■□□□ 1.21
TMEM39A-203ENST00000461654 TNRQ92752 1358 aa22.58■■□□□ 1.21
TMEM39A-203ENST00000461654 CHIC2Q9UKJ5 165 aa22.57■■□□□ 1.2
TMEM39A-203ENST00000461654 A2ML1A8K2U0 1454 aa22.57■■□□□ 1.2
TMEM39A-203ENST00000461654 ABCC3O15438 1527 aa22.57■■□□□ 1.2
TMEM39A-203ENST00000461654 ANKRD30AQ9BXX3 1397 aa22.56■■□□□ 1.2
TMEM39A-203ENST00000461654 PKD2Q13563 968 aa22.56■■□□□ 1.2
TMEM39A-203ENST00000461654 MROH1Q8NDA8 1641 aa22.56■■□□□ 1.2
TMEM39A-203ENST00000461654 SETD5Q9C0A6 1442 aa22.56■■□□□ 1.2
TMEM39A-203ENST00000461654 ZC3H13Q5T200 1668 aaKnown RBP22.55■■□□□ 1.2
TMEM39A-203ENST00000461654 ROCK1Q13464 1354 aa22.53■■□□□ 1.2
TMEM39A-203ENST00000461654 NCKAP5LQ9HCH0 1330 aa22.53■■□□□ 1.2
TMEM39A-203ENST00000461654 HFM1A2PYH4 1435 aa22.52■■□□□ 1.2
TMEM39A-203ENST00000461654 NLRP1Q9C000 1473 aa22.52■■□□□ 1.2
TMEM39A-203ENST00000461654 ADGRL2O95490 1459 aa22.51■■□□□ 1.19
TMEM39A-203ENST00000461654 PRDM15P57071 1507 aaPredicted RBP22.5■■□□□ 1.19
TMEM39A-203ENST00000461654 ARHGAP31Q2M1Z3 1444 aa22.48■■□□□ 1.19
TMEM39A-203ENST00000461654 SPATA31D1Q6ZQQ2 1576 aa22.48■■□□□ 1.19
TMEM39A-203ENST00000461654 HRCP23327 699 aa22.48■■□□□ 1.19
TMEM39A-203ENST00000461654 THEMISQ8N1K5 641 aaPredicted RBP22.48■■□□□ 1.19
TMEM39A-203ENST00000461654 RAB3GAP2Q9H2M9 1393 aa22.48■■□□□ 1.19
TMEM39A-203ENST00000461654 DEPDC5O75140 1603 aa22.47■■□□□ 1.19
TMEM39A-203ENST00000461654 CCER1Q8TC90 406 aaPredicted RBP22.46■■□□□ 1.19
TMEM39A-203ENST00000461654 NAIPQ13075 1403 aa22.46■■□□□ 1.19
TMEM39A-203ENST00000461654 ACIN1Q9UKV3 1341 aaKnown RBP22.45■■□□□ 1.18
TMEM39A-203ENST00000461654 ERVK-7P63135 1459 aa22.45■■□□□ 1.18
TMEM39A-203ENST00000461654 KANK1Q14678 1352 aa22.44■■□□□ 1.18
TMEM39A-203ENST00000461654 LTBP4Q8N2S1 1624 aa22.44■■□□□ 1.18
TMEM39A-203ENST00000461654 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.42■■□□□ 1.18
TMEM39A-203ENST00000461654 CEP152O94986 1710 aa22.42■■□□□ 1.18
TMEM39A-203ENST00000461654 UGGT1Q9NYU2 1555 aa22.42■■□□□ 1.18
TMEM39A-203ENST00000461654 LMTK2Q8IWU2 1503 aa22.41■■□□□ 1.18
TMEM39A-203ENST00000461654 ANKLE2Q86XL3 938 aa22.41■■□□□ 1.18
TMEM39A-203ENST00000461654 GCC2Q8IWJ2 1684 aa22.41■■□□□ 1.18
TMEM39A-203ENST00000461654 VWDEQ8N2E2 1590 aa22.41■■□□□ 1.18
TMEM39A-203ENST00000461654 ANKRD50Q9ULJ7 1429 aa22.4■■□□□ 1.18
TMEM39A-203ENST00000461654 IQSEC2Q5JU85 1478 aa22.38■■□□□ 1.17
TMEM39A-203ENST00000461654 MED14O60244 1454 aa22.35■■□□□ 1.17
TMEM39A-203ENST00000461654 ZNF335Q9H4Z2 1342 aaPredicted RBP22.35■■□□□ 1.17
TMEM39A-203ENST00000461654 NEURL4Q96JN8 1562 aa22.35■■□□□ 1.17
TMEM39A-203ENST00000461654 POLR1AO95602 1720 aaPredicted RBP22.33■■□□□ 1.17
TMEM39A-203ENST00000461654 TRIM52Q96A61 297 aa22.31■■□□□ 1.16
TMEM39A-203ENST00000461654 ZEB1P37275 1124 aaPredicted RBP22.3■■□□□ 1.16
TMEM39A-203ENST00000461654 DHX57Q6P158 1386 aaKnown RBP22.29■■□□□ 1.16
TMEM39A-203ENST00000461654 NPHP4O75161 1426 aaPredicted RBP22.29■■□□□ 1.16
TMEM39A-203ENST00000461654 NOS1P29475 1434 aa22.29■■□□□ 1.16
TMEM39A-203ENST00000461654 CFAP65Q6ZU64 1925 aaKnown RBP22.29■■□□□ 1.16
TMEM39A-203ENST00000461654 UBR1Q8IWV7 1749 aa22.28■■□□□ 1.16
TMEM39A-203ENST00000461654 EFCAB6Q5THR3 1501 aa22.28■■□□□ 1.16
TMEM39A-203ENST00000461654 RPRD2Q5VT52 1461 aaKnown RBP22.28■■□□□ 1.16
TMEM39A-203ENST00000461654 ARHGAP23Q9P227 1491 aa22.27■■□□□ 1.16
TMEM39A-203ENST00000461654 IDI1Q13907 227 aa22.26■■□□□ 1.15
TMEM39A-203ENST00000461654 SLIT1O75093 1534 aa22.26■■□□□ 1.15
TMEM39A-203ENST00000461654 SLC52A1Q9NWF4 448 aa22.25■■□□□ 1.15
TMEM39A-203ENST00000461654 CLSPNQ9HAW4 1339 aa22.25■■□□□ 1.15
TMEM39A-203ENST00000461654 UNC13BO14795 1591 aa22.24■■□□□ 1.15
TMEM39A-203ENST00000461654 KDM5AP29375 1690 aaKnown RBP22.23■■□□□ 1.15
TMEM39A-203ENST00000461654 CPS1P31327 1500 aa22.22■■□□□ 1.15
TMEM39A-203ENST00000461654 LTKP29376 864 aa22.22■■□□□ 1.15
TMEM39A-203ENST00000461654 TXNDC2Q86VQ3 553 aa22.22■■□□□ 1.15
TMEM39A-203ENST00000461654 TMEM2Q9UHN6 1383 aa22.22■■□□□ 1.15
TMEM39A-203ENST00000461654 SCAF11Q99590 1463 aaKnown RBP22.22■■□□□ 1.15
TMEM39A-203ENST00000461654 SYNMO15061 1565 aa22.21■■□□□ 1.15
TMEM39A-203ENST00000461654 PIK3C2BO00750 1634 aa22.21■■□□□ 1.15
TMEM39A-203ENST00000461654 IQGAP1P46940 1657 aa22.21■■□□□ 1.15
TMEM39A-203ENST00000461654 TET3O43151 1660 aa22.2■■□□□ 1.15
TMEM39A-203ENST00000461654 STAG3Q9UJ98 1225 aa22.2■■□□□ 1.14
TMEM39A-203ENST00000461654 EID1Q9Y6B2 187 aa22.2■■□□□ 1.14
TMEM39A-203ENST00000461654 NUP155O75694 1391 aa22.15■■□□□ 1.14
TMEM39A-203ENST00000461654 MPHOSPH9Q99550 1183 aa22.15■■□□□ 1.14
TMEM39A-203ENST00000461654 IQGAP3Q86VI3 1631 aa22.15■■□□□ 1.14
TMEM39A-203ENST00000461654 SLC4A1APQ9BWU0 796 aaKnown RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms