RNA–Protein interactions for RNA: ENST00000440048.1

VARS-217, Transcript of valyl-tRNA synthetase, humanhuman

TSL 1 (best)

Gene VARS, Length 804 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-217ENST00000440048 EIF2AK4Q9P2K8 1649 aaKnown RBP36.43■■■■□ 3.42
VARS-217ENST00000440048 CHIC2Q9UKJ5 165 aa36.42■■■■□ 3.42
VARS-217ENST00000440048 RNF17Q9BXT8 1623 aaKnown RBP36.4■■■■□ 3.42
VARS-217ENST00000440048 HSPA2P54652 639 aa36.38■■■■□ 3.41
VARS-217ENST00000440048 FAM135AQ9P2D6 1515 aa36.38■■■■□ 3.41
VARS-217ENST00000440048 ANKRD30AQ9BXX3 1397 aa36.38■■■■□ 3.41
VARS-217ENST00000440048 KDM5DQ9BY66 1539 aa36.37■■■■□ 3.41
VARS-217ENST00000440048 NPATQ14207 1427 aa36.36■■■■□ 3.41
VARS-217ENST00000440048 UHRF1BP1Q6BDS2 1440 aa36.36■■■■□ 3.41
VARS-217ENST00000440048 NCOA1Q15788 1441 aa36.34■■■■□ 3.41
VARS-217ENST00000440048 ERBINQ96RT1 1412 aa36.34■■■■□ 3.41
VARS-217ENST00000440048 WASHC2CQ9Y4E1 1318 aa36.34■■■■□ 3.41
VARS-217ENST00000440048 ADGRL2O95490 1459 aa36.33■■■■□ 3.41
VARS-217ENST00000440048 PTPRKQ15262 1439 aa36.32■■■■□ 3.4
VARS-217ENST00000440048 MROH1Q8NDA8 1641 aa36.3■■■■□ 3.4
VARS-217ENST00000440048 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP36.25■■■■□ 3.39
VARS-217ENST00000440048 ABCC3O15438 1527 aa36.24■■■■□ 3.39
VARS-217ENST00000440048 ZC3H13Q5T200 1668 aaKnown RBP36.24■■■■□ 3.39
VARS-217ENST00000440048 PZPP20742 1482 aa36.22■■■■□ 3.39
VARS-217ENST00000440048 CEP152O94986 1710 aa36.2■■■■□ 3.38
VARS-217ENST00000440048 DEPDC5O75140 1603 aa36.19■■■■□ 3.38
VARS-217ENST00000440048 PRDM15P57071 1507 aaPredicted RBP36.19■■■■□ 3.38
VARS-217ENST00000440048 FBXO31Q5XUX0 539 aaPredicted RBP36.18■■■■□ 3.38
VARS-217ENST00000440048 ILDR1Q86SU0 546 aaPredicted RBP36.18■■■■□ 3.38
VARS-217ENST00000440048 MYO3AQ8NEV4 1616 aa36.18■■■■□ 3.38
VARS-217ENST00000440048 RRBP1Q9P2E9 1410 aaKnown RBP36.17■■■■□ 3.38
VARS-217ENST00000440048 ITGAEP38570 1179 aa36.15■■■■□ 3.38
VARS-217ENST00000440048 DMRT2Q9Y5R5 561 aa36.15■■■■□ 3.38
VARS-217ENST00000440048 GRWD1Q9BQ67 446 aaKnown RBP eCLIP36.14■■■■□ 3.38
VARS-217ENST00000440048 ROCK1Q13464 1354 aa36.13■■■■□ 3.37
VARS-217ENST00000440048 CAMSAP1Q5T5Y3 1602 aa36.12■■■■□ 3.37
VARS-217ENST00000440048 ANKRD50Q9ULJ7 1429 aa36.12■■■■□ 3.37
VARS-217ENST00000440048 ZNF142P52746 1687 aaPredicted RBP36.12■■■■□ 3.37
VARS-217ENST00000440048 TNRQ92752 1358 aa36.11■■■■□ 3.37
VARS-217ENST00000440048 STRCQ7RTU9 1775 aa36.1■■■■□ 3.37
VARS-217ENST00000440048 CEP170BQ9Y4F5 1589 aaPredicted RBP36.09■■■■□ 3.37
VARS-217ENST00000440048 KANK1Q14678 1352 aa36.08■■■■□ 3.37
VARS-217ENST00000440048 CFAP65Q6ZU64 1925 aaKnown RBP36.05■■■■□ 3.36
VARS-217ENST00000440048 VWDEQ8N2E2 1590 aa36.05■■■■□ 3.36
VARS-217ENST00000440048 A2ML1A8K2U0 1454 aa36.03■■■■□ 3.36
VARS-217ENST00000440048 SPATA31D1Q6ZQQ2 1576 aa36.02■■■■□ 3.36
VARS-217ENST00000440048 ERVK-7P63135 1459 aa36.01■■■■□ 3.36
VARS-217ENST00000440048 ARHGAP31Q2M1Z3 1444 aa36■■■■□ 3.35
VARS-217ENST00000440048 LMTK2Q8IWU2 1503 aa36■■■■□ 3.35
VARS-217ENST00000440048 FBXO41Q8TF61 875 aa35.97■■■■□ 3.35
VARS-217ENST00000440048 NLRP1Q9C000 1473 aa35.95■■■■□ 3.35
VARS-217ENST00000440048 PTPRTO14522 1441 aa35.94■■■■□ 3.34
VARS-217ENST00000440048 UNC13BO14795 1591 aa35.93■■■■□ 3.34
VARS-217ENST00000440048 PLA2R1Q13018 1463 aa35.91■■■■□ 3.34
VARS-217ENST00000440048 EFCAB6Q5THR3 1501 aa35.88■■■■□ 3.33
VARS-217ENST00000440048 NCKAP5LQ9HCH0 1330 aa35.87■■■■□ 3.33
VARS-217ENST00000440048 UGGT1Q9NYU2 1555 aa35.85■■■■□ 3.33
VARS-217ENST00000440048 CERKQ8TCT0 537 aa35.84■■■■□ 3.33
VARS-217ENST00000440048 PKD2Q13563 968 aa35.83■■■■□ 3.33
VARS-217ENST00000440048 TET3O43151 1660 aa35.83■■■■□ 3.33
VARS-217ENST00000440048 THEMISQ8N1K5 641 aaPredicted RBP35.81■■■■□ 3.32
VARS-217ENST00000440048 IQGAP3Q86VI3 1631 aa35.79■■■■□ 3.32
VARS-217ENST00000440048 GCC2Q8IWJ2 1684 aa35.78■■■■□ 3.32
VARS-217ENST00000440048 NAIPQ13075 1403 aa35.78■■■■□ 3.32
VARS-217ENST00000440048 RPRD2Q5VT52 1461 aaKnown RBP35.76■■■■□ 3.32
VARS-217ENST00000440048 NUP155O75694 1391 aa35.76■■■■□ 3.31
VARS-217ENST00000440048 NOS1P29475 1434 aa35.75■■■■□ 3.31
VARS-217ENST00000440048 UBR1Q8IWV7 1749 aa35.75■■■■□ 3.31
VARS-217ENST00000440048 POLR1AO95602 1720 aaPredicted RBP35.74■■■■□ 3.31
VARS-217ENST00000440048 SYNMO15061 1565 aa35.74■■■■□ 3.31
VARS-217ENST00000440048 PIK3C2BO00750 1634 aa35.71■■■■□ 3.31
VARS-217ENST00000440048 HFM1A2PYH4 1435 aa35.7■■■■□ 3.31
VARS-217ENST00000440048 E9PCH4 1651 aa35.69■■■■□ 3.3
VARS-217ENST00000440048 ANKLE2Q86XL3 938 aa35.69■■■■□ 3.3
VARS-217ENST00000440048 NEURL4Q96JN8 1562 aa35.68■■■■□ 3.3
VARS-217ENST00000440048 IDI1Q13907 227 aa35.67■■■■□ 3.3
VARS-217ENST00000440048 SLC52A1Q9NWF4 448 aa35.61■■■■□ 3.29
VARS-217ENST00000440048 KDM5AP29375 1690 aaKnown RBP35.61■■■■□ 3.29
VARS-217ENST00000440048 STAG3Q9UJ98 1225 aa35.6■■■■□ 3.29
VARS-217ENST00000440048 LTBP4Q8N2S1 1624 aa35.6■■■■□ 3.29
VARS-217ENST00000440048 MED14O60244 1454 aa35.58■■■■□ 3.29
VARS-217ENST00000440048 ARHGAP23Q9P227 1491 aa35.58■■■■□ 3.29
VARS-217ENST00000440048 SLIT1O75093 1534 aa35.57■■■■□ 3.29
VARS-217ENST00000440048 NPHP4O75161 1426 aaPredicted RBP35.56■■■■□ 3.28
VARS-217ENST00000440048 ADGRB3O60242 1522 aa35.55■■■■□ 3.28
VARS-217ENST00000440048 ZNF335Q9H4Z2 1342 aaPredicted RBP35.54■■■■□ 3.28
VARS-217ENST00000440048 IQSEC2Q5JU85 1478 aa35.54■■■■□ 3.28
VARS-217ENST00000440048 TMEM2Q9UHN6 1383 aa35.52■■■■□ 3.28
VARS-217ENST00000440048 SCAF11Q99590 1463 aaKnown RBP35.52■■■■□ 3.28
VARS-217ENST00000440048 IQGAP1P46940 1657 aa35.52■■■■□ 3.28
VARS-217ENST00000440048 LTKP29376 864 aa35.51■■■■□ 3.28
VARS-217ENST00000440048 TRIM52Q96A61 297 aa35.51■■■■□ 3.28
VARS-217ENST00000440048 TXNDC2Q86VQ3 553 aa35.5■■■■□ 3.27
VARS-217ENST00000440048 MYO5BQ9ULV0 1848 aa35.48■■■■□ 3.27
VARS-217ENST00000440048 EID1Q9Y6B2 187 aa35.47■■■■□ 3.27
VARS-217ENST00000440048 SPHKAPQ2M3C7 1700 aa35.46■■■■□ 3.27
VARS-217ENST00000440048 TMEM131LA2VDJ0 1609 aa35.45■■■■□ 3.27
VARS-217ENST00000440048 CHGAP10645 457 aaKnown RBP35.38■■■■□ 3.25
VARS-217ENST00000440048 SLC4A1APQ9BWU0 796 aaKnown RBP35.37■■■■□ 3.25
VARS-217ENST00000440048 SETD5Q9C0A6 1442 aa35.35■■■■□ 3.25
VARS-217ENST00000440048 ZFYVE9O95405 1425 aa35.33■■■■□ 3.25
VARS-217ENST00000440048 TRPM2O94759 1503 aa35.32■■■■□ 3.24
VARS-217ENST00000440048 RIMS2Q9UQ26 1411 aa35.32■■■■□ 3.24
VARS-217ENST00000440048 CPS1P31327 1500 aa35.31■■■■□ 3.24
VARS-217ENST00000440048 CLTCL1P53675 1640 aa35.28■■■■□ 3.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms