RNA–Protein interactions for RNA: ENST00000435455.5

SMPD4-207, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 5

Gene SMPD4, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-207ENST00000435455 ZMYM3Q14202 1370 aa25.02■■□□□ 1.6
SMPD4-207ENST00000435455 RNF17Q9BXT8 1623 aaKnown RBP25.01■■□□□ 1.59
SMPD4-207ENST00000435455 ANKRD30AQ9BXX3 1397 aa25■■□□□ 1.59
SMPD4-207ENST00000435455 KDM5DQ9BY66 1539 aa24.98■■□□□ 1.59
SMPD4-207ENST00000435455 NPATQ14207 1427 aa24.98■■□□□ 1.59
SMPD4-207ENST00000435455 RRP7BPQ9NSQ0 103 aa24.98■■□□□ 1.59
SMPD4-207ENST00000435455 ERBINQ96RT1 1412 aa24.97■■□□□ 1.59
SMPD4-207ENST00000435455 CHIC2Q9UKJ5 165 aa24.97■■□□□ 1.59
SMPD4-207ENST00000435455 ADGRL2O95490 1459 aa24.96■■□□□ 1.59
SMPD4-207ENST00000435455 UHRF1BP1Q6BDS2 1440 aa24.96■■□□□ 1.59
SMPD4-207ENST00000435455 NCOA1Q15788 1441 aa24.95■■□□□ 1.59
SMPD4-207ENST00000435455 WASHC2CQ9Y4E1 1318 aa24.94■■□□□ 1.58
SMPD4-207ENST00000435455 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.93■■□□□ 1.584e-10■■■■■ 33.4
SMPD4-207ENST00000435455 ZC3H13Q5T200 1668 aaKnown RBP24.92■■□□□ 1.58
SMPD4-207ENST00000435455 PTPRKQ15262 1439 aa24.91■■□□□ 1.58
SMPD4-207ENST00000435455 MROH1Q8NDA8 1641 aa24.9■■□□□ 1.58
SMPD4-207ENST00000435455 HSPA2P54652 639 aa24.9■■□□□ 1.58
SMPD4-207ENST00000435455 ABCC3O15438 1527 aa24.87■■□□□ 1.57
SMPD4-207ENST00000435455 PZPP20742 1482 aa24.87■■□□□ 1.57
SMPD4-207ENST00000435455 PRDM15P57071 1507 aaPredicted RBP24.86■■□□□ 1.57
SMPD4-207ENST00000435455 DEPDC5O75140 1603 aa24.86■■□□□ 1.57
SMPD4-207ENST00000435455 RRBP1Q9P2E9 1410 aaKnown RBP24.84■■□□□ 1.57
SMPD4-207ENST00000435455 CEP152O94986 1710 aa24.83■■□□□ 1.57
SMPD4-207ENST00000435455 ROCK1Q13464 1354 aa24.83■■□□□ 1.57
SMPD4-207ENST00000435455 MYO3AQ8NEV4 1616 aa24.83■■□□□ 1.56
SMPD4-207ENST00000435455 ZNF142P52746 1687 aaPredicted RBP24.81■■□□□ 1.56
SMPD4-207ENST00000435455 KANK1Q14678 1352 aa24.81■■□□□ 1.56
SMPD4-207ENST00000435455 ANKRD50Q9ULJ7 1429 aa24.8■■□□□ 1.56
SMPD4-207ENST00000435455 CAMSAP1Q5T5Y3 1602 aa24.8■■□□□ 1.56
SMPD4-207ENST00000435455 TNRQ92752 1358 aa24.79■■□□□ 1.56
SMPD4-207ENST00000435455 ITGAEP38570 1179 aa24.78■■□□□ 1.56
SMPD4-207ENST00000435455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.78■■□□□ 1.562e-6■□□□□ 8.5
SMPD4-207ENST00000435455 CEP170BQ9Y4F5 1589 aaPredicted RBP24.77■■□□□ 1.56
SMPD4-207ENST00000435455 FBXO31Q5XUX0 539 aaPredicted RBP24.77■■□□□ 1.56
SMPD4-207ENST00000435455 VWDEQ8N2E2 1590 aa24.75■■□□□ 1.55
SMPD4-207ENST00000435455 ARHGAP31Q2M1Z3 1444 aa24.74■■□□□ 1.55
SMPD4-207ENST00000435455 A2ML1A8K2U0 1454 aa24.74■■□□□ 1.55
SMPD4-207ENST00000435455 STRCQ7RTU9 1775 aa24.74■■□□□ 1.55
SMPD4-207ENST00000435455 LMTK2Q8IWU2 1503 aa24.73■■□□□ 1.55
SMPD4-207ENST00000435455 CFAP65Q6ZU64 1925 aaKnown RBP24.73■■□□□ 1.55
SMPD4-207ENST00000435455 SPATA31D1Q6ZQQ2 1576 aa24.72■■□□□ 1.55
SMPD4-207ENST00000435455 ERVK-7P63135 1459 aa24.71■■□□□ 1.55
SMPD4-207ENST00000435455 NLRP1Q9C000 1473 aa24.7■■□□□ 1.55
SMPD4-207ENST00000435455 DMRT2Q9Y5R5 561 aa24.7■■□□□ 1.54
SMPD4-207ENST00000435455 UNC13BO14795 1591 aa24.68■■□□□ 1.54
SMPD4-207ENST00000435455 PLA2R1Q13018 1463 aa24.66■■□□□ 1.54
SMPD4-207ENST00000435455 EFCAB6Q5THR3 1501 aa24.65■■□□□ 1.54
SMPD4-207ENST00000435455 PTPRTO14522 1441 aa24.62■■□□□ 1.53
SMPD4-207ENST00000435455 UGGT1Q9NYU2 1555 aa24.62■■□□□ 1.53
SMPD4-207ENST00000435455 TET3O43151 1660 aa24.62■■□□□ 1.53
SMPD4-207ENST00000435455 GCC2Q8IWJ2 1684 aa24.6■■□□□ 1.53
SMPD4-207ENST00000435455 PKD2Q13563 968 aa24.6■■□□□ 1.53
SMPD4-207ENST00000435455 THEMISQ8N1K5 641 aaPredicted RBP24.6■■□□□ 1.53
SMPD4-207ENST00000435455 RPRD2Q5VT52 1461 aaKnown RBP24.58■■□□□ 1.53
SMPD4-207ENST00000435455 IQGAP3Q86VI3 1631 aa24.58■■□□□ 1.53
SMPD4-207ENST00000435455 NAIPQ13075 1403 aa24.57■■□□□ 1.52
SMPD4-207ENST00000435455 NCKAP5LQ9HCH0 1330 aa24.57■■□□□ 1.52
SMPD4-207ENST00000435455 POLR1AO95602 1720 aaPredicted RBP24.55■■□□□ 1.52
SMPD4-207ENST00000435455 NUP155O75694 1391 aa24.54■■□□□ 1.52
SMPD4-207ENST00000435455 HFM1A2PYH4 1435 aa24.54■■□□□ 1.52
SMPD4-207ENST00000435455 NOS1P29475 1434 aa24.53■■□□□ 1.52
SMPD4-207ENST00000435455 UBR1Q8IWV7 1749 aa24.53■■□□□ 1.52
SMPD4-207ENST00000435455 SYNMO15061 1565 aa24.52■■□□□ 1.52
SMPD4-207ENST00000435455 ANKLE2Q86XL3 938 aa24.5■■□□□ 1.51
SMPD4-207ENST00000435455 PIK3C2BO00750 1634 aa24.5■■□□□ 1.51
SMPD4-207ENST00000435455 E9PCH4 1651 aa24.5■■□□□ 1.51
SMPD4-207ENST00000435455 KDM5AP29375 1690 aaKnown RBP24.49■■□□□ 1.51
SMPD4-207ENST00000435455 SLC52A1Q9NWF4 448 aa24.47■■□□□ 1.51
SMPD4-207ENST00000435455 NEURL4Q96JN8 1562 aa24.46■■□□□ 1.51
SMPD4-207ENST00000435455 IDI1Q13907 227 aa24.45■■□□□ 1.5
SMPD4-207ENST00000435455 STAG3Q9UJ98 1225 aa24.44■■□□□ 1.5
SMPD4-207ENST00000435455 SLIT1O75093 1534 aa24.43■■□□□ 1.5
SMPD4-207ENST00000435455 MED14O60244 1454 aa24.43■■□□□ 1.5
SMPD4-207ENST00000435455 ARHGAP23Q9P227 1491 aa24.42■■□□□ 1.5
SMPD4-207ENST00000435455 ADGRB3O60242 1522 aa24.41■■□□□ 1.5
SMPD4-207ENST00000435455 CERKQ8TCT0 537 aa24.4■■□□□ 1.5
SMPD4-207ENST00000435455 NPHP4O75161 1426 aaPredicted RBP24.4■■□□□ 1.5
SMPD4-207ENST00000435455 SCAF11Q99590 1463 aaKnown RBP24.38■■□□□ 1.49
SMPD4-207ENST00000435455 IQGAP1P46940 1657 aa24.38■■□□□ 1.49
SMPD4-207ENST00000435455 TRIM52Q96A61 297 aa24.38■■□□□ 1.49
SMPD4-207ENST00000435455 TMEM2Q9UHN6 1383 aa24.38■■□□□ 1.49
SMPD4-207ENST00000435455 LTBP4Q8N2S1 1624 aa24.37■■□□□ 1.49
SMPD4-207ENST00000435455 EID1Q9Y6B2 187 aa24.37■■□□□ 1.49
SMPD4-207ENST00000435455 SPHKAPQ2M3C7 1700 aa24.36■■□□□ 1.49
SMPD4-207ENST00000435455 TXNDC2Q86VQ3 553 aa24.35■■□□□ 1.49
SMPD4-207ENST00000435455 FBXO41Q8TF61 875 aa24.34■■□□□ 1.49
SMPD4-207ENST00000435455 ZNF335Q9H4Z2 1342 aaPredicted RBP24.34■■□□□ 1.49
SMPD4-207ENST00000435455 MYO5BQ9ULV0 1848 aa24.33■■□□□ 1.49
SMPD4-207ENST00000435455 TMEM131LA2VDJ0 1609 aa24.33■■□□□ 1.49
SMPD4-207ENST00000435455 LTKP29376 864 aa24.32■■□□□ 1.48
SMPD4-207ENST00000435455 ILDR1Q86SU0 546 aaPredicted RBP24.32■■□□□ 1.48
SMPD4-207ENST00000435455 ACIN1Q9UKV3 1341 aaKnown RBP24.32■■□□□ 1.48
SMPD4-207ENST00000435455 SETD5Q9C0A6 1442 aa24.28■■□□□ 1.48
SMPD4-207ENST00000435455 IQSEC2Q5JU85 1478 aa24.28■■□□□ 1.48
SMPD4-207ENST00000435455 SLC4A1APQ9BWU0 796 aaKnown RBP24.28■■□□□ 1.48
SMPD4-207ENST00000435455 CHGAP10645 457 aaKnown RBP24.27■■□□□ 1.48
SMPD4-207ENST00000435455 TRPM2O94759 1503 aa24.26■■□□□ 1.47
SMPD4-207ENST00000435455 HDGFP51858 240 aaKnown RBP24.26■■□□□ 1.47
SMPD4-207ENST00000435455 ZFYVE9O95405 1425 aa24.25■■□□□ 1.47
SMPD4-207ENST00000435455 RIMS2Q9UQ26 1411 aa24.24■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms