RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 ACIN1Q9UKV3 1341 aaKnown RBP11.71□□□□□ -0.53
HMGA1P4-201ENST00000428643 HRCP23327 699 aa11.71□□□□□ -0.53
HMGA1P4-201ENST00000428643 UNC13BO14795 1591 aa11.71□□□□□ -0.54
HMGA1P4-201ENST00000428643 AGLP35573 1532 aa11.7□□□□□ -0.54
HMGA1P4-201ENST00000428643 NUP155O75694 1391 aa11.7□□□□□ -0.54
HMGA1P4-201ENST00000428643 KANK1Q14678 1352 aa11.7□□□□□ -0.54
HMGA1P4-201ENST00000428643 PRDM15P57071 1507 aaPredicted RBP11.69□□□□□ -0.54
HMGA1P4-201ENST00000428643 RNF17Q9BXT8 1623 aaKnown RBP11.68□□□□□ -0.54
HMGA1P4-201ENST00000428643 GGT6Q6P531 493 aa11.68□□□□□ -0.54
HMGA1P4-201ENST00000428643 KDM5DQ9BY66 1539 aa11.68□□□□□ -0.54
HMGA1P4-201ENST00000428643 DEPDC5O75140 1603 aa11.68□□□□□ -0.54
HMGA1P4-201ENST00000428643 MROH1Q8NDA8 1641 aa11.68□□□□□ -0.54
HMGA1P4-201ENST00000428643 BCORL1Q5H9F3 1711 aa11.67□□□□□ -0.54
HMGA1P4-201ENST00000428643 MLECQ14165 292 aa11.67□□□□□ -0.54
HMGA1P4-201ENST00000428643 FAM135AQ9P2D6 1515 aa11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 PZPP20742 1482 aa11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 CCER1Q8TC90 406 aaPredicted RBP11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 SLC4A1APQ9BWU0 796 aaKnown RBP11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 SIGLEC1Q9BZZ2 1709 aa11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 DHX57Q6P158 1386 aaKnown RBP11.66□□□□□ -0.54
HMGA1P4-201ENST00000428643 IQGAP3Q86VI3 1631 aa11.64□□□□□ -0.55
HMGA1P4-201ENST00000428643 MPHOSPH9Q99550 1183 aa11.64□□□□□ -0.55
HMGA1P4-201ENST00000428643 ABCC3O15438 1527 aa11.64□□□□□ -0.55
HMGA1P4-201ENST00000428643 WASHC2CQ9Y4E1 1318 aa11.63□□□□□ -0.55
HMGA1P4-201ENST00000428643 VWDEQ8N2E2 1590 aa11.63□□□□□ -0.55
HMGA1P4-201ENST00000428643 ESF1Q9H501 851 aaKnown RBP11.63□□□□□ -0.55
HMGA1P4-201ENST00000428643 KDM4FA0A1W2PPD8 638 aa11.62□□□□□ -0.55
HMGA1P4-201ENST00000428643 PKD2Q13563 968 aa11.62□□□□□ -0.55
HMGA1P4-201ENST00000428643 LMTK2Q8IWU2 1503 aa11.61□□□□□ -0.55
HMGA1P4-201ENST00000428643 EFCAB6Q5THR3 1501 aa11.6□□□□□ -0.55
HMGA1P4-201ENST00000428643 ZC3H13Q5T200 1668 aaKnown RBP11.6□□□□□ -0.55
HMGA1P4-201ENST00000428643 TET3O43151 1660 aa11.59□□□□□ -0.55
HMGA1P4-201ENST00000428643 FOXD1Q16676 465 aa11.59□□□□□ -0.55
HMGA1P4-201ENST00000428643 PPP6R1Q9UPN7 881 aa11.59□□□□□ -0.55
HMGA1P4-201ENST00000428643 CNTLNQ9NXG0 1405 aa11.59□□□□□ -0.55
HMGA1P4-201ENST00000428643 CEP152O94986 1710 aa11.58□□□□□ -0.56
HMGA1P4-201ENST00000428643 CAMSAP1Q5T5Y3 1602 aa11.57□□□□□ -0.56
HMGA1P4-201ENST00000428643 PHF23Q9BUL5 403 aaPredicted RBP11.57□□□□□ -0.56
HMGA1P4-201ENST00000428643 NPATQ14207 1427 aa11.57□□□□□ -0.56
HMGA1P4-201ENST00000428643 CLTCQ00610 1675 aaKnown RBP11.56□□□□□ -0.56
HMGA1P4-201ENST00000428643 RPRD2Q5VT52 1461 aaKnown RBP11.56□□□□□ -0.56
HMGA1P4-201ENST00000428643 E9PCH4 1651 aa11.55□□□□□ -0.56
HMGA1P4-201ENST00000428643 CLSPNQ9HAW4 1339 aa11.55□□□□□ -0.56
HMGA1P4-201ENST00000428643 ARHGAP31Q2M1Z3 1444 aa11.54□□□□□ -0.56
HMGA1P4-201ENST00000428643 MADDQ8WXG6 1647 aa11.54□□□□□ -0.56
HMGA1P4-201ENST00000428643 FER1L4A9Z1Z3 1794 aa11.54□□□□□ -0.56
HMGA1P4-201ENST00000428643 ANKRD30BQ9BXX2 1392 aa11.54□□□□□ -0.56
HMGA1P4-201ENST00000428643 ZMYM3Q14202 1370 aa11.53□□□□□ -0.56
HMGA1P4-201ENST00000428643 CCDC144AA2RUR9 1427 aa11.52□□□□□ -0.56
HMGA1P4-201ENST00000428643 TRPM2O94759 1503 aa11.52□□□□□ -0.57
HMGA1P4-201ENST00000428643 PLPPR3Q6T4P5 718 aa11.52□□□□□ -0.57
HMGA1P4-201ENST00000428643 ADAMTSL3P82987 1691 aa11.52□□□□□ -0.57
HMGA1P4-201ENST00000428643 ERVK-7P63135 1459 aa11.51□□□□□ -0.57
HMGA1P4-201ENST00000428643 PLA2R1Q13018 1463 aa11.51□□□□□ -0.57
HMGA1P4-201ENST00000428643 NEUROD1Q13562 356 aa11.51□□□□□ -0.57
HMGA1P4-201ENST00000428643 MROH2AA6NES4 1674 aa11.51□□□□□ -0.57
HMGA1P4-201ENST00000428643 PTPRTO14522 1441 aa11.51□□□□□ -0.57
HMGA1P4-201ENST00000428643 RIMS1Q86UR5 1692 aaKnown RBP11.5□□□□□ -0.57
HMGA1P4-201ENST00000428643 NOS1P29475 1434 aa11.5□□□□□ -0.57
HMGA1P4-201ENST00000428643 FBXO31Q5XUX0 539 aaPredicted RBP11.49□□□□□ -0.57
HMGA1P4-201ENST00000428643 SIN3AQ96ST3 1273 aa11.49□□□□□ -0.57
HMGA1P4-201ENST00000428643 UGGT1Q9NYU2 1555 aa11.49□□□□□ -0.57
HMGA1P4-201ENST00000428643 SPHKAPQ2M3C7 1700 aa11.49□□□□□ -0.57
HMGA1P4-201ENST00000428643 CEBPAP49715 358 aaPredicted RBP11.48□□□□□ -0.57
HMGA1P4-201ENST00000428643 TNRQ92752 1358 aa11.48□□□□□ -0.57
HMGA1P4-201ENST00000428643 SYNMO15061 1565 aa11.48□□□□□ -0.57
HMGA1P4-201ENST00000428643 SPATA31D1Q6ZQQ2 1576 aa11.48□□□□□ -0.57
HMGA1P4-201ENST00000428643 PREX1Q8TCU6 1659 aa11.47□□□□□ -0.57
HMGA1P4-201ENST00000428643 TONSLQ96HA7 1378 aa11.47□□□□□ -0.57
HMGA1P4-201ENST00000428643 C3P01024 1663 aa11.46□□□□□ -0.57
HMGA1P4-201ENST00000428643 PTPRMP28827 1452 aa11.46□□□□□ -0.57
HMGA1P4-201ENST00000428643 CLTCL1P53675 1640 aa11.46□□□□□ -0.58
HMGA1P4-201ENST00000428643 CHGAP10645 457 aaKnown RBP11.45□□□□□ -0.58
HMGA1P4-201ENST00000428643 SLC52A1Q9NWF4 448 aa11.44□□□□□ -0.58
HMGA1P4-201ENST00000428643 PIK3C2BO00750 1634 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 ADGRB3O60242 1522 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 ZEB1P37275 1124 aaPredicted RBP11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 IDI1Q13907 227 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 STAG3Q9UJ98 1225 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 NLRP1Q9C000 1473 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 SPATA31E1Q6ZUB1 1445 aa11.42□□□□□ -0.58
HMGA1P4-201ENST00000428643 RGL3Q3MIN7 710 aa11.41□□□□□ -0.58
HMGA1P4-201ENST00000428643 MYO3AQ8NEV4 1616 aa11.41□□□□□ -0.58
HMGA1P4-201ENST00000428643 ZNF326Q5BKZ1 582 aaKnown RBP11.4□□□□□ -0.58
HMGA1P4-201ENST00000428643 UHRF1BP1Q6BDS2 1440 aa11.38□□□□□ -0.59
HMGA1P4-201ENST00000428643 ILDR1Q86SU0 546 aaPredicted RBP11.38□□□□□ -0.59
HMGA1P4-201ENST00000428643 L3MBTL2Q969R5 705 aa11.38□□□□□ -0.59
HMGA1P4-201ENST00000428643 TIMELESSQ9UNS1 1208 aa11.38□□□□□ -0.59
HMGA1P4-201ENST00000428643 A2ML1A8K2U0 1454 aa11.38□□□□□ -0.59
HMGA1P4-201ENST00000428643 NEURL4Q96JN8 1562 aa11.37□□□□□ -0.59
HMGA1P4-201ENST00000428643 TMEM131LA2VDJ0 1609 aa11.37□□□□□ -0.59
HMGA1P4-201ENST00000428643 CEP170BQ9Y4F5 1589 aaPredicted RBP11.37□□□□□ -0.59
HMGA1P4-201ENST00000428643 DCAF11Q8TEB1 546 aa11.36□□□□□ -0.59
HMGA1P4-201ENST00000428643 KDM2AQ9Y2K7 1162 aa11.36□□□□□ -0.59
HMGA1P4-201ENST00000428643 CFAP65Q6ZU64 1925 aaKnown RBP11.36□□□□□ -0.59
HMGA1P4-201ENST00000428643 KIF1BO60333 1816 aa11.35□□□□□ -0.59
HMGA1P4-201ENST00000428643 RIMS2Q9UQ26 1411 aa11.34□□□□□ -0.59
HMGA1P4-201ENST00000428643 RPGRIP1LQ68CZ1 1315 aa11.34□□□□□ -0.59
HMGA1P4-201ENST00000428643 MYOM2P54296 1465 aa11.33□□□□□ -0.6
HMGA1P4-201ENST00000428643 PPP1R15AO75807 674 aaPredicted RBP11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms