RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 ANKRD30BQ9BXX2 1392 aa11.64□□□□□ -0.55
CCDC39-201ENST00000442201 TONSLQ96HA7 1378 aa11.64□□□□□ -0.55
CCDC39-201ENST00000442201 UNC13BO14795 1591 aa11.63□□□□□ -0.55
CCDC39-201ENST00000442201 HECW2Q9P2P5 1572 aa11.63□□□□□ -0.55
CCDC39-201ENST00000442201 KIDINS220Q9ULH0 1771 aa11.62□□□□□ -0.55
CCDC39-201ENST00000442201 KIF3BO15066 747 aa11.62□□□□□ -0.55
CCDC39-201ENST00000442201 A2MP01023 1474 aa11.62□□□□□ -0.55
CCDC39-201ENST00000442201 FAM135AQ9P2D6 1515 aa11.62□□□□□ -0.55
CCDC39-201ENST00000442201 MAGI2Q86UL8 1455 aa11.61□□□□□ -0.55
CCDC39-201ENST00000442201 PPRC1Q5VV67 1664 aaKnown RBP11.6□□□□□ -0.55
CCDC39-201ENST00000442201 KIF13AQ9H1H9 1805 aa11.6□□□□□ -0.55
CCDC39-201ENST00000442201 TSPOAP1O95153 1857 aa11.6□□□□□ -0.55
CCDC39-201ENST00000442201 KANK1Q14678 1352 aa11.59□□□□□ -0.55
CCDC39-201ENST00000442201 RICTORQ6R327 1708 aa11.59□□□□□ -0.55
CCDC39-201ENST00000442201 EIF2AK4Q9P2K8 1649 aaKnown RBP11.58□□□□□ -0.56
CCDC39-201ENST00000442201 RPRD2Q5VT52 1461 aaKnown RBP11.58□□□□□ -0.56
CCDC39-201ENST00000442201 PPP1R15AO75807 674 aaPredicted RBP11.58□□□□□ -0.56
CCDC39-201ENST00000442201 GTF3C3Q9Y5Q9 886 aa11.58□□□□□ -0.56
CCDC39-201ENST00000442201 IQGAP3Q86VI3 1631 aa11.58□□□□□ -0.56
CCDC39-201ENST00000442201 FRMPD1Q5SYB0 1578 aa11.57□□□□□ -0.56
CCDC39-201ENST00000442201 ZMYM4Q5VZL5 1548 aa11.57□□□□□ -0.56
CCDC39-201ENST00000442201 ABCA6Q8N139 1617 aa11.56□□□□□ -0.56
CCDC39-201ENST00000442201 YEATS2Q9ULM3 1422 aa11.56□□□□□ -0.56
CCDC39-201ENST00000442201 TRHP20396 242 aaPredicted RBP11.56□□□□□ -0.56
CCDC39-201ENST00000442201 DIP2CQ9Y2E4 1556 aa11.55□□□□□ -0.56
CCDC39-201ENST00000442201 DEPDC5O75140 1603 aa11.55□□□□□ -0.56
CCDC39-201ENST00000442201 PRDM15P57071 1507 aaPredicted RBP11.54□□□□□ -0.56
CCDC39-201ENST00000442201 COL17A1Q9UMD9 1497 aaPredicted RBP11.54□□□□□ -0.56
CCDC39-201ENST00000442201 GGT6Q6P531 493 aa11.54□□□□□ -0.56
CCDC39-201ENST00000442201 L3MBTL2Q969R5 705 aa11.54□□□□□ -0.56
CCDC39-201ENST00000442201 ZNF316A6NFI3 1004 aaPredicted RBP11.53□□□□□ -0.56
CCDC39-201ENST00000442201 VWDEQ8N2E2 1590 aa11.53□□□□□ -0.56
CCDC39-201ENST00000442201 CCDC144AA2RUR9 1427 aa11.52□□□□□ -0.57
CCDC39-201ENST00000442201 ATP10AO60312 1499 aa11.52□□□□□ -0.57
CCDC39-201ENST00000442201 MROH1Q8NDA8 1641 aa11.52□□□□□ -0.57
CCDC39-201ENST00000442201 RNF17Q9BXT8 1623 aaKnown RBP11.51□□□□□ -0.57
CCDC39-201ENST00000442201 PLA2R1Q13018 1463 aa11.51□□□□□ -0.57
CCDC39-201ENST00000442201 ANP32EQ9BTT0 268 aa11.5□□□□□ -0.57
CCDC39-201ENST00000442201 WASHC2CQ9Y4E1 1318 aa11.5□□□□□ -0.57
CCDC39-201ENST00000442201 BCORL1Q5H9F3 1711 aa11.5□□□□□ -0.57
CCDC39-201ENST00000442201 TET3O43151 1660 aa11.49□□□□□ -0.57
CCDC39-201ENST00000442201 LMTK2Q8IWU2 1503 aa11.49□□□□□ -0.57
CCDC39-201ENST00000442201 REREQ9P2R6 1566 aa11.47□□□□□ -0.57
CCDC39-201ENST00000442201 PTPRTO14522 1441 aa11.47□□□□□ -0.57
CCDC39-201ENST00000442201 EFCAB6Q5THR3 1501 aa11.47□□□□□ -0.57
CCDC39-201ENST00000442201 E9PCH4 1651 aa11.47□□□□□ -0.57
CCDC39-201ENST00000442201 AGLP35573 1532 aa11.46□□□□□ -0.57
CCDC39-201ENST00000442201 ARHGEF40Q8TER5 1519 aa11.46□□□□□ -0.57
CCDC39-201ENST00000442201 ABCC3O15438 1527 aa11.45□□□□□ -0.58
CCDC39-201ENST00000442201 SLC24A1O60721 1099 aa11.45□□□□□ -0.58
CCDC39-201ENST00000442201 TRPM2O94759 1503 aa11.45□□□□□ -0.58
CCDC39-201ENST00000442201 PPP6R1Q9UPN7 881 aa11.44□□□□□ -0.58
CCDC39-201ENST00000442201 RGL3Q3MIN7 710 aa11.44□□□□□ -0.58
CCDC39-201ENST00000442201 NPATQ14207 1427 aa11.44□□□□□ -0.58
CCDC39-201ENST00000442201 NBPF8Q3BBV2 869 aa11.43□□□□□ -0.58
CCDC39-201ENST00000442201 DCAF11Q8TEB1 546 aa11.43□□□□□ -0.58
CCDC39-201ENST00000442201 CEP152O94986 1710 aa11.42□□□□□ -0.58
CCDC39-201ENST00000442201 ZNF326Q5BKZ1 582 aaKnown RBP11.42□□□□□ -0.58
CCDC39-201ENST00000442201 KDM2AQ9Y2K7 1162 aa11.42□□□□□ -0.58
CCDC39-201ENST00000442201 ARHGAP31Q2M1Z3 1444 aa11.41□□□□□ -0.58
CCDC39-201ENST00000442201 SPHKAPQ2M3C7 1700 aa11.41□□□□□ -0.58
CCDC39-201ENST00000442201 MLECQ14165 292 aa11.41□□□□□ -0.58
CCDC39-201ENST00000442201 UHRF1BP1Q6BDS2 1440 aa11.4□□□□□ -0.58
CCDC39-201ENST00000442201 SPATA31E1Q6ZUB1 1445 aa11.4□□□□□ -0.58
CCDC39-201ENST00000442201 CNTLNQ9NXG0 1405 aa11.4□□□□□ -0.58
CCDC39-201ENST00000442201 ZC3H13Q5T200 1668 aaKnown RBP11.4□□□□□ -0.58
CCDC39-201ENST00000442201 ARID4BQ4LE39 1312 aaPredicted RBP11.4□□□□□ -0.58
CCDC39-201ENST00000442201 DIEXFQ68CQ4 756 aaKnown RBP11.4□□□□□ -0.59
CCDC39-201ENST00000442201 CAMSAP1Q5T5Y3 1602 aa11.39□□□□□ -0.59
CCDC39-201ENST00000442201 CLTCL1P53675 1640 aa11.38□□□□□ -0.59
CCDC39-201ENST00000442201 NOS1P29475 1434 aa11.38□□□□□ -0.59
CCDC39-201ENST00000442201 ESF1Q9H501 851 aaKnown RBP11.38□□□□□ -0.59
CCDC39-201ENST00000442201 EIF4G2P78344 907 aaKnown RBP eCLIP11.38□□□□□ -0.59
CCDC39-201ENST00000442201 STAC3Q96MF2 364 aa11.38□□□□□ -0.59
CCDC39-201ENST00000442201 UGGT1Q9NYU2 1555 aa11.36□□□□□ -0.59
CCDC39-201ENST00000442201 HIRIP3Q9BW71 556 aaPredicted RBP11.36□□□□□ -0.59
CCDC39-201ENST00000442201 SIGLEC1Q9BZZ2 1709 aa11.36□□□□□ -0.59
CCDC39-201ENST00000442201 PRAG1Q86YV5 1406 aa11.36□□□□□ -0.59
CCDC39-201ENST00000442201 CHGAP10645 457 aaKnown RBP11.35□□□□□ -0.59
CCDC39-201ENST00000442201 HSPA5P11021 654 aaKnown RBP11.35□□□□□ -0.59
CCDC39-201ENST00000442201 SLC52A1Q9NWF4 448 aa11.35□□□□□ -0.59
CCDC39-201ENST00000442201 NEURL4Q96JN8 1562 aa11.35□□□□□ -0.59
CCDC39-201ENST00000442201 RALGAPBQ86X10 1494 aa11.35□□□□□ -0.59
CCDC39-201ENST00000442201 FBXO31Q5XUX0 539 aaPredicted RBP11.33□□□□□ -0.6
CCDC39-201ENST00000442201 CARD11Q9BXL7 1154 aa11.33□□□□□ -0.6
CCDC39-201ENST00000442201 IDI1Q13907 227 aa11.33□□□□□ -0.6
CCDC39-201ENST00000442201 ROCK2O75116 1388 aaKnown RBP11.32□□□□□ -0.6
CCDC39-201ENST00000442201 ERVK-7P63135 1459 aa11.32□□□□□ -0.6
CCDC39-201ENST00000442201 SYNMO15061 1565 aa11.32□□□□□ -0.6
CCDC39-201ENST00000442201 ADGRB3O60242 1522 aa11.31□□□□□ -0.6
CCDC39-201ENST00000442201 ZMYM3Q14202 1370 aa11.31□□□□□ -0.6
CCDC39-201ENST00000442201 CLTCQ00610 1675 aaKnown RBP11.31□□□□□ -0.6
CCDC39-201ENST00000442201 USP47Q96K76 1375 aa11.31□□□□□ -0.6
CCDC39-201ENST00000442201 RPGRIP1LQ68CZ1 1315 aa11.31□□□□□ -0.6
CCDC39-201ENST00000442201 KIF1BO60333 1816 aa11.3□□□□□ -0.6
CCDC39-201ENST00000442201 PREX1Q8TCU6 1659 aa11.3□□□□□ -0.6
CCDC39-201ENST00000442201 PIK3C2BO00750 1634 aa11.3□□□□□ -0.6
CCDC39-201ENST00000442201 CFAP65Q6ZU64 1925 aaKnown RBP11.29□□□□□ -0.6
CCDC39-201ENST00000442201 NBPF1Q3BBV0 1214 aa11.29□□□□□ -0.6
CCDC39-201ENST00000442201 GPRASP1Q5JY77 1395 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms