RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 KDM5DQ9BY66 1539 aa30.62■■■□□ 2.49
CHD3-204ENST00000439235 KIF3BO15066 747 aa30.61■■■□□ 2.49
CHD3-204ENST00000439235 DEPDC5O75140 1603 aa30.61■■■□□ 2.49
CHD3-204ENST00000439235 RNF17Q9BXT8 1623 aaKnown RBP30.6■■■□□ 2.49
CHD3-204ENST00000439235 NUP155O75694 1391 aa30.57■■■□□ 2.48
CHD3-204ENST00000439235 PRDM15P57071 1507 aaPredicted RBP30.57■■■□□ 2.48
CHD3-204ENST00000439235 DHX57Q6P158 1386 aaKnown RBP30.56■■■□□ 2.48
CHD3-204ENST00000439235 KANK1Q14678 1352 aa30.54■■■□□ 2.48
CHD3-204ENST00000439235 PZPP20742 1482 aa30.52■■■□□ 2.48
CHD3-204ENST00000439235 IQGAP3Q86VI3 1631 aa30.52■■■□□ 2.48
CHD3-204ENST00000439235 MROH1Q8NDA8 1641 aa30.52■■■□□ 2.48
CHD3-204ENST00000439235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.52■■■□□ 2.48
CHD3-204ENST00000439235 KDM4FA0A1W2PPD8 638 aa30.51■■■□□ 2.47
CHD3-204ENST00000439235 FAM135AQ9P2D6 1515 aa30.5■■■□□ 2.47
CHD3-204ENST00000439235 CCER1Q8TC90 406 aaPredicted RBP30.49■■■□□ 2.47
CHD3-204ENST00000439235 VWDEQ8N2E2 1590 aa30.49■■■□□ 2.47
CHD3-204ENST00000439235 SIGLEC1Q9BZZ2 1709 aa30.47■■■□□ 2.47
CHD3-204ENST00000439235 MPHOSPH9Q99550 1183 aa30.47■■■□□ 2.47
CHD3-204ENST00000439235 SLC4A1APQ9BWU0 796 aaKnown RBP30.47■■■□□ 2.47
CHD3-204ENST00000439235 GGT6Q6P531 493 aa30.46■■■□□ 2.47
CHD3-204ENST00000439235 ARID4BQ4LE39 1312 aaPredicted RBP30.43■■■□□ 2.46
CHD3-204ENST00000439235 LMTK2Q8IWU2 1503 aa30.42■■■□□ 2.46
CHD3-204ENST00000439235 ZC3H13Q5T200 1668 aaKnown RBP30.4■■■□□ 2.46
CHD3-204ENST00000439235 ILDR1Q86SU0 546 aaPredicted RBP30.4■■■□□ 2.46
CHD3-204ENST00000439235 PPP6R1Q9UPN7 881 aa30.4■■■□□ 2.46
CHD3-204ENST00000439235 CLSPNQ9HAW4 1339 aa30.39■■■□□ 2.46
CHD3-204ENST00000439235 TET3O43151 1660 aa30.38■■■□□ 2.45
CHD3-204ENST00000439235 ABCC3O15438 1527 aa30.37■■■□□ 2.45
CHD3-204ENST00000439235 PKD2Q13563 968 aa30.35■■■□□ 2.45
CHD3-204ENST00000439235 WASHC2CQ9Y4E1 1318 aa30.35■■■□□ 2.45
CHD3-204ENST00000439235 CEP152O94986 1710 aa30.34■■■□□ 2.45
CHD3-204ENST00000439235 EFCAB6Q5THR3 1501 aa30.32■■■□□ 2.44
CHD3-204ENST00000439235 MLECQ14165 292 aa30.32■■■□□ 2.44
CHD3-204ENST00000439235 CAMSAP1Q5T5Y3 1602 aa30.29■■■□□ 2.44
CHD3-204ENST00000439235 ESF1Q9H501 851 aaKnown RBP30.26■■■□□ 2.43
CHD3-204ENST00000439235 E9PCH4 1651 aa30.26■■■□□ 2.43
CHD3-204ENST00000439235 RPRD2Q5VT52 1461 aaKnown RBP30.25■■■□□ 2.43
CHD3-204ENST00000439235 CNTLNQ9NXG0 1405 aa30.25■■■□□ 2.43
CHD3-204ENST00000439235 FOXD1Q16676 465 aa30.25■■■□□ 2.43
CHD3-204ENST00000439235 ARHGAP31Q2M1Z3 1444 aa30.24■■■□□ 2.43
CHD3-204ENST00000439235 CLTCQ00610 1675 aaKnown RBP30.23■■■□□ 2.43
CHD3-204ENST00000439235 ANKRD30BQ9BXX2 1392 aa30.22■■■□□ 2.43
CHD3-204ENST00000439235 NPATQ14207 1427 aa30.21■■■□□ 2.43
CHD3-204ENST00000439235 MROH2AA6NES4 1674 aa30.16■■■□□ 2.42
CHD3-204ENST00000439235 FER1L4A9Z1Z3 1794 aa30.15■■■□□ 2.42
CHD3-204ENST00000439235 PTPRTO14522 1441 aa30.15■■■□□ 2.42
CHD3-204ENST00000439235 SPHKAPQ2M3C7 1700 aa30.14■■■□□ 2.42
CHD3-204ENST00000439235 TRPM2O94759 1503 aa30.14■■■□□ 2.42
CHD3-204ENST00000439235 PLA2R1Q13018 1463 aa30.12■■■□□ 2.41
CHD3-204ENST00000439235 ADAMTSL3P82987 1691 aa30.11■■■□□ 2.41
CHD3-204ENST00000439235 ZMYM3Q14202 1370 aa30.1■■■□□ 2.41
CHD3-204ENST00000439235 CCDC144AA2RUR9 1427 aa30.1■■■□□ 2.41
CHD3-204ENST00000439235 MADDQ8WXG6 1647 aa30.09■■■□□ 2.41
CHD3-204ENST00000439235 NOS1P29475 1434 aa30.08■■■□□ 2.41
CHD3-204ENST00000439235 ZEB1P37275 1124 aaPredicted RBP30.08■■■□□ 2.41
CHD3-204ENST00000439235 SIN3AQ96ST3 1273 aa30.08■■■□□ 2.41
CHD3-204ENST00000439235 ERVK-7P63135 1459 aa30.06■■■□□ 2.4
CHD3-204ENST00000439235 PREX1Q8TCU6 1659 aa30.06■■■□□ 2.4
CHD3-204ENST00000439235 NEUROD1Q13562 356 aa30.05■■■□□ 2.4
CHD3-204ENST00000439235 SPATA31D1Q6ZQQ2 1576 aa30.03■■■□□ 2.4
CHD3-204ENST00000439235 RIMS1Q86UR5 1692 aaKnown RBP30.02■■■□□ 2.4
CHD3-204ENST00000439235 CLTCL1P53675 1640 aa30■■■□□ 2.39
CHD3-204ENST00000439235 SYNMO15061 1565 aa29.99■■■□□ 2.39
CHD3-204ENST00000439235 C3P01024 1663 aa29.98■■■□□ 2.39
CHD3-204ENST00000439235 TONSLQ96HA7 1378 aa29.98■■■□□ 2.39
CHD3-204ENST00000439235 FBXO31Q5XUX0 539 aaPredicted RBP29.97■■■□□ 2.39
CHD3-204ENST00000439235 TIMELESSQ9UNS1 1208 aa29.97■■■□□ 2.39
CHD3-204ENST00000439235 PIK3C2BO00750 1634 aa29.95■■■□□ 2.38
CHD3-204ENST00000439235 UGGT1Q9NYU2 1555 aa29.94■■■□□ 2.38
CHD3-204ENST00000439235 SLC52A1Q9NWF4 448 aa29.94■■■□□ 2.38
CHD3-204ENST00000439235 TNRQ92752 1358 aa29.92■■■□□ 2.38
CHD3-204ENST00000439235 CFAP65Q6ZU64 1925 aaKnown RBP29.91■■■□□ 2.38
CHD3-204ENST00000439235 NEURL4Q96JN8 1562 aa29.9■■■□□ 2.38
CHD3-204ENST00000439235 CEBPAP49715 358 aaPredicted RBP29.89■■■□□ 2.38
CHD3-204ENST00000439235 SPATA31E1Q6ZUB1 1445 aa29.87■■■□□ 2.37
CHD3-204ENST00000439235 PTPRMP28827 1452 aa29.86■■■□□ 2.37
CHD3-204ENST00000439235 ADGRB3O60242 1522 aa29.86■■■□□ 2.37
CHD3-204ENST00000439235 KIF1BO60333 1816 aa29.85■■■□□ 2.37
CHD3-204ENST00000439235 NLRP1Q9C000 1473 aa29.83■■■□□ 2.37
CHD3-204ENST00000439235 IDI1Q13907 227 aa29.83■■■□□ 2.37
CHD3-204ENST00000439235 PLPPR3Q6T4P5 718 aa29.82■■■□□ 2.36
CHD3-204ENST00000439235 L3MBTL2Q969R5 705 aa29.8■■■□□ 2.36
CHD3-204ENST00000439235 CHGAP10645 457 aaKnown RBP29.79■■■□□ 2.36
CHD3-204ENST00000439235 RGL3Q3MIN7 710 aa29.77■■■□□ 2.36
CHD3-204ENST00000439235 TMEM131LA2VDJ0 1609 aa29.76■■■□□ 2.35
CHD3-204ENST00000439235 MYO3AQ8NEV4 1616 aa29.75■■■□□ 2.35
CHD3-204ENST00000439235 STAG3Q9UJ98 1225 aa29.75■■■□□ 2.35
CHD3-204ENST00000439235 KDM5AP29375 1690 aaKnown RBP29.73■■■□□ 2.35
CHD3-204ENST00000439235 ZNF326Q5BKZ1 582 aaKnown RBP29.71■■■□□ 2.35
CHD3-204ENST00000439235 RPGRIP1LQ68CZ1 1315 aa29.71■■■□□ 2.35
CHD3-204ENST00000439235 A2ML1A8K2U0 1454 aa29.7■■■□□ 2.35
CHD3-204ENST00000439235 PPP1R15AO75807 674 aaPredicted RBP29.7■■■□□ 2.35
CHD3-204ENST00000439235 STAC3Q96MF2 364 aa29.7■■■□□ 2.35
CHD3-204ENST00000439235 DCAF11Q8TEB1 546 aa29.69■■■□□ 2.34
CHD3-204ENST00000439235 UBR1Q8IWV7 1749 aa29.66■■■□□ 2.34
CHD3-204ENST00000439235 CEP170BQ9Y4F5 1589 aaPredicted RBP29.66■■■□□ 2.34
CHD3-204ENST00000439235 MYOM2P54296 1465 aa29.66■■■□□ 2.34
CHD3-204ENST00000439235 IFT172Q9UG01 1749 aa29.65■■■□□ 2.34
CHD3-204ENST00000439235 ZNF142P52746 1687 aaPredicted RBP29.64■■■□□ 2.34
CHD3-204ENST00000439235 NEXMIFQ5QGS0 1516 aa29.64■■■□□ 2.34
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms