RNA–Protein interactions for RNA: ENST00000438862.6

CSTF3-203, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 1 (best) BASIC

Gene CSTF3, Length 1,132 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-203ENST00000438862 PTPRKQ15262 1439 aa18.57■□□□□ 0.56
CSTF3-203ENST00000438862 CLTCQ00610 1675 aaKnown RBP18.55■□□□□ 0.56
CSTF3-203ENST00000438862 SPAG9O60271 1321 aaKnown RBP18.52■□□□□ 0.56
CSTF3-203ENST00000438862 SAMD9LQ8IVG5 1584 aa18.52■□□□□ 0.56
CSTF3-203ENST00000438862 SHANK2Q9UPX8 1470 aa18.52■□□□□ 0.55
CSTF3-203ENST00000438862 A2ML1A8K2U0 1454 aa18.51■□□□□ 0.55
CSTF3-203ENST00000438862 ARHGAP35Q9NRY4 1499 aa18.51■□□□□ 0.55
CSTF3-203ENST00000438862 UBTFP17480 764 aaKnown RBP18.49■□□□□ 0.55
CSTF3-203ENST00000438862 GGT6Q6P531 493 aa18.49■□□□□ 0.55
CSTF3-203ENST00000438862 LRRIQ1Q96JM4 1722 aa18.49■□□□□ 0.55
CSTF3-203ENST00000438862 DNMT1P26358 1616 aaKnown RBP18.49■□□□□ 0.55
CSTF3-203ENST00000438862 POLA2Q14181 598 aa18.48■□□□□ 0.55
CSTF3-203ENST00000438862 CDC42BPAQ5VT25 1732 aa18.47■□□□□ 0.55
CSTF3-203ENST00000438862 SLC4A1APQ9BWU0 796 aaKnown RBP18.47■□□□□ 0.55
CSTF3-203ENST00000438862 ZNF777Q9ULD5 760 aaPredicted RBP18.47■□□□□ 0.55
CSTF3-203ENST00000438862 A2MP01023 1474 aa18.46■□□□□ 0.55
CSTF3-203ENST00000438862 PLXNC1O60486 1568 aa18.46■□□□□ 0.55
CSTF3-203ENST00000438862 POLR1AO95602 1720 aaPredicted RBP18.46■□□□□ 0.55
CSTF3-203ENST00000438862 HNRNPMP52272 730 aaKnown RBP eCLIP18.45■□□□□ 0.54
CSTF3-203ENST00000438862 ATP7AQ04656 1500 aa18.44■□□□□ 0.54
CSTF3-203ENST00000438862 ANKLE2Q86XL3 938 aa18.44■□□□□ 0.54
CSTF3-203ENST00000438862 CCDC18Q5T9S5 1454 aa18.44■□□□□ 0.54
CSTF3-203ENST00000438862 SYCP2Q9BX26 1530 aa18.42■□□□□ 0.54
CSTF3-203ENST00000438862 NEURL4Q96JN8 1562 aa18.42■□□□□ 0.54
CSTF3-203ENST00000438862 KIAA1107Q9UPP5 1409 aa18.41■□□□□ 0.54
CSTF3-203ENST00000438862 THEMISQ8N1K5 641 aaPredicted RBP18.4■□□□□ 0.54
CSTF3-203ENST00000438862 INO80Q9ULG1 1556 aaPredicted RBP18.39■□□□□ 0.53
CSTF3-203ENST00000438862 ALKQ9UM73 1620 aa18.39■□□□□ 0.53
CSTF3-203ENST00000438862 PLEKHH2Q8IVE3 1493 aa18.39■□□□□ 0.53
CSTF3-203ENST00000438862 VWDEQ8N2E2 1590 aa18.38■□□□□ 0.53
CSTF3-203ENST00000438862 TNRQ92752 1358 aa18.38■□□□□ 0.53
CSTF3-203ENST00000438862 CASKIN1Q8WXD9 1431 aa18.38■□□□□ 0.53
CSTF3-203ENST00000438862 GPATCH8Q9UKJ3 1502 aaKnown RBP18.38■□□□□ 0.53
CSTF3-203ENST00000438862 FOXD4L1Q9NU39 408 aa18.37■□□□□ 0.53
CSTF3-203ENST00000438862 RGS17Q9UGC6 210 aaPredicted RBP18.37■□□□□ 0.53
CSTF3-203ENST00000438862 ATF5Q9Y2D1 282 aaPredicted RBP18.37■□□□□ 0.53
CSTF3-203ENST00000438862 MED14O60244 1454 aa18.36■□□□□ 0.53
CSTF3-203ENST00000438862 ADGBQ8N7X0 1667 aa18.36■□□□□ 0.53
CSTF3-203ENST00000438862 EHMT2Q96KQ7 1210 aa18.36■□□□□ 0.53
CSTF3-203ENST00000438862 RBM42Q9BTD8 480 aaKnown RBP18.36■□□□□ 0.53
CSTF3-203ENST00000438862 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.35■□□□□ 0.53
CSTF3-203ENST00000438862 CFDP1Q9UEE9 299 aaPredicted RBP18.35■□□□□ 0.53
CSTF3-203ENST00000438862 NPHP4O75161 1426 aaPredicted RBP18.34■□□□□ 0.53
CSTF3-203ENST00000438862 FBXO31Q5XUX0 539 aaPredicted RBP18.34■□□□□ 0.53
CSTF3-203ENST00000438862 DEPDC5O75140 1603 aa18.33■□□□□ 0.52
CSTF3-203ENST00000438862 PZPP20742 1482 aa18.31■□□□□ 0.52
CSTF3-203ENST00000438862 LRRC7Q96NW7 1537 aa18.3■□□□□ 0.52
CSTF3-203ENST00000438862 NLRP1Q9C000 1473 aa18.3■□□□□ 0.52
CSTF3-203ENST00000438862 DHX29Q7Z478 1369 aaKnown RBP18.3■□□□□ 0.52
CSTF3-203ENST00000438862 FAM135AQ9P2D6 1515 aa18.29■□□□□ 0.52
CSTF3-203ENST00000438862 RNF17Q9BXT8 1623 aaKnown RBP18.29■□□□□ 0.52
CSTF3-203ENST00000438862 MIA2Q96PC5 1412 aa18.29■□□□□ 0.52
CSTF3-203ENST00000438862 UGGT1Q9NYU2 1555 aa18.29■□□□□ 0.52
CSTF3-203ENST00000438862 RTEL1-TNFRSF6BF6WH68 1400 aa18.28■□□□□ 0.52
CSTF3-203ENST00000438862 CCNB3Q8WWL7 1395 aa18.28■□□□□ 0.52
CSTF3-203ENST00000438862 IQGAP1P46940 1657 aa18.28■□□□□ 0.52
CSTF3-203ENST00000438862 WASHC2CQ9Y4E1 1318 aa18.26■□□□□ 0.51
CSTF3-203ENST00000438862 SYNMO15061 1565 aa18.26■□□□□ 0.51
CSTF3-203ENST00000438862 KIF3BO15066 747 aa18.26■□□□□ 0.51
CSTF3-203ENST00000438862 STRCP1A6NGW2 1772 aa18.25■□□□□ 0.51
CSTF3-203ENST00000438862 KDM5DQ9BY66 1539 aa18.25■□□□□ 0.51
CSTF3-203ENST00000438862 FYCO1Q9BQS8 1478 aa18.25■□□□□ 0.51
CSTF3-203ENST00000438862 POTEAQ6S8J7 498 aa18.24■□□□□ 0.51
CSTF3-203ENST00000438862 MBD5Q9P267 1494 aa18.2■□□□□ 0.5
CSTF3-203ENST00000438862 ZNF644Q9H582 1327 aaPredicted RBP18.19■□□□□ 0.5
CSTF3-203ENST00000438862 FAM135BQ49AJ0 1406 aa18.18■□□□□ 0.5
CSTF3-203ENST00000438862 ZBTB22O15209 634 aa18.16■□□□□ 0.5
CSTF3-203ENST00000438862 RSPH4AQ5TD94 716 aa18.16■□□□□ 0.5
CSTF3-203ENST00000438862 MTUS2Q5JR59 1369 aa18.15■□□□□ 0.5
CSTF3-203ENST00000438862 ZC3H13Q5T200 1668 aaKnown RBP18.14■□□□□ 0.49
CSTF3-203ENST00000438862 CHRDL2Q6WN34 429 aa18.12■□□□□ 0.49
CSTF3-203ENST00000438862 XIRP1Q702N8 1843 aaKnown RBP18.11■□□□□ 0.49
CSTF3-203ENST00000438862 SCAF11Q99590 1463 aaKnown RBP18.09■□□□□ 0.49
CSTF3-203ENST00000438862 TIAM1Q13009 1591 aa18.08■□□□□ 0.49
CSTF3-203ENST00000438862 CCDC141Q6ZP82 1450 aa18.08■□□□□ 0.49
CSTF3-203ENST00000438862 TXNDC2Q86VQ3 553 aa18.08■□□□□ 0.48
CSTF3-203ENST00000438862 LTKP29376 864 aa18.06■□□□□ 0.48
CSTF3-203ENST00000438862 EID1Q9Y6B2 187 aa18.06■□□□□ 0.48
CSTF3-203ENST00000438862 UBR1Q8IWV7 1749 aa18.06■□□□□ 0.48
CSTF3-203ENST00000438862 TSPY4P0CV99 314 aa18.05■□□□□ 0.48
CSTF3-203ENST00000438862 TSPY10P0CW01 314 aa18.05■□□□□ 0.48
CSTF3-203ENST00000438862 SETD1AO15047 1707 aaKnown RBP18.05■□□□□ 0.48
CSTF3-203ENST00000438862 ERVK-7P63135 1459 aa18.05■□□□□ 0.48
CSTF3-203ENST00000438862 ARHGAP23Q9P227 1491 aa18.04■□□□□ 0.48
CSTF3-203ENST00000438862 UPF1Q92900 1129 aaKnown RBP eCLIP18.04■□□□□ 0.48
CSTF3-203ENST00000438862 ABCC3O15438 1527 aa18.03■□□□□ 0.48
CSTF3-203ENST00000438862 SLIT1O75093 1534 aa18.03■□□□□ 0.48
CSTF3-203ENST00000438862 ROBO1Q9Y6N7 1651 aa18.03■□□□□ 0.48
CSTF3-203ENST00000438862 CEP162Q5TB80 1403 aa18.02■□□□□ 0.48
CSTF3-203ENST00000438862 TMEM94Q12767 1356 aa18.02■□□□□ 0.47
CSTF3-203ENST00000438862 NCOA2Q15596 1464 aa18.01■□□□□ 0.47
CSTF3-203ENST00000438862 EHBP1L1Q8N3D4 1523 aa18.01■□□□□ 0.47
CSTF3-203ENST00000438862 LRRC9Q6ZRR7 1453 aa18.01■□□□□ 0.47
CSTF3-203ENST00000438862 CFAP65Q6ZU64 1925 aaKnown RBP18■□□□□ 0.47
CSTF3-203ENST00000438862 KCNA6P17658 529 aa18■□□□□ 0.47
CSTF3-203ENST00000438862 ZBTB12Q9Y330 459 aaPredicted RBP18■□□□□ 0.47
CSTF3-203ENST00000438862 JCADQ9P266 1359 aa18■□□□□ 0.47
CSTF3-203ENST00000438862 PROSER2Q86WR7 435 aaPredicted RBP17.99■□□□□ 0.47
CSTF3-203ENST00000438862 CAMSAP2Q08AD1 1489 aa17.99■□□□□ 0.47
CSTF3-203ENST00000438862 ARHGEF5Q12774 1597 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms