RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 RNF17Q9BXT8 1623 aaKnown RBP42.6■■■■■ 4.41
SMARCC1-203ENST00000454240 CNTLNQ9NXG0 1405 aa42.56■■■■■ 4.4
SMARCC1-203ENST00000454240 ESF1Q9H501 851 aaKnown RBP42.56■■■■■ 4.4
SMARCC1-203ENST00000454240 CLTCQ00610 1675 aaKnown RBP42.54■■■■■ 4.4
SMARCC1-203ENST00000454240 MROH2AA6NES4 1674 aa42.52■■■■■ 4.4
SMARCC1-203ENST00000454240 MROH1Q8NDA8 1641 aa42.49■■■■■ 4.39
SMARCC1-203ENST00000454240 FAM135AQ9P2D6 1515 aa42.49■■■■■ 4.39
SMARCC1-203ENST00000454240 C3P01024 1663 aa42.48■■■■■ 4.39
SMARCC1-203ENST00000454240 ANKRD50Q9ULJ7 1429 aa42.47■■■■■ 4.39
SMARCC1-203ENST00000454240 DEPDC5O75140 1603 aa42.46■■■■■ 4.39
SMARCC1-203ENST00000454240 KDM5DQ9BY66 1539 aa42.43■■■■■ 4.38
SMARCC1-203ENST00000454240 CEBPAP49715 358 aaPredicted RBP42.43■■■■■ 4.38
SMARCC1-203ENST00000454240 ZMYM3Q14202 1370 aa42.41■■■■■ 4.38
SMARCC1-203ENST00000454240 PRDM15P57071 1507 aaPredicted RBP42.41■■■■■ 4.38
SMARCC1-203ENST00000454240 PLPPR3Q6T4P5 718 aa42.4■■■■■ 4.38
SMARCC1-203ENST00000454240 WASHC2CQ9Y4E1 1318 aa42.4■■■■■ 4.38
SMARCC1-203ENST00000454240 ZC3H13Q5T200 1668 aaKnown RBP42.38■■■■■ 4.37
SMARCC1-203ENST00000454240 ABCC3O15438 1527 aa42.35■■■■■ 4.37
SMARCC1-203ENST00000454240 CEP152O94986 1710 aa42.32■■■■■ 4.36
SMARCC1-203ENST00000454240 GCC2Q8IWJ2 1684 aa42.3■■■■■ 4.36
SMARCC1-203ENST00000454240 SETD1BQ9UPS6 1966 aaKnown RBP42.3■■■■■ 4.36
SMARCC1-203ENST00000454240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP42.29■■■■■ 4.364e-8■■■■□ 22.8
SMARCC1-203ENST00000454240 NAIPQ13075 1403 aa42.29■■■■■ 4.36
SMARCC1-203ENST00000454240 VWDEQ8N2E2 1590 aa42.28■■■■■ 4.36
SMARCC1-203ENST00000454240 KANK1Q14678 1352 aa42.26■■■■■ 4.35
SMARCC1-203ENST00000454240 HFM1A2PYH4 1435 aa42.25■■■■■ 4.35
SMARCC1-203ENST00000454240 UNC13BO14795 1591 aa42.25■■■■■ 4.35
SMARCC1-203ENST00000454240 NPATQ14207 1427 aa42.22■■■■■ 4.35
SMARCC1-203ENST00000454240 CAMSAP1Q5T5Y3 1602 aa42.22■■■■■ 4.35
SMARCC1-203ENST00000454240 PZPP20742 1482 aa42.21■■■■■ 4.35
SMARCC1-203ENST00000454240 LMTK2Q8IWU2 1503 aa42.19■■■■■ 4.34
SMARCC1-203ENST00000454240 PREX1Q8TCU6 1659 aa42.18■■■■■ 4.34
SMARCC1-203ENST00000454240 ARHGAP31Q2M1Z3 1444 aa42.12■■■■■ 4.33
SMARCC1-203ENST00000454240 LMTK3Q96Q04 1460 aa42.11■■■■■ 4.33
SMARCC1-203ENST00000454240 FBXO31Q5XUX0 539 aaPredicted RBP42.11■■■■■ 4.33
SMARCC1-203ENST00000454240 CFAP65Q6ZU64 1925 aaKnown RBP42.09■■■■■ 4.33
SMARCC1-203ENST00000454240 IQGAP3Q86VI3 1631 aa42.08■■■■■ 4.33
SMARCC1-203ENST00000454240 UHRF1BP1Q6BDS2 1440 aa42.05■■■■■ 4.32
SMARCC1-203ENST00000454240 TET3O43151 1660 aa42.05■■■■■ 4.32
SMARCC1-203ENST00000454240 EFCAB6Q5THR3 1501 aa42.05■■■■■ 4.32
SMARCC1-203ENST00000454240 NUP155O75694 1391 aa42.04■■■■■ 4.32
SMARCC1-203ENST00000454240 SPATA31D1Q6ZQQ2 1576 aa42.02■■■■■ 4.32
SMARCC1-203ENST00000454240 ERVK-7P63135 1459 aa42■■■■■ 4.31
SMARCC1-203ENST00000454240 MYO3AQ8NEV4 1616 aa42■■■■■ 4.31
SMARCC1-203ENST00000454240 TNRQ92752 1358 aa42■■■■■ 4.31
SMARCC1-203ENST00000454240 SETD5Q9C0A6 1442 aa41.94■■■■■ 4.3
SMARCC1-203ENST00000454240 ZNF142P52746 1687 aaPredicted RBP41.93■■■■■ 4.3
SMARCC1-203ENST00000454240 RPRD2Q5VT52 1461 aaKnown RBP41.92■■■■■ 4.3
SMARCC1-203ENST00000454240 E9PCH4 1651 aa41.9■■■■■ 4.3
SMARCC1-203ENST00000454240 CEP170BQ9Y4F5 1589 aaPredicted RBP41.88■■■■■ 4.3
SMARCC1-203ENST00000454240 HSPA2P54652 639 aa41.88■■■■■ 4.29
SMARCC1-203ENST00000454240 NLRP1Q9C000 1473 aa41.86■■■■■ 4.29
SMARCC1-203ENST00000454240 A2ML1A8K2U0 1454 aa41.85■■■■■ 4.29
SMARCC1-203ENST00000454240 TRIM52Q96A61 297 aa41.85■■■■■ 4.29
SMARCC1-203ENST00000454240 NOS1P29475 1434 aa41.85■■■■■ 4.29
SMARCC1-203ENST00000454240 SYNMO15061 1565 aa41.8■■■■■ 4.28
SMARCC1-203ENST00000454240 RAB3GAP2Q9H2M9 1393 aa41.78■■■■■ 4.28
SMARCC1-203ENST00000454240 ACIN1Q9UKV3 1341 aaKnown RBP41.78■■■■■ 4.28
SMARCC1-203ENST00000454240 UGGT1Q9NYU2 1555 aa41.71■■■■■ 4.27
SMARCC1-203ENST00000454240 SLC4A1APQ9BWU0 796 aaKnown RBP41.69■■■■■ 4.26
SMARCC1-203ENST00000454240 STRCQ7RTU9 1775 aa41.68■■■■■ 4.26
SMARCC1-203ENST00000454240 HRCP23327 699 aa41.68■■■■■ 4.26
SMARCC1-203ENST00000454240 UBR1Q8IWV7 1749 aa41.67■■■■■ 4.26
SMARCC1-203ENST00000454240 IDI1Q13907 227 aa41.67■■■■■ 4.26
SMARCC1-203ENST00000454240 SLC52A1Q9NWF4 448 aa41.67■■■■■ 4.26
SMARCC1-203ENST00000454240 PIK3C2BO00750 1634 aa41.66■■■■■ 4.26
SMARCC1-203ENST00000454240 SPHKAPQ2M3C7 1700 aa41.66■■■■■ 4.26
SMARCC1-203ENST00000454240 TRIM26Q12899 539 aaPredicted RBP41.65■■■■■ 4.26
SMARCC1-203ENST00000454240 PKD2Q13563 968 aa41.64■■■■■ 4.26
SMARCC1-203ENST00000454240 PTPRTO14522 1441 aa41.63■■■■■ 4.26
SMARCC1-203ENST00000454240 THEMISQ8N1K5 641 aaPredicted RBP41.63■■■■■ 4.25
SMARCC1-203ENST00000454240 PLA2R1Q13018 1463 aa41.63■■■■■ 4.25
SMARCC1-203ENST00000454240 KDM5AP29375 1690 aaKnown RBP41.61■■■■■ 4.25
SMARCC1-203ENST00000454240 MPHOSPH9Q99550 1183 aa41.61■■■■■ 4.25
SMARCC1-203ENST00000454240 ADGRB3O60242 1522 aa41.52■■■■■ 4.24
SMARCC1-203ENST00000454240 TRPM2O94759 1503 aa41.51■■■■■ 4.24
SMARCC1-203ENST00000454240 STAG3Q9UJ98 1225 aa41.49■■■■■ 4.23
SMARCC1-203ENST00000454240 MYO5BQ9ULV0 1848 aa41.48■■■■■ 4.23
SMARCC1-203ENST00000454240 NCKAP5LQ9HCH0 1330 aa41.48■■■■■ 4.23
SMARCC1-203ENST00000454240 POLR1AO95602 1720 aaPredicted RBP41.48■■■■■ 4.23
SMARCC1-203ENST00000454240 TMEM131LA2VDJ0 1609 aa41.47■■■■■ 4.23
SMARCC1-203ENST00000454240 FOXD1Q16676 465 aa41.46■■■■■ 4.23
SMARCC1-203ENST00000454240 SLIT1O75093 1534 aa41.45■■■■■ 4.23
SMARCC1-203ENST00000454240 DMRT2Q9Y5R5 561 aa41.45■■■■■ 4.23
SMARCC1-203ENST00000454240 ARHGAP23Q9P227 1491 aa41.45■■■■■ 4.23
SMARCC1-203ENST00000454240 CLTCL1P53675 1640 aa41.44■■■■■ 4.22
SMARCC1-203ENST00000454240 ANKLE2Q86XL3 938 aa41.43■■■■■ 4.22
SMARCC1-203ENST00000454240 TMEM2Q9UHN6 1383 aa41.4■■■■■ 4.22
SMARCC1-203ENST00000454240 NEURL4Q96JN8 1562 aa41.39■■■■■ 4.22
SMARCC1-203ENST00000454240 CHGAP10645 457 aaKnown RBP41.35■■■■■ 4.21
SMARCC1-203ENST00000454240 KIF1BO60333 1816 aa41.34■■■■■ 4.21
SMARCC1-203ENST00000454240 MED14O60244 1454 aa41.34■■■■■ 4.21
SMARCC1-203ENST00000454240 LTKP29376 864 aa41.32■■■■■ 4.21
SMARCC1-203ENST00000454240 SCAF11Q99590 1463 aaKnown RBP41.31■■■■■ 4.2
SMARCC1-203ENST00000454240 TXNDC2Q86VQ3 553 aa41.3■■■■■ 4.2
SMARCC1-203ENST00000454240 EID1Q9Y6B2 187 aa41.29■■■■■ 4.2
SMARCC1-203ENST00000454240 ZFYVE9O95405 1425 aa41.27■■■■■ 4.2
SMARCC1-203ENST00000454240 NPHP4O75161 1426 aaPredicted RBP41.26■■■■■ 4.19
SMARCC1-203ENST00000454240 IQGAP1P46940 1657 aa41.24■■■■■ 4.19
SMARCC1-203ENST00000454240 CCDC144AA2RUR9 1427 aa41.24■■■■■ 4.19
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms