RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 MROH2AA6NES4 1674 aa38.38■■■■□ 3.73
HERPUD2-205ENST00000427455 FAM135AQ9P2D6 1515 aa38.38■■■■□ 3.73
HERPUD2-205ENST00000427455 PPP6R1Q9UPN7 881 aa38.37■■■■□ 3.73
HERPUD2-205ENST00000427455 CLTCQ00610 1675 aaKnown RBP38.36■■■■□ 3.73
HERPUD2-205ENST00000427455 ROCK1Q13464 1354 aa38.34■■■■□ 3.73
HERPUD2-205ENST00000427455 C3P01024 1663 aa38.33■■■■□ 3.73
HERPUD2-205ENST00000427455 ITGAEP38570 1179 aa38.32■■■■□ 3.72
HERPUD2-205ENST00000427455 KDM5DQ9BY66 1539 aa38.31■■■■□ 3.72
HERPUD2-205ENST00000427455 MROH1Q8NDA8 1641 aa38.29■■■■□ 3.72
HERPUD2-205ENST00000427455 PLPPR3Q6T4P5 718 aa38.26■■■■□ 3.72
HERPUD2-205ENST00000427455 DEPDC5O75140 1603 aa38.26■■■■□ 3.71
HERPUD2-205ENST00000427455 PRDM15P57071 1507 aaPredicted RBP38.25■■■■□ 3.71
HERPUD2-205ENST00000427455 ZC3H13Q5T200 1668 aaKnown RBP38.24■■■■□ 3.71
HERPUD2-205ENST00000427455 ANKRD50Q9ULJ7 1429 aa38.24■■■■□ 3.71
HERPUD2-205ENST00000427455 ZMYM3Q14202 1370 aa38.22■■■■□ 3.71
HERPUD2-205ENST00000427455 CEBPAP49715 358 aaPredicted RBP38.22■■■■□ 3.71
HERPUD2-205ENST00000427455 WASHC2CQ9Y4E1 1318 aa38.19■■■■□ 3.7
HERPUD2-205ENST00000427455 ABCC3O15438 1527 aa38.18■■■■□ 3.7
HERPUD2-205ENST00000427455 NPATQ14207 1427 aa38.12■■■■□ 3.69
HERPUD2-205ENST00000427455 CEP152O94986 1710 aa38.12■■■■□ 3.69
HERPUD2-205ENST00000427455 PREX1Q8TCU6 1659 aa38.11■■■■□ 3.69
HERPUD2-205ENST00000427455 KANK1Q14678 1352 aa38.09■■■■□ 3.69
HERPUD2-205ENST00000427455 PZPP20742 1482 aa38.09■■■■□ 3.69
HERPUD2-205ENST00000427455 VWDEQ8N2E2 1590 aa38.08■■■■□ 3.69
HERPUD2-205ENST00000427455 CAMSAP1Q5T5Y3 1602 aa38.08■■■■□ 3.69
HERPUD2-205ENST00000427455 LMTK3Q96Q04 1460 aa38.08■■■■□ 3.69
HERPUD2-205ENST00000427455 GCC2Q8IWJ2 1684 aa38.07■■■■□ 3.69
HERPUD2-205ENST00000427455 UNC13BO14795 1591 aa38.06■■■■□ 3.68
HERPUD2-205ENST00000427455 SETD1BQ9UPS6 1966 aaKnown RBP38.06■■■■□ 3.68
HERPUD2-205ENST00000427455 GRWD1Q9BQ67 446 aaKnown RBP eCLIP38.05■■■■□ 3.68
HERPUD2-205ENST00000427455 LMTK2Q8IWU2 1503 aa38.02■■■■□ 3.68
HERPUD2-205ENST00000427455 HFM1A2PYH4 1435 aa38.01■■■■□ 3.68
HERPUD2-205ENST00000427455 NAIPQ13075 1403 aa38.01■■■■□ 3.68
HERPUD2-205ENST00000427455 UHRF1BP1Q6BDS2 1440 aa38.01■■■■□ 3.68
HERPUD2-205ENST00000427455 MYO3AQ8NEV4 1616 aa37.95■■■■□ 3.67
HERPUD2-205ENST00000427455 ARHGAP31Q2M1Z3 1444 aa37.95■■■■□ 3.67
HERPUD2-205ENST00000427455 EFCAB6Q5THR3 1501 aa37.92■■■■□ 3.66
HERPUD2-205ENST00000427455 SPATA31D1Q6ZQQ2 1576 aa37.9■■■■□ 3.66
HERPUD2-205ENST00000427455 FBXO31Q5XUX0 539 aaPredicted RBP37.9■■■■□ 3.66
HERPUD2-205ENST00000427455 IQGAP3Q86VI3 1631 aa37.9■■■■□ 3.66
HERPUD2-205ENST00000427455 TNRQ92752 1358 aa37.89■■■■□ 3.66
HERPUD2-205ENST00000427455 ERVK-7P63135 1459 aa37.89■■■■□ 3.66
HERPUD2-205ENST00000427455 ZNF142P52746 1687 aaPredicted RBP37.88■■■■□ 3.66
HERPUD2-205ENST00000427455 TET3O43151 1660 aa37.88■■■■□ 3.65
HERPUD2-205ENST00000427455 CEP170BQ9Y4F5 1589 aaPredicted RBP37.84■■■■□ 3.65
HERPUD2-205ENST00000427455 NUP155O75694 1391 aa37.82■■■■□ 3.65
HERPUD2-205ENST00000427455 HSPA2P54652 639 aa37.8■■■■□ 3.64
HERPUD2-205ENST00000427455 RPRD2Q5VT52 1461 aaKnown RBP37.79■■■■□ 3.64
HERPUD2-205ENST00000427455 NLRP1Q9C000 1473 aa37.78■■■■□ 3.64
HERPUD2-205ENST00000427455 A2ML1A8K2U0 1454 aa37.77■■■■□ 3.64
HERPUD2-205ENST00000427455 CFAP65Q6ZU64 1925 aaKnown RBP37.77■■■■□ 3.64
HERPUD2-205ENST00000427455 E9PCH4 1651 aa37.71■■■■□ 3.63
HERPUD2-205ENST00000427455 NOS1P29475 1434 aa37.69■■■■□ 3.62
HERPUD2-205ENST00000427455 SYNMO15061 1565 aa37.67■■■■□ 3.62
HERPUD2-205ENST00000427455 SETD5Q9C0A6 1442 aa37.66■■■■□ 3.62
HERPUD2-205ENST00000427455 UGGT1Q9NYU2 1555 aa37.63■■■■□ 3.62
HERPUD2-205ENST00000427455 PLA2R1Q13018 1463 aa37.61■■■■□ 3.61
HERPUD2-205ENST00000427455 TRIM52Q96A61 297 aa37.61■■■■□ 3.61
HERPUD2-205ENST00000427455 STRCQ7RTU9 1775 aa37.59■■■■□ 3.61
HERPUD2-205ENST00000427455 UBR1Q8IWV7 1749 aa37.56■■■■□ 3.6
HERPUD2-205ENST00000427455 PIK3C2BO00750 1634 aa37.56■■■■□ 3.6
HERPUD2-205ENST00000427455 ACIN1Q9UKV3 1341 aaKnown RBP37.56■■■■□ 3.6
HERPUD2-205ENST00000427455 RAB3GAP2Q9H2M9 1393 aa37.54■■■■□ 3.6
HERPUD2-205ENST00000427455 KDM5AP29375 1690 aaKnown RBP37.53■■■■□ 3.6
HERPUD2-205ENST00000427455 THEMISQ8N1K5 641 aaPredicted RBP37.52■■■■□ 3.6
HERPUD2-205ENST00000427455 SPHKAPQ2M3C7 1700 aa37.51■■■■□ 3.6
HERPUD2-205ENST00000427455 SLC52A1Q9NWF4 448 aa37.51■■■■□ 3.6
HERPUD2-205ENST00000427455 IDI1Q13907 227 aa37.48■■■■□ 3.59
HERPUD2-205ENST00000427455 SLC4A1APQ9BWU0 796 aaKnown RBP37.48■■■■□ 3.59
HERPUD2-205ENST00000427455 ADGRB3O60242 1522 aa37.47■■■■□ 3.59
HERPUD2-205ENST00000427455 PTPRTO14522 1441 aa37.45■■■■□ 3.59
HERPUD2-205ENST00000427455 POLR1AO95602 1720 aaPredicted RBP37.45■■■■□ 3.59
HERPUD2-205ENST00000427455 PKD2Q13563 968 aa37.43■■■■□ 3.58
HERPUD2-205ENST00000427455 DMRT2Q9Y5R5 561 aa37.43■■■■□ 3.58
HERPUD2-205ENST00000427455 TRPM2O94759 1503 aa37.41■■■■□ 3.58
HERPUD2-205ENST00000427455 STAG3Q9UJ98 1225 aa37.4■■■■□ 3.58
HERPUD2-205ENST00000427455 NCKAP5LQ9HCH0 1330 aa37.39■■■■□ 3.58
HERPUD2-205ENST00000427455 SLIT1O75093 1534 aa37.39■■■■□ 3.58
HERPUD2-205ENST00000427455 ARHGAP23Q9P227 1491 aa37.38■■■■□ 3.57
HERPUD2-205ENST00000427455 NEURL4Q96JN8 1562 aa37.37■■■■□ 3.57
HERPUD2-205ENST00000427455 HRCP23327 699 aa37.36■■■■□ 3.57
HERPUD2-205ENST00000427455 TMEM131LA2VDJ0 1609 aa37.36■■■■□ 3.57
HERPUD2-205ENST00000427455 ANKLE2Q86XL3 938 aa37.35■■■■□ 3.57
HERPUD2-205ENST00000427455 MPHOSPH9Q99550 1183 aa37.35■■■■□ 3.57
HERPUD2-205ENST00000427455 TMEM2Q9UHN6 1383 aa37.32■■■■□ 3.57
HERPUD2-205ENST00000427455 CLTCL1P53675 1640 aa37.31■■■■□ 3.56
HERPUD2-205ENST00000427455 MYO5BQ9ULV0 1848 aa37.31■■■■□ 3.56
HERPUD2-205ENST00000427455 MED14O60244 1454 aa37.29■■■■□ 3.56
HERPUD2-205ENST00000427455 SCAF11Q99590 1463 aaKnown RBP37.29■■■■□ 3.56
HERPUD2-205ENST00000427455 TRIM26Q12899 539 aaPredicted RBP37.27■■■■□ 3.56
HERPUD2-205ENST00000427455 FOXD1Q16676 465 aa37.24■■■■□ 3.55
HERPUD2-205ENST00000427455 NPHP4O75161 1426 aaPredicted RBP37.24■■■■□ 3.55
HERPUD2-205ENST00000427455 IQGAP1P46940 1657 aa37.23■■■■□ 3.55
HERPUD2-205ENST00000427455 EID1Q9Y6B2 187 aa37.23■■■■□ 3.55
HERPUD2-205ENST00000427455 CHGAP10645 457 aaKnown RBP37.22■■■■□ 3.55
HERPUD2-205ENST00000427455 TXNDC2Q86VQ3 553 aa37.2■■■■□ 3.55
HERPUD2-205ENST00000427455 ZFYVE9O95405 1425 aa37.19■■■■□ 3.54
HERPUD2-205ENST00000427455 LTKP29376 864 aa37.19■■■■□ 3.54
HERPUD2-205ENST00000427455 KIF1BO60333 1816 aa37.19■■■■□ 3.54
HERPUD2-205ENST00000427455 RIMS2Q9UQ26 1411 aa37.17■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms