RNA–Protein interactions for RNA: ENST00000446876.1

HDAC4-204, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-204ENST00000446876 ZMYM3Q14202 1370 aa22.81■■□□□ 1.24
HDAC4-204ENST00000446876 MROH1Q8NDA8 1641 aa22.81■■□□□ 1.24
HDAC4-204ENST00000446876 KDM5DQ9BY66 1539 aa22.81■■□□□ 1.24
HDAC4-204ENST00000446876 PTPRKQ15262 1439 aa22.81■■□□□ 1.24
HDAC4-204ENST00000446876 ADGRL2O95490 1459 aa22.8■■□□□ 1.24
HDAC4-204ENST00000446876 ANKRD30AQ9BXX3 1397 aa22.8■■□□□ 1.24
HDAC4-204ENST00000446876 NCOA1Q15788 1441 aa22.79■■□□□ 1.24
HDAC4-204ENST00000446876 ERBINQ96RT1 1412 aa22.78■■□□□ 1.24
HDAC4-204ENST00000446876 PPP6R1Q9UPN7 881 aa22.77■■□□□ 1.24
HDAC4-204ENST00000446876 SETD1BQ9UPS6 1966 aaKnown RBP22.77■■□□□ 1.24
HDAC4-204ENST00000446876 CEP152O94986 1710 aa22.77■■□□□ 1.23
HDAC4-204ENST00000446876 HSPA2P54652 639 aa22.76■■□□□ 1.23
HDAC4-204ENST00000446876 FAM135AQ9P2D6 1515 aa22.76■■□□□ 1.23
HDAC4-204ENST00000446876 ITGAEP38570 1179 aa22.75■■□□□ 1.23
HDAC4-204ENST00000446876 RRBP1Q9P2E9 1410 aaKnown RBP22.74■■□□□ 1.23
HDAC4-204ENST00000446876 ABCC3O15438 1527 aa22.74■■□□□ 1.23
HDAC4-204ENST00000446876 WASHC2CQ9Y4E1 1318 aa22.74■■□□□ 1.23
HDAC4-204ENST00000446876 ZC3H13Q5T200 1668 aaKnown RBP22.74■■□□□ 1.23
HDAC4-204ENST00000446876 DEPDC5O75140 1603 aa22.73■■□□□ 1.23
HDAC4-204ENST00000446876 UHRF1BP1Q6BDS2 1440 aa22.73■■□□□ 1.23
HDAC4-204ENST00000446876 PRDM15P57071 1507 aaPredicted RBP22.72■■□□□ 1.23
HDAC4-204ENST00000446876 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.72■■□□□ 1.23
HDAC4-204ENST00000446876 NPATQ14207 1427 aa22.72■■□□□ 1.23
HDAC4-204ENST00000446876 MYO3AQ8NEV4 1616 aa22.7■■□□□ 1.22
HDAC4-204ENST00000446876 CAMSAP1Q5T5Y3 1602 aa22.69■■□□□ 1.22
HDAC4-204ENST00000446876 PZPP20742 1482 aa22.68■■□□□ 1.22
HDAC4-204ENST00000446876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.67■■□□□ 1.229e-7■■□□□ 12.4
HDAC4-204ENST00000446876 ANKRD50Q9ULJ7 1429 aa22.66■■□□□ 1.22
HDAC4-204ENST00000446876 FBXO31Q5XUX0 539 aaPredicted RBP22.66■■□□□ 1.22
HDAC4-204ENST00000446876 ROCK1Q13464 1354 aa22.65■■□□□ 1.22
HDAC4-204ENST00000446876 CFAP65Q6ZU64 1925 aaKnown RBP22.65■■□□□ 1.22
HDAC4-204ENST00000446876 ZNF142P52746 1687 aaPredicted RBP22.64■■□□□ 1.21
HDAC4-204ENST00000446876 VWDEQ8N2E2 1590 aa22.62■■□□□ 1.21
HDAC4-204ENST00000446876 CEP170BQ9Y4F5 1589 aaPredicted RBP22.62■■□□□ 1.21
HDAC4-204ENST00000446876 TNRQ92752 1358 aa22.61■■□□□ 1.21
HDAC4-204ENST00000446876 STRCQ7RTU9 1775 aa22.6■■□□□ 1.21
HDAC4-204ENST00000446876 KANK1Q14678 1352 aa22.59■■□□□ 1.21
HDAC4-204ENST00000446876 UNC13BO14795 1591 aa22.59■■□□□ 1.21
HDAC4-204ENST00000446876 SPATA31D1Q6ZQQ2 1576 aa22.58■■□□□ 1.2
HDAC4-204ENST00000446876 ERVK-7P63135 1459 aa22.57■■□□□ 1.2
HDAC4-204ENST00000446876 LMTK2Q8IWU2 1503 aa22.56■■□□□ 1.2
HDAC4-204ENST00000446876 A2ML1A8K2U0 1454 aa22.55■■□□□ 1.2
HDAC4-204ENST00000446876 GCC2Q8IWJ2 1684 aa22.54■■□□□ 1.2
HDAC4-204ENST00000446876 EFCAB6Q5THR3 1501 aa22.53■■□□□ 1.2
HDAC4-204ENST00000446876 ARHGAP31Q2M1Z3 1444 aa22.53■■□□□ 1.2
HDAC4-204ENST00000446876 TET3O43151 1660 aa22.5■■□□□ 1.19
HDAC4-204ENST00000446876 NLRP1Q9C000 1473 aa22.49■■□□□ 1.19
HDAC4-204ENST00000446876 IQGAP3Q86VI3 1631 aa22.49■■□□□ 1.19
HDAC4-204ENST00000446876 NAIPQ13075 1403 aa22.48■■□□□ 1.19
HDAC4-204ENST00000446876 UGGT1Q9NYU2 1555 aa22.46■■□□□ 1.19
HDAC4-204ENST00000446876 PLA2R1Q13018 1463 aa22.45■■□□□ 1.18
HDAC4-204ENST00000446876 SYNMO15061 1565 aa22.45■■□□□ 1.18
HDAC4-204ENST00000446876 E9PCH4 1651 aa22.44■■□□□ 1.18
HDAC4-204ENST00000446876 NCKAP5LQ9HCH0 1330 aa22.44■■□□□ 1.18
HDAC4-204ENST00000446876 UBR1Q8IWV7 1749 aa22.43■■□□□ 1.18
HDAC4-204ENST00000446876 HFM1A2PYH4 1435 aa22.43■■□□□ 1.18
HDAC4-204ENST00000446876 NUP155O75694 1391 aa22.43■■□□□ 1.18
HDAC4-204ENST00000446876 POLR1AO95602 1720 aaPredicted RBP22.42■■□□□ 1.18
HDAC4-204ENST00000446876 PIK3C2BO00750 1634 aa22.42■■□□□ 1.18
HDAC4-204ENST00000446876 NOS1P29475 1434 aa22.4■■□□□ 1.18
HDAC4-204ENST00000446876 RPRD2Q5VT52 1461 aaKnown RBP22.4■■□□□ 1.18
HDAC4-204ENST00000446876 PTPRTO14522 1441 aa22.38■■□□□ 1.17
HDAC4-204ENST00000446876 NEURL4Q96JN8 1562 aa22.37■■□□□ 1.17
HDAC4-204ENST00000446876 DMRT2Q9Y5R5 561 aa22.36■■□□□ 1.17
HDAC4-204ENST00000446876 THEMISQ8N1K5 641 aaPredicted RBP22.35■■□□□ 1.17
HDAC4-204ENST00000446876 PKD2Q13563 968 aa22.34■■□□□ 1.17
HDAC4-204ENST00000446876 IDI1Q13907 227 aa22.33■■□□□ 1.17
HDAC4-204ENST00000446876 MYO5BQ9ULV0 1848 aa22.32■■□□□ 1.16
HDAC4-204ENST00000446876 ADGRB3O60242 1522 aa22.31■■□□□ 1.16
HDAC4-204ENST00000446876 KDM5AP29375 1690 aaKnown RBP22.3■■□□□ 1.16
HDAC4-204ENST00000446876 SPHKAPQ2M3C7 1700 aa22.3■■□□□ 1.16
HDAC4-204ENST00000446876 TRIM52Q96A61 297 aa22.29■■□□□ 1.16
HDAC4-204ENST00000446876 ANKLE2Q86XL3 938 aa22.28■■□□□ 1.16
HDAC4-204ENST00000446876 STAG3Q9UJ98 1225 aa22.28■■□□□ 1.16
HDAC4-204ENST00000446876 ARHGAP23Q9P227 1491 aa22.28■■□□□ 1.16
HDAC4-204ENST00000446876 SLIT1O75093 1534 aa22.27■■□□□ 1.16
HDAC4-204ENST00000446876 IQGAP1P46940 1657 aa22.26■■□□□ 1.15
HDAC4-204ENST00000446876 SLC52A1Q9NWF4 448 aa22.26■■□□□ 1.15
HDAC4-204ENST00000446876 NPHP4O75161 1426 aaPredicted RBP22.25■■□□□ 1.15
HDAC4-204ENST00000446876 TMEM131LA2VDJ0 1609 aa22.24■■□□□ 1.15
HDAC4-204ENST00000446876 MED14O60244 1454 aa22.24■■□□□ 1.15
HDAC4-204ENST00000446876 SCAF11Q99590 1463 aaKnown RBP22.24■■□□□ 1.15
HDAC4-204ENST00000446876 LTBP4Q8N2S1 1624 aa22.24■■□□□ 1.15
HDAC4-204ENST00000446876 TMEM2Q9UHN6 1383 aa22.23■■□□□ 1.15
HDAC4-204ENST00000446876 LTKP29376 864 aa22.22■■□□□ 1.15
HDAC4-204ENST00000446876 ZNF335Q9H4Z2 1342 aaPredicted RBP22.22■■□□□ 1.15
HDAC4-204ENST00000446876 SETD5Q9C0A6 1442 aa22.22■■□□□ 1.15
HDAC4-204ENST00000446876 TXNDC2Q86VQ3 553 aa22.2■■□□□ 1.14
HDAC4-204ENST00000446876 CHGAP10645 457 aaKnown RBP22.19■■□□□ 1.14
HDAC4-204ENST00000446876 CERKQ8TCT0 537 aa22.19■■□□□ 1.14
HDAC4-204ENST00000446876 SLC4A1APQ9BWU0 796 aaKnown RBP22.19■■□□□ 1.14
HDAC4-204ENST00000446876 CLTCL1P53675 1640 aa22.19■■□□□ 1.14
HDAC4-204ENST00000446876 TRPM2O94759 1503 aa22.18■■□□□ 1.14
HDAC4-204ENST00000446876 RAB3GAP2Q9H2M9 1393 aa22.17■■□□□ 1.14
HDAC4-204ENST00000446876 EID1Q9Y6B2 187 aa22.16■■□□□ 1.14
HDAC4-204ENST00000446876 ILDR1Q86SU0 546 aaPredicted RBP22.15■■□□□ 1.14
HDAC4-204ENST00000446876 ZFYVE9O95405 1425 aa22.14■■□□□ 1.14
HDAC4-204ENST00000446876 FOXD1Q16676 465 aa22.14■■□□□ 1.13
HDAC4-204ENST00000446876 RIMS2Q9UQ26 1411 aa22.14■■□□□ 1.13
HDAC4-204ENST00000446876 STRCP1A6NGW2 1772 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms