RNA–Protein interactions for RNA: ENST00000446764.5

GARNL3-209, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 523 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-209	ENST00000446764	ADGRL2	O95490	1459 aa		31.93	■■■□□ 2.7
GARNL3-209	ENST00000446764	C3	P01024	1663 aa		31.92	■■■□□ 2.7
GARNL3-209	ENST00000446764	ERBIN	Q96RT1	1412 aa		31.92	■■■□□ 2.7
GARNL3-209	ENST00000446764	WASHC2C	Q9Y4E1	1318 aa		31.91	■■■□□ 2.7
GARNL3-209	ENST00000446764	MROH2A	A6NES4	1674 aa		31.89	■■■□□ 2.7
GARNL3-209	ENST00000446764	CLTC	Q00610	1675 aa	Known RBP	31.89	■■■□□ 2.7
GARNL3-209	ENST00000446764	EIF2AK4	Q9P2K8	1649 aa	Known RBP	31.89	■■■□□ 2.7
GARNL3-209	ENST00000446764	RRBP1	Q9P2E9	1410 aa	Known RBP	31.88	■■■□□ 2.69
GARNL3-209	ENST00000446764	KDM5D	Q9BY66	1539 aa		31.86	■■■□□ 2.69
GARNL3-209	ENST00000446764	ITGAE	P38570	1179 aa		31.86	■■■□□ 2.69
GARNL3-209	ENST00000446764	RNF17	Q9BXT8	1623 aa	Known RBP	31.86	■■■□□ 2.69
GARNL3-209	ENST00000446764	FAM135A	Q9P2D6	1515 aa		31.85	■■■□□ 2.69
GARNL3-209	ENST00000446764	NPAT	Q14207	1427 aa		31.85	■■■□□ 2.69
GARNL3-209	ENST00000446764	HSPA2	P54652	639 aa		31.84	■■■□□ 2.69
GARNL3-209	ENST00000446764	UHRF1BP1	Q6BDS2	1440 aa		31.82	■■■□□ 2.68
GARNL3-209	ENST00000446764	ROCK1	Q13464	1354 aa		31.81	■■■□□ 2.68
GARNL3-209	ENST00000446764	MROH1	Q8NDA8	1641 aa		31.8	■■■□□ 2.68
GARNL3-209	ENST00000446764	ANKRD50	Q9ULJ7	1429 aa		31.77	■■■□□ 2.68
GARNL3-209	ENST00000446764	ABCC3	O15438	1527 aa		31.77	■■■□□ 2.68
GARNL3-209	ENST00000446764	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.77	■■■□□ 2.68
GARNL3-209	ENST00000446764	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.76	■■■□□ 2.67
GARNL3-209	ENST00000446764	PREX1	Q8TCU6	1659 aa		31.76	■■■□□ 2.67
GARNL3-209	ENST00000446764	PZP	P20742	1482 aa		31.74	■■■□□ 2.67
GARNL3-209	ENST00000446764	PRDM15	P57071	1507 aa	Predicted RBP	31.73	■■■□□ 2.67
GARNL3-209	ENST00000446764	KANK1	Q14678	1352 aa		31.69	■■■□□ 2.66
GARNL3-209	ENST00000446764	SETD1B	Q9UPS6	1966 aa	Known RBP	31.68	■■■□□ 2.66
GARNL3-209	ENST00000446764	DEPDC5	O75140	1603 aa		31.67	■■■□□ 2.66
GARNL3-209	ENST00000446764	ZC3H13	Q5T200	1668 aa	Known RBP	31.67	■■■□□ 2.66
GARNL3-209	ENST00000446764	TNR	Q92752	1358 aa		31.66	■■■□□ 2.66
GARNL3-209	ENST00000446764	VWDE	Q8N2E2	1590 aa		31.61	■■■□□ 2.65
GARNL3-209	ENST00000446764	ARHGAP31	Q2M1Z3	1444 aa		31.61	■■■□□ 2.65
GARNL3-209	ENST00000446764	LMTK2	Q8IWU2	1503 aa		31.59	■■■□□ 2.65
GARNL3-209	ENST00000446764	CEP152	O94986	1710 aa		31.59	■■■□□ 2.65
GARNL3-209	ENST00000446764	MYO3A	Q8NEV4	1616 aa		31.59	■■■□□ 2.65
GARNL3-209	ENST00000446764	CAMSAP1	Q5T5Y3	1602 aa		31.58	■■■□□ 2.65
GARNL3-209	ENST00000446764	ERVK-7	P63135	1459 aa		31.57	■■■□□ 2.64
GARNL3-209	ENST00000446764	SPATA31D1	Q6ZQQ2	1576 aa		31.55	■■■□□ 2.64
GARNL3-209	ENST00000446764	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.55	■■■□□ 2.64
GARNL3-209	ENST00000446764	A2ML1	A8K2U0	1454 aa		31.54	■■■□□ 2.64
GARNL3-209	ENST00000446764	NAIP	Q13075	1403 aa		31.51	■■■□□ 2.64
GARNL3-209	ENST00000446764	NLRP1	Q9C000	1473 aa		31.51	■■■□□ 2.63
GARNL3-209	ENST00000446764	ZNF142	P52746	1687 aa	Predicted RBP	31.5	■■■□□ 2.63
GARNL3-209	ENST00000446764	UNC13B	O14795	1591 aa		31.49	■■■□□ 2.63
GARNL3-209	ENST00000446764	NUP155	O75694	1391 aa		31.46	■■■□□ 2.63
GARNL3-209	ENST00000446764	EFCAB6	Q5THR3	1501 aa		31.46	■■■□□ 2.63
GARNL3-209	ENST00000446764	HFM1	A2PYH4	1435 aa		31.45	■■■□□ 2.63
GARNL3-209	ENST00000446764	DMRT2	Q9Y5R5	561 aa		31.45	■■■□□ 2.63
GARNL3-209	ENST00000446764	PLA2R1	Q13018	1463 aa		31.43	■■■□□ 2.62
GARNL3-209	ENST00000446764	NCKAP5L	Q9HCH0	1330 aa		31.43	■■■□□ 2.62
GARNL3-209	ENST00000446764	STRC	Q7RTU9	1775 aa		31.43	■■■□□ 2.62
GARNL3-209	ENST00000446764	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.42	■■■□□ 2.62
GARNL3-209	ENST00000446764	PKD2	Q13563	968 aa		31.4	■■■□□ 2.62
GARNL3-209	ENST00000446764	NOS1	P29475	1434 aa		31.4	■■■□□ 2.62
GARNL3-209	ENST00000446764	UGGT1	Q9NYU2	1555 aa		31.39	■■■□□ 2.62
GARNL3-209	ENST00000446764	RPRD2	Q5VT52	1461 aa	Known RBP	31.39	■■■□□ 2.62
GARNL3-209	ENST00000446764	PTPRT	O14522	1441 aa		31.38	■■■□□ 2.61
GARNL3-209	ENST00000446764	TET3	O43151	1660 aa		31.36	■■■□□ 2.61
GARNL3-209	ENST00000446764	IQGAP3	Q86VI3	1631 aa		31.36	■■■□□ 2.61
GARNL3-209	ENST00000446764	GCC2	Q8IWJ2	1684 aa		31.35	■■■□□ 2.61
GARNL3-209	ENST00000446764	IDI1	Q13907	227 aa		31.34	■■■□□ 2.61
GARNL3-209	ENST00000446764	SYNM	O15061	1565 aa		31.3	■■■□□ 2.6
GARNL3-209	ENST00000446764	ANKLE2	Q86XL3	938 aa		31.3	■■■□□ 2.6
GARNL3-209	ENST00000446764	SLC52A1	Q9NWF4	448 aa		31.3	■■■□□ 2.6
GARNL3-209	ENST00000446764	CFAP65	Q6ZU64	1925 aa	Known RBP	31.3	■■■□□ 2.6
GARNL3-209	ENST00000446764	TRIM52	Q96A61	297 aa		31.28	■■■□□ 2.6
GARNL3-209	ENST00000446764	STAG3	Q9UJ98	1225 aa		31.26	■■■□□ 2.59
GARNL3-209	ENST00000446764		E9PCH4	1651 aa		31.24	■■■□□ 2.59
GARNL3-209	ENST00000446764	PIK3C2B	O00750	1634 aa		31.22	■■■□□ 2.59
GARNL3-209	ENST00000446764	UBR1	Q8IWV7	1749 aa		31.21	■■■□□ 2.59
GARNL3-209	ENST00000446764	ARHGAP23	Q9P227	1491 aa		31.19	■■■□□ 2.58
GARNL3-209	ENST00000446764	NEURL4	Q96JN8	1562 aa		31.18	■■■□□ 2.58
GARNL3-209	ENST00000446764	TMEM2	Q9UHN6	1383 aa		31.17	■■■□□ 2.58
GARNL3-209	ENST00000446764	LTK	P29376	864 aa		31.17	■■■□□ 2.58
GARNL3-209	ENST00000446764	SLIT1	O75093	1534 aa		31.17	■■■□□ 2.58
GARNL3-209	ENST00000446764	SETD5	Q9C0A6	1442 aa		31.16	■■■□□ 2.58
GARNL3-209	ENST00000446764	MED14	O60244	1454 aa		31.16	■■■□□ 2.58
GARNL3-209	ENST00000446764	TXNDC2	Q86VQ3	553 aa		31.16	■■■□□ 2.58
GARNL3-209	ENST00000446764	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.16	■■■□□ 2.58
GARNL3-209	ENST00000446764	NPHP4	O75161	1426 aa	Predicted RBP	31.15	■■■□□ 2.58
GARNL3-209	ENST00000446764	ADGRB3	O60242	1522 aa		31.14	■■■□□ 2.57
GARNL3-209	ENST00000446764	EID1	Q9Y6B2	187 aa		31.13	■■■□□ 2.57
GARNL3-209	ENST00000446764	CERK	Q8TCT0	537 aa		31.12	■■■□□ 2.57
GARNL3-209	ENST00000446764	SCAF11	Q99590	1463 aa	Known RBP	31.12	■■■□□ 2.57
GARNL3-209	ENST00000446764	KDM5A	P29375	1690 aa	Known RBP	31.11	■■■□□ 2.57
GARNL3-209	ENST00000446764	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.11	■■■□□ 2.57
GARNL3-209	ENST00000446764	POLR1A	O95602	1720 aa	Predicted RBP	31.1	■■■□□ 2.57
GARNL3-209	ENST00000446764	CHGA	P10645	457 aa	Known RBP	31.1	■■■□□ 2.57
GARNL3-209	ENST00000446764	RAB3GAP2	Q9H2M9	1393 aa		31.06	■■■□□ 2.56
GARNL3-209	ENST00000446764	ACIN1	Q9UKV3	1341 aa	Known RBP	31.06	■■■□□ 2.56
GARNL3-209	ENST00000446764	LTBP4	Q8N2S1	1624 aa		31.06	■■■□□ 2.56
GARNL3-209	ENST00000446764	MPHOSPH9	Q99550	1183 aa		31.05	■■■□□ 2.56
GARNL3-209	ENST00000446764	TMEM131L	A2VDJ0	1609 aa		31.03	■■■□□ 2.56
GARNL3-209	ENST00000446764	FOXD1	Q16676	465 aa		31.01	■■■□□ 2.55
GARNL3-209	ENST00000446764	IQGAP1	P46940	1657 aa		31	■■■□□ 2.55
GARNL3-209	ENST00000446764	ZFYVE9	O95405	1425 aa		30.99	■■■□□ 2.55
GARNL3-209	ENST00000446764	RIMS2	Q9UQ26	1411 aa		30.99	■■■□□ 2.55
GARNL3-209	ENST00000446764	TRPM2	O94759	1503 aa		30.99	■■■□□ 2.55
GARNL3-209	ENST00000446764	SPHKAP	Q2M3C7	1700 aa		30.99	■■■□□ 2.55
GARNL3-209	ENST00000446764	HDGF	P51858	240 aa	Known RBP	30.98	■■■□□ 2.55
GARNL3-209	ENST00000446764	ILDR1	Q86SU0	546 aa	Predicted RBP	30.98	■■■□□ 2.55

Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms