RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 PRDM15P57071 1507 aaPredicted RBP25.58■■□□□ 1.69
COL7A1-202ENST00000422991 UNC13BO14795 1591 aa25.58■■□□□ 1.69
COL7A1-202ENST00000422991 KIF3BO15066 747 aa25.58■■□□□ 1.69
COL7A1-202ENST00000422991 MADDQ8WXG6 1647 aa25.58■■□□□ 1.69
COL7A1-202ENST00000422991 FER1L4A9Z1Z3 1794 aa25.57■■□□□ 1.68
COL7A1-202ENST00000422991 PTPRMP28827 1452 aa25.57■■□□□ 1.68
COL7A1-202ENST00000422991 FAM135AQ9P2D6 1515 aa25.54■■□□□ 1.68
COL7A1-202ENST00000422991 MLECQ14165 292 aa25.53■■□□□ 1.68
COL7A1-202ENST00000422991 SETD5Q9C0A6 1442 aa25.53■■□□□ 1.68
COL7A1-202ENST00000422991 ZC3H13Q5T200 1668 aaKnown RBP25.52■■□□□ 1.68
COL7A1-202ENST00000422991 VWDEQ8N2E2 1590 aa25.51■■□□□ 1.67
COL7A1-202ENST00000422991 GGT6Q6P531 493 aa25.5■■□□□ 1.67
COL7A1-202ENST00000422991 KDM5DQ9BY66 1539 aa25.5■■□□□ 1.67
COL7A1-202ENST00000422991 CEP152O94986 1710 aa25.49■■□□□ 1.67
COL7A1-202ENST00000422991 CLTCQ00610 1675 aaKnown RBP25.49■■□□□ 1.67
COL7A1-202ENST00000422991 RIMS1Q86UR5 1692 aaKnown RBP25.49■■□□□ 1.67
COL7A1-202ENST00000422991 MROH2AA6NES4 1674 aa25.48■■□□□ 1.67
COL7A1-202ENST00000422991 ABCC3O15438 1527 aa25.47■■□□□ 1.67
COL7A1-202ENST00000422991 IQGAP3Q86VI3 1631 aa25.47■■□□□ 1.67
COL7A1-202ENST00000422991 PPP6R1Q9UPN7 881 aa25.46■■□□□ 1.67
COL7A1-202ENST00000422991 RAB3GAP2Q9H2M9 1393 aa25.45■■□□□ 1.67
COL7A1-202ENST00000422991 CNTLNQ9NXG0 1405 aa25.44■■□□□ 1.66
COL7A1-202ENST00000422991 CAMSAP1Q5T5Y3 1602 aa25.43■■□□□ 1.66
COL7A1-202ENST00000422991 KANK1Q14678 1352 aa25.43■■□□□ 1.66
COL7A1-202ENST00000422991 LMTK2Q8IWU2 1503 aa25.42■■□□□ 1.66
COL7A1-202ENST00000422991 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.41■■□□□ 1.66
COL7A1-202ENST00000422991 TET3O43151 1660 aa25.4■■□□□ 1.66
COL7A1-202ENST00000422991 C3P01024 1663 aa25.39■■□□□ 1.66
COL7A1-202ENST00000422991 WASHC2CQ9Y4E1 1318 aa25.38■■□□□ 1.65
COL7A1-202ENST00000422991 NUP155O75694 1391 aa25.38■■□□□ 1.65
COL7A1-202ENST00000422991 EFCAB6Q5THR3 1501 aa25.37■■□□□ 1.65
COL7A1-202ENST00000422991 ESF1Q9H501 851 aaKnown RBP25.37■■□□□ 1.65
COL7A1-202ENST00000422991 PZPP20742 1482 aa25.34■■□□□ 1.65
COL7A1-202ENST00000422991 HRCP23327 699 aa25.33■■□□□ 1.65
COL7A1-202ENST00000422991 PCGF6Q9BYE7 350 aa25.33■■□□□ 1.65
COL7A1-202ENST00000422991 ACIN1Q9UKV3 1341 aaKnown RBP25.33■■□□□ 1.64
COL7A1-202ENST00000422991 E9PCH4 1651 aa25.31■■□□□ 1.64
COL7A1-202ENST00000422991 ZMYM3Q14202 1370 aa25.31■■□□□ 1.64
COL7A1-202ENST00000422991 ARHGAP31Q2M1Z3 1444 aa25.3■■□□□ 1.64
COL7A1-202ENST00000422991 PLPPR3Q6T4P5 718 aa25.3■■□□□ 1.64
COL7A1-202ENST00000422991 TRIM52Q96A61 297 aa25.3■■□□□ 1.64
COL7A1-202ENST00000422991 NPATQ14207 1427 aa25.28■■□□□ 1.64
COL7A1-202ENST00000422991 PREX1Q8TCU6 1659 aa25.27■■□□□ 1.64
COL7A1-202ENST00000422991 RPRD2Q5VT52 1461 aaKnown RBP25.27■■□□□ 1.64
COL7A1-202ENST00000422991 LMTK3Q96Q04 1460 aa25.27■■□□□ 1.64
COL7A1-202ENST00000422991 SPATA31D1Q6ZQQ2 1576 aa25.23■■□□□ 1.63
COL7A1-202ENST00000422991 ERVK-7P63135 1459 aa25.22■■□□□ 1.63
COL7A1-202ENST00000422991 CEBPAP49715 358 aaPredicted RBP25.22■■□□□ 1.63
COL7A1-202ENST00000422991 CFAP65Q6ZU64 1925 aaKnown RBP25.22■■□□□ 1.63
COL7A1-202ENST00000422991 SLC4A1APQ9BWU0 796 aaKnown RBP25.2■■□□□ 1.62
COL7A1-202ENST00000422991 SPHKAPQ2M3C7 1700 aa25.2■■□□□ 1.62
COL7A1-202ENST00000422991 SYNMO15061 1565 aa25.18■■□□□ 1.62
COL7A1-202ENST00000422991 MPHOSPH9Q99550 1183 aa25.17■■□□□ 1.62
COL7A1-202ENST00000422991 NOS1P29475 1434 aa25.17■■□□□ 1.62
COL7A1-202ENST00000422991 FBXO31Q5XUX0 539 aaPredicted RBP25.16■■□□□ 1.62
COL7A1-202ENST00000422991 MYO3AQ8NEV4 1616 aa25.15■■□□□ 1.62
COL7A1-202ENST00000422991 PKD2Q13563 968 aa25.15■■□□□ 1.62
COL7A1-202ENST00000422991 SETD1BQ9UPS6 1966 aaKnown RBP25.14■■□□□ 1.62
COL7A1-202ENST00000422991 TNRQ92752 1358 aa25.13■■□□□ 1.61
COL7A1-202ENST00000422991 TRPM2O94759 1503 aa25.12■■□□□ 1.61
COL7A1-202ENST00000422991 PTPRTO14522 1441 aa25.12■■□□□ 1.61
COL7A1-202ENST00000422991 HSPA2P54652 639 aa25.11■■□□□ 1.61
COL7A1-202ENST00000422991 PIK3C2BO00750 1634 aa25.11■■□□□ 1.61
COL7A1-202ENST00000422991 ZNF142P52746 1687 aaPredicted RBP25.1■■□□□ 1.61
COL7A1-202ENST00000422991 UHRF1BP1Q6BDS2 1440 aa25.09■■□□□ 1.61
COL7A1-202ENST00000422991 PLA2R1Q13018 1463 aa25.09■■□□□ 1.61
COL7A1-202ENST00000422991 FOXD1Q16676 465 aa25.07■■□□□ 1.6
COL7A1-202ENST00000422991 NLRP1Q9C000 1473 aa25.07■■□□□ 1.6
COL7A1-202ENST00000422991 UGGT1Q9NYU2 1555 aa25.06■■□□□ 1.6
COL7A1-202ENST00000422991 DHX57Q6P158 1386 aaKnown RBP25.05■■□□□ 1.6
COL7A1-202ENST00000422991 CEP170BQ9Y4F5 1589 aaPredicted RBP25.05■■□□□ 1.6
COL7A1-202ENST00000422991 CLTCL1P53675 1640 aa25.05■■□□□ 1.6
COL7A1-202ENST00000422991 A2ML1A8K2U0 1454 aa25.02■■□□□ 1.6
COL7A1-202ENST00000422991 KDM5AP29375 1690 aaKnown RBP25.01■■□□□ 1.59
COL7A1-202ENST00000422991 UBR1Q8IWV7 1749 aa25■■□□□ 1.59
COL7A1-202ENST00000422991 ADGRB3O60242 1522 aa24.99■■□□□ 1.59
COL7A1-202ENST00000422991 ANKRD30BQ9BXX2 1392 aa24.99■■□□□ 1.59
COL7A1-202ENST00000422991 SLC52A1Q9NWF4 448 aa24.98■■□□□ 1.59
COL7A1-202ENST00000422991 KIF1BO60333 1816 aa24.96■■□□□ 1.59
COL7A1-202ENST00000422991 MYO5BQ9ULV0 1848 aa24.96■■□□□ 1.59
COL7A1-202ENST00000422991 TMEM131LA2VDJ0 1609 aa24.96■■□□□ 1.59
COL7A1-202ENST00000422991 CCDC144AA2RUR9 1427 aa24.95■■□□□ 1.59
COL7A1-202ENST00000422991 IDI1Q13907 227 aa24.95■■□□□ 1.58
COL7A1-202ENST00000422991 STRCQ7RTU9 1775 aa24.9■■□□□ 1.58
COL7A1-202ENST00000422991 DMRT2Q9Y5R5 561 aa24.88■■□□□ 1.57
COL7A1-202ENST00000422991 NEURL4Q96JN8 1562 aa24.88■■□□□ 1.57
COL7A1-202ENST00000422991 SLIT1O75093 1534 aa24.85■■□□□ 1.57
COL7A1-202ENST00000422991 SPATA31E1Q6ZUB1 1445 aa24.85■■□□□ 1.57
COL7A1-202ENST00000422991 ARHGAP23Q9P227 1491 aa24.83■■□□□ 1.57
COL7A1-202ENST00000422991 STAG3Q9UJ98 1225 aa24.83■■□□□ 1.57
COL7A1-202ENST00000422991 POLR1AO95602 1720 aaPredicted RBP24.81■■□□□ 1.56
COL7A1-202ENST00000422991 CHGAP10645 457 aaKnown RBP24.81■■□□□ 1.56
COL7A1-202ENST00000422991 THEMISQ8N1K5 641 aaPredicted RBP24.81■■□□□ 1.56
COL7A1-202ENST00000422991 ILDR1Q86SU0 546 aaPredicted RBP24.8■■□□□ 1.56
COL7A1-202ENST00000422991 IFT172Q9UG01 1749 aa24.8■■□□□ 1.56
COL7A1-202ENST00000422991 TMEM2Q9UHN6 1383 aa24.8■■□□□ 1.56
COL7A1-202ENST00000422991 ZFYVE9O95405 1425 aa24.78■■□□□ 1.56
COL7A1-202ENST00000422991 PPLO60437 1756 aa24.78■■□□□ 1.56
COL7A1-202ENST00000422991 NEXMIFQ5QGS0 1516 aa24.78■■□□□ 1.56
COL7A1-202ENST00000422991 CLSPNQ9HAW4 1339 aa24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 103 ms