RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 MROH1Q8NDA8 1641 aa24.37■■□□□ 1.49
USP39-205ENST00000442708 PTPRMP28827 1452 aa24.37■■□□□ 1.49
USP39-205ENST00000442708 CLTCQ00610 1675 aaKnown RBP24.34■■□□□ 1.49
USP39-205ENST00000442708 ANKRD50Q9ULJ7 1429 aa24.33■■□□□ 1.49
USP39-205ENST00000442708 DEPDC5O75140 1603 aa24.32■■□□□ 1.48
USP39-205ENST00000442708 MROH2AA6NES4 1674 aa24.29■■□□□ 1.48
USP39-205ENST00000442708 C3P01024 1663 aa24.29■■□□□ 1.48
USP39-205ENST00000442708 GCC2Q8IWJ2 1684 aa24.29■■□□□ 1.48
USP39-205ENST00000442708 PRDM15P57071 1507 aaPredicted RBP24.28■■□□□ 1.48
USP39-205ENST00000442708 NAIPQ13075 1403 aa24.27■■□□□ 1.48
USP39-205ENST00000442708 CEBPAP49715 358 aaPredicted RBP24.27■■□□□ 1.48
USP39-205ENST00000442708 CEP152O94986 1710 aa24.27■■□□□ 1.48
USP39-205ENST00000442708 CNTLNQ9NXG0 1405 aa24.27■■□□□ 1.48
USP39-205ENST00000442708 KDM5DQ9BY66 1539 aa24.26■■□□□ 1.47
USP39-205ENST00000442708 PPP6R1Q9UPN7 881 aa24.26■■□□□ 1.47
USP39-205ENST00000442708 PLPPR3Q6T4P5 718 aa24.25■■□□□ 1.47
USP39-205ENST00000442708 ABCC3O15438 1527 aa24.25■■□□□ 1.47
USP39-205ENST00000442708 ESF1Q9H501 851 aaKnown RBP24.24■■□□□ 1.47
USP39-205ENST00000442708 HFM1A2PYH4 1435 aa24.24■■□□□ 1.47
USP39-205ENST00000442708 FAM135AQ9P2D6 1515 aa24.24■■□□□ 1.47
USP39-205ENST00000442708 VWDEQ8N2E2 1590 aa24.23■■□□□ 1.47
USP39-205ENST00000442708 ZC3H13Q5T200 1668 aaKnown RBP24.22■■□□□ 1.47
USP39-205ENST00000442708 UNC13BO14795 1591 aa24.22■■□□□ 1.47
USP39-205ENST00000442708 ZMYM3Q14202 1370 aa24.22■■□□□ 1.47
USP39-205ENST00000442708 WASHC2CQ9Y4E1 1318 aa24.22■■□□□ 1.47
USP39-205ENST00000442708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.22■■□□□ 1.473e-6■□□□□ 9.9
USP39-205ENST00000442708 CAMSAP1Q5T5Y3 1602 aa24.18■■□□□ 1.46
USP39-205ENST00000442708 LMTK2Q8IWU2 1503 aa24.15■■□□□ 1.46
USP39-205ENST00000442708 KANK1Q14678 1352 aa24.14■■□□□ 1.45
USP39-205ENST00000442708 PZPP20742 1482 aa24.13■■□□□ 1.45
USP39-205ENST00000442708 IQGAP3Q86VI3 1631 aa24.12■■□□□ 1.45
USP39-205ENST00000442708 CFAP65Q6ZU64 1925 aaKnown RBP24.12■■□□□ 1.45
USP39-205ENST00000442708 FBXO31Q5XUX0 539 aaPredicted RBP24.11■■□□□ 1.45
USP39-205ENST00000442708 NPATQ14207 1427 aa24.09■■□□□ 1.45
USP39-205ENST00000442708 TET3O43151 1660 aa24.08■■□□□ 1.45
USP39-205ENST00000442708 NUP155O75694 1391 aa24.08■■□□□ 1.45
USP39-205ENST00000442708 EFCAB6Q5THR3 1501 aa24.08■■□□□ 1.45
USP39-205ENST00000442708 SETD1BQ9UPS6 1966 aaKnown RBP24.07■■□□□ 1.44
USP39-205ENST00000442708 PREX1Q8TCU6 1659 aa24.07■■□□□ 1.44
USP39-205ENST00000442708 ARHGAP31Q2M1Z3 1444 aa24.07■■□□□ 1.44
USP39-205ENST00000442708 SETD5Q9C0A6 1442 aa24.07■■□□□ 1.44
USP39-205ENST00000442708 LMTK3Q96Q04 1460 aa24.04■■□□□ 1.44
USP39-205ENST00000442708 E9PCH4 1651 aa24.04■■□□□ 1.44
USP39-205ENST00000442708 SPATA31D1Q6ZQQ2 1576 aa24.03■■□□□ 1.44
USP39-205ENST00000442708 ERVK-7P63135 1459 aa24.03■■□□□ 1.44
USP39-205ENST00000442708 MYO3AQ8NEV4 1616 aa24.02■■□□□ 1.44
USP39-205ENST00000442708 RAB3GAP2Q9H2M9 1393 aa24.02■■□□□ 1.44
USP39-205ENST00000442708 TNRQ92752 1358 aa24■■□□□ 1.43
USP39-205ENST00000442708 FBXO41Q8TF61 875 aa23.99■■□□□ 1.43
USP39-205ENST00000442708 TRIM52Q96A61 297 aa23.99■■□□□ 1.43
USP39-205ENST00000442708 TRIM26Q12899 539 aaPredicted RBP23.97■■□□□ 1.43
USP39-205ENST00000442708 UHRF1BP1Q6BDS2 1440 aa23.97■■□□□ 1.43
USP39-205ENST00000442708 ZNF142P52746 1687 aaPredicted RBP23.96■■□□□ 1.43
USP39-205ENST00000442708 SYNMO15061 1565 aa23.96■■□□□ 1.43
USP39-205ENST00000442708 RPRD2Q5VT52 1461 aaKnown RBP23.95■■□□□ 1.42
USP39-205ENST00000442708 NOS1P29475 1434 aa23.94■■□□□ 1.42
USP39-205ENST00000442708 CEP170BQ9Y4F5 1589 aaPredicted RBP23.93■■□□□ 1.42
USP39-205ENST00000442708 HSPA2P54652 639 aa23.92■■□□□ 1.42
USP39-205ENST00000442708 A2ML1A8K2U0 1454 aa23.9■■□□□ 1.42
USP39-205ENST00000442708 NLRP1Q9C000 1473 aa23.89■■□□□ 1.42
USP39-205ENST00000442708 SLC4A1APQ9BWU0 796 aaKnown RBP23.88■■□□□ 1.41
USP39-205ENST00000442708 SPHKAPQ2M3C7 1700 aa23.87■■□□□ 1.41
USP39-205ENST00000442708 PKD2Q13563 968 aa23.87■■□□□ 1.41
USP39-205ENST00000442708 UGGT1Q9NYU2 1555 aa23.86■■□□□ 1.41
USP39-205ENST00000442708 PIK3C2BO00750 1634 aa23.86■■□□□ 1.41
USP39-205ENST00000442708 HRCP23327 699 aa23.86■■□□□ 1.41
USP39-205ENST00000442708 MPHOSPH9Q99550 1183 aa23.86■■□□□ 1.41
USP39-205ENST00000442708 PTPRTO14522 1441 aa23.84■■□□□ 1.41
USP39-205ENST00000442708 UBR1Q8IWV7 1749 aa23.84■■□□□ 1.41
USP39-205ENST00000442708 IDI1Q13907 227 aa23.84■■□□□ 1.41
USP39-205ENST00000442708 FOXD1Q16676 465 aa23.84■■□□□ 1.41
USP39-205ENST00000442708 PLA2R1Q13018 1463 aa23.83■■□□□ 1.41
USP39-205ENST00000442708 STRCQ7RTU9 1775 aa23.82■■□□□ 1.4
USP39-205ENST00000442708 ACIN1Q9UKV3 1341 aaKnown RBP23.81■■□□□ 1.4
USP39-205ENST00000442708 MYO5BQ9ULV0 1848 aa23.8■■□□□ 1.4
USP39-205ENST00000442708 TRPM2O94759 1503 aa23.79■■□□□ 1.4
USP39-205ENST00000442708 SLC52A1Q9NWF4 448 aa23.78■■□□□ 1.4
USP39-205ENST00000442708 CLTCL1P53675 1640 aa23.77■■□□□ 1.4
USP39-205ENST00000442708 KDM5AP29375 1690 aaKnown RBP23.77■■□□□ 1.4
USP39-205ENST00000442708 ADGRB3O60242 1522 aa23.76■■□□□ 1.39
USP39-205ENST00000442708 TMEM131LA2VDJ0 1609 aa23.76■■□□□ 1.39
USP39-205ENST00000442708 THEMISQ8N1K5 641 aaPredicted RBP23.73■■□□□ 1.39
USP39-205ENST00000442708 NCKAP5LQ9HCH0 1330 aa23.71■■□□□ 1.39
USP39-205ENST00000442708 PCGF6Q9BYE7 350 aa23.7■■□□□ 1.38
USP39-205ENST00000442708 POLR1AO95602 1720 aaPredicted RBP23.7■■□□□ 1.38
USP39-205ENST00000442708 ARHGAP23Q9P227 1491 aa23.69■■□□□ 1.38
USP39-205ENST00000442708 SLIT1O75093 1534 aa23.69■■□□□ 1.38
USP39-205ENST00000442708 STAG3Q9UJ98 1225 aa23.68■■□□□ 1.38
USP39-205ENST00000442708 NEURL4Q96JN8 1562 aa23.68■■□□□ 1.38
USP39-205ENST00000442708 KIF1BO60333 1816 aa23.67■■□□□ 1.38
USP39-205ENST00000442708 TMEM2Q9UHN6 1383 aa23.66■■□□□ 1.38
USP39-205ENST00000442708 CHGAP10645 457 aaKnown RBP23.66■■□□□ 1.38
USP39-205ENST00000442708 LTKP29376 864 aa23.64■■□□□ 1.37
USP39-205ENST00000442708 ANKRD30BQ9BXX2 1392 aa23.64■■□□□ 1.37
USP39-205ENST00000442708 ZFYVE9O95405 1425 aa23.62■■□□□ 1.37
USP39-205ENST00000442708 ANKLE2Q86XL3 938 aa23.62■■□□□ 1.37
USP39-205ENST00000442708 CCDC144AA2RUR9 1427 aa23.61■■□□□ 1.37
USP39-205ENST00000442708 SCAF11Q99590 1463 aaKnown RBP23.61■■□□□ 1.37
USP39-205ENST00000442708 RIMS2Q9UQ26 1411 aa23.59■■□□□ 1.37
USP39-205ENST00000442708 TXNDC2Q86VQ3 553 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 118.3 ms