RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 VWDEQ8N2E2 1590 aa29.11■■■□□ 2.25
VCP-202ENST00000417448 CCNB3Q8WWL7 1395 aa29.08■■■□□ 2.25
VCP-202ENST00000417448 FBXO31Q5XUX0 539 aaPredicted RBP29.06■■■□□ 2.24
VCP-202ENST00000417448 MBD5Q9P267 1494 aa29.05■■■□□ 2.24
VCP-202ENST00000417448 TNRQ92752 1358 aa29.05■■■□□ 2.24
VCP-202ENST00000417448 ZNF644Q9H582 1327 aaPredicted RBP29.04■■■□□ 2.24
VCP-202ENST00000417448 TIAM1Q13009 1591 aa29.03■■■□□ 2.24
VCP-202ENST00000417448 PZPP20742 1482 aa29.03■■■□□ 2.24
VCP-202ENST00000417448 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.01■■■□□ 2.24
VCP-202ENST00000417448 STRCP1A6NGW2 1772 aa29.01■■■□□ 2.23
VCP-202ENST00000417448 KDM5DQ9BY66 1539 aa29■■■□□ 2.23
VCP-202ENST00000417448 DHX29Q7Z478 1369 aaKnown RBP29■■■□□ 2.23
VCP-202ENST00000417448 PHF23Q9BUL5 403 aaPredicted RBP28.99■■■□□ 2.23
VCP-202ENST00000417448 RTEL1-TNFRSF6BF6WH68 1400 aa28.99■■■□□ 2.23
VCP-202ENST00000417448 DEPDC5O75140 1603 aa28.98■■■□□ 2.23
VCP-202ENST00000417448 MED14O60244 1454 aa28.97■■■□□ 2.23
VCP-202ENST00000417448 FAM135AQ9P2D6 1515 aa28.95■■■□□ 2.23
VCP-202ENST00000417448 ANKLE2Q86XL3 938 aa28.95■■■□□ 2.22
VCP-202ENST00000417448 IQGAP1P46940 1657 aa28.95■■■□□ 2.22
VCP-202ENST00000417448 NPHP4O75161 1426 aaPredicted RBP28.94■■■□□ 2.22
VCP-202ENST00000417448 UGGT1Q9NYU2 1555 aa28.94■■■□□ 2.22
VCP-202ENST00000417448 MTUS2Q5JR59 1369 aa28.93■■■□□ 2.22
VCP-202ENST00000417448 KIF3BO15066 747 aa28.92■■■□□ 2.22
VCP-202ENST00000417448 NLRP1Q9C000 1473 aa28.91■■■□□ 2.22
VCP-202ENST00000417448 LOC105371045A0A1W2PR82 267 aa28.91■■■□□ 2.22
VCP-202ENST00000417448 MIA2Q96PC5 1412 aa28.91■■■□□ 2.22
VCP-202ENST00000417448 RNF17Q9BXT8 1623 aaKnown RBP28.9■■■□□ 2.22
VCP-202ENST00000417448 LRRC7Q96NW7 1537 aa28.89■■■□□ 2.22
VCP-202ENST00000417448 THEMISQ8N1K5 641 aaPredicted RBP28.89■■■□□ 2.22
VCP-202ENST00000417448 SENP3Q9H4L4 574 aaPredicted RBP28.89■■■□□ 2.22
VCP-202ENST00000417448 WASHC2CQ9Y4E1 1318 aa28.87■■■□□ 2.21
VCP-202ENST00000417448 SYNMO15061 1565 aa28.87■■■□□ 2.21
VCP-202ENST00000417448 EHBP1L1Q8N3D4 1523 aa28.86■■■□□ 2.21
VCP-202ENST00000417448 CCDC141Q6ZP82 1450 aa28.85■■■□□ 2.21
VCP-202ENST00000417448 ZC3H13Q5T200 1668 aaKnown RBP28.83■■■□□ 2.21
VCP-202ENST00000417448 CEP162Q5TB80 1403 aa28.81■■■□□ 2.2
VCP-202ENST00000417448 RGS17Q9UGC6 210 aaPredicted RBP28.81■■■□□ 2.2
VCP-202ENST00000417448 CAMSAP2Q08AD1 1489 aa28.79■■■□□ 2.2
VCP-202ENST00000417448 XIRP1Q702N8 1843 aaKnown RBP28.77■■■□□ 2.2
VCP-202ENST00000417448 ABCC3O15438 1527 aa28.74■■■□□ 2.19
VCP-202ENST00000417448 UBR1Q8IWV7 1749 aa28.73■■■□□ 2.19
VCP-202ENST00000417448 ERVK-7P63135 1459 aa28.71■■■□□ 2.19
VCP-202ENST00000417448 ARHGEF5Q12774 1597 aa28.71■■■□□ 2.19
VCP-202ENST00000417448 NCOA2Q15596 1464 aa28.69■■■□□ 2.18
VCP-202ENST00000417448 CFAP65Q6ZU64 1925 aaKnown RBP28.69■■■□□ 2.18
VCP-202ENST00000417448 MROH1Q8NDA8 1641 aa28.67■■■□□ 2.18
VCP-202ENST00000417448 CEP152O94986 1710 aa28.66■■■□□ 2.18
VCP-202ENST00000417448 RSPH4AQ5TD94 716 aa28.65■■■□□ 2.18
VCP-202ENST00000417448 SCAF11Q99590 1463 aaKnown RBP28.65■■■□□ 2.18
VCP-202ENST00000417448 EIF2AK4Q9P2K8 1649 aaKnown RBP28.61■■■□□ 2.17
VCP-202ENST00000417448 ARHGAP23Q9P227 1491 aa28.6■■■□□ 2.17
VCP-202ENST00000417448 LTKP29376 864 aa28.6■■■□□ 2.17
VCP-202ENST00000417448 MAST1Q9Y2H9 1570 aa28.59■■■□□ 2.17
VCP-202ENST00000417448 SLIT1O75093 1534 aa28.59■■■□□ 2.17
VCP-202ENST00000417448 POTEAQ6S8J7 498 aa28.58■■■□□ 2.17
VCP-202ENST00000417448 TSPY4P0CV99 314 aa28.56■■■□□ 2.16
VCP-202ENST00000417448 TSPY10P0CW01 314 aa28.56■■■□□ 2.16
VCP-202ENST00000417448 FAM135BQ49AJ0 1406 aa28.54■■■□□ 2.16
VCP-202ENST00000417448 SETD1AO15047 1707 aaKnown RBP28.53■■■□□ 2.16
VCP-202ENST00000417448 ROBO1Q9Y6N7 1651 aa28.51■■■□□ 2.16
VCP-202ENST00000417448 TXNDC2Q86VQ3 553 aa28.51■■■□□ 2.15
VCP-202ENST00000417448 PIK3C2BO00750 1634 aa28.49■■■□□ 2.15
VCP-202ENST00000417448 MAP3K1Q13233 1512 aa28.47■■■□□ 2.15
VCP-202ENST00000417448 TMEM94Q12767 1356 aa28.45■■■□□ 2.14
VCP-202ENST00000417448 PRDM15P57071 1507 aaPredicted RBP28.44■■■□□ 2.14
VCP-202ENST00000417448 ARHGAP31Q2M1Z3 1444 aa28.43■■■□□ 2.14
VCP-202ENST00000417448 DUOX2Q9NRD8 1548 aa28.41■■■□□ 2.14
VCP-202ENST00000417448 TMEM2Q9UHN6 1383 aa28.4■■■□□ 2.14
VCP-202ENST00000417448 EID1Q9Y6B2 187 aa28.4■■■□□ 2.14
VCP-202ENST00000417448 RBM33Q96EV2 1170 aaKnown RBP28.37■■■□□ 2.13
VCP-202ENST00000417448 TET3O43151 1660 aa28.37■■■□□ 2.13
VCP-202ENST00000417448 KDM5AP29375 1690 aaKnown RBP28.37■■■□□ 2.13
VCP-202ENST00000417448 LRRC9Q6ZRR7 1453 aa28.36■■■□□ 2.13
VCP-202ENST00000417448 PHLPP1O60346 1717 aa28.34■■■□□ 2.13
VCP-202ENST00000417448 EFCAB6Q5THR3 1501 aa28.33■■■□□ 2.13
VCP-202ENST00000417448 NWD1Q149M9 1564 aa28.33■■■□□ 2.13
VCP-202ENST00000417448 KCNA6P17658 529 aa28.33■■■□□ 2.13
VCP-202ENST00000417448 CROCC2H7BZ55 1655 aa28.3■■■□□ 2.12
VCP-202ENST00000417448 SLC26A8Q96RN1 970 aa28.3■■■□□ 2.12
VCP-202ENST00000417448 NKTRP30414 1462 aaKnown RBP28.29■■■□□ 2.12
VCP-202ENST00000417448 PROSER2Q86WR7 435 aaPredicted RBP28.29■■■□□ 2.12
VCP-202ENST00000417448 ERBINQ96RT1 1412 aa28.28■■■□□ 2.12
VCP-202ENST00000417448 KIF15Q9NS87 1388 aa28.28■■■□□ 2.12
VCP-202ENST00000417448 MYOM3Q5VTT5 1437 aa28.27■■■□□ 2.12
VCP-202ENST00000417448 COL16A1Q07092 1604 aaPredicted RBP28.25■■■□□ 2.11
VCP-202ENST00000417448 IDI1Q13907 227 aa28.25■■■□□ 2.11
VCP-202ENST00000417448 STAG3Q9UJ98 1225 aa28.25■■■□□ 2.11
VCP-202ENST00000417448 JCADQ9P266 1359 aa28.24■■■□□ 2.11
VCP-202ENST00000417448 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.23■■■□□ 2.115e-9■■□□□ 11.7
VCP-202ENST00000417448 KANK4Q5T7N3 995 aaPredicted RBP28.22■■■□□ 2.11
VCP-202ENST00000417448 ADGRB3O60242 1522 aa28.22■■■□□ 2.11
VCP-202ENST00000417448 LRP6O75581 1613 aa28.21■■■□□ 2.11
VCP-202ENST00000417448 MSH6P52701 1360 aa28.21■■■□□ 2.11
VCP-202ENST00000417448 LMTK2Q8IWU2 1503 aa28.2■■■□□ 2.1
VCP-202ENST00000417448 RRP7BPQ9NSQ0 103 aa28.2■■■□□ 2.1
VCP-202ENST00000417448 ABCC5O15440 1437 aa28.19■■■□□ 2.1
VCP-202ENST00000417448 SLAIN2Q9P270 581 aa28.19■■■□□ 2.1
VCP-202ENST00000417448 CHD2O14647 1828 aaKnown RBP28.19■■■□□ 2.1
VCP-202ENST00000417448 VPS8Q8N3P4 1428 aa28.17■■■□□ 2.1
VCP-202ENST00000417448 NOS1P29475 1434 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms