RNA–Protein interactions for RNA: ENST00000414861.6

RIF1-202, Transcript of replication timing regulatory factor 1, humanhuman

TSL 1 (best)

Gene RIF1, Length 2,534 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-202ENST00000414861 MROH1Q8NDA8 1641 aa14.31□□□□□ -0.12
RIF1-202ENST00000414861 BCORL1Q5H9F3 1711 aa14.3□□□□□ -0.12
RIF1-202ENST00000414861 NUP155O75694 1391 aa14.3□□□□□ -0.12
RIF1-202ENST00000414861 RNF17Q9BXT8 1623 aaKnown RBP14.29□□□□□ -0.12
RIF1-202ENST00000414861 IQGAP3Q86VI3 1631 aa14.29□□□□□ -0.12
RIF1-202ENST00000414861 FAM135AQ9P2D6 1515 aa14.29□□□□□ -0.12
RIF1-202ENST00000414861 ATP10AO60312 1499 aa14.29□□□□□ -0.12
RIF1-202ENST00000414861 PRDM15P57071 1507 aaPredicted RBP14.28□□□□□ -0.12
RIF1-202ENST00000414861 KIF3BO15066 747 aa14.28□□□□□ -0.12
RIF1-202ENST00000414861 REREQ9P2R6 1566 aa14.28□□□□□ -0.12
RIF1-202ENST00000414861 MPHOSPH9Q99550 1183 aa14.28□□□□□ -0.12
RIF1-202ENST00000414861 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.27□□□□□ -0.132e-6■■□□□ 11.7
RIF1-202ENST00000414861 VWDEQ8N2E2 1590 aa14.26□□□□□ -0.13
RIF1-202ENST00000414861 ACIN1Q9UKV3 1341 aaKnown RBP14.26□□□□□ -0.13
RIF1-202ENST00000414861 SLC4A1APQ9BWU0 796 aaKnown RBP14.25□□□□□ -0.13
RIF1-202ENST00000414861 FOXD1Q16676 465 aa14.24□□□□□ -0.13
RIF1-202ENST00000414861 CEP152O94986 1710 aa14.24□□□□□ -0.13
RIF1-202ENST00000414861 AGLP35573 1532 aa14.23□□□□□ -0.13
RIF1-202ENST00000414861 CLSPNQ9HAW4 1339 aa14.22□□□□□ -0.13
RIF1-202ENST00000414861 TET3O43151 1660 aa14.21□□□□□ -0.13
RIF1-202ENST00000414861 PKD2Q13563 968 aa14.21□□□□□ -0.13
RIF1-202ENST00000414861 GGT6Q6P531 493 aa14.2□□□□□ -0.14
RIF1-202ENST00000414861 E9PCH4 1651 aa14.2□□□□□ -0.14
RIF1-202ENST00000414861 ABCC3O15438 1527 aa14.19□□□□□ -0.14
RIF1-202ENST00000414861 KANK1Q14678 1352 aa14.19□□□□□ -0.14
RIF1-202ENST00000414861 ANKRD30BQ9BXX2 1392 aa14.18□□□□□ -0.14
RIF1-202ENST00000414861 LMTK2Q8IWU2 1503 aa14.18□□□□□ -0.14
RIF1-202ENST00000414861 SIN3AQ96ST3 1273 aa14.18□□□□□ -0.14
RIF1-202ENST00000414861 EFCAB6Q5THR3 1501 aa14.18□□□□□ -0.14
RIF1-202ENST00000414861 ZC3H13Q5T200 1668 aaKnown RBP14.16□□□□□ -0.14
RIF1-202ENST00000414861 CAMSAP1Q5T5Y3 1602 aa14.16□□□□□ -0.14
RIF1-202ENST00000414861 PLA2R1Q13018 1463 aa14.14□□□□□ -0.15
RIF1-202ENST00000414861 CFAP65Q6ZU64 1925 aaKnown RBP14.14□□□□□ -0.15
RIF1-202ENST00000414861 SPHKAPQ2M3C7 1700 aa14.13□□□□□ -0.15
RIF1-202ENST00000414861 MLECQ14165 292 aa14.13□□□□□ -0.15
RIF1-202ENST00000414861 WASHC2CQ9Y4E1 1318 aa14.13□□□□□ -0.15
RIF1-202ENST00000414861 CLTCQ00610 1675 aaKnown RBP14.13□□□□□ -0.15
RIF1-202ENST00000414861 NEUROD1Q13562 356 aa14.13□□□□□ -0.15
RIF1-202ENST00000414861 ARID4BQ4LE39 1312 aaPredicted RBP14.13□□□□□ -0.15
RIF1-202ENST00000414861 NPATQ14207 1427 aa14.12□□□□□ -0.15
RIF1-202ENST00000414861 ZEB1P37275 1124 aaPredicted RBP14.12□□□□□ -0.15
RIF1-202ENST00000414861 RPRD2Q5VT52 1461 aaKnown RBP14.1□□□□□ -0.15
RIF1-202ENST00000414861 TRPM2O94759 1503 aa14.09□□□□□ -0.15
RIF1-202ENST00000414861 PTPRTO14522 1441 aa14.09□□□□□ -0.15
RIF1-202ENST00000414861 UGGT1Q9NYU2 1555 aa14.07□□□□□ -0.16
RIF1-202ENST00000414861 ARHGAP31Q2M1Z3 1444 aa14.07□□□□□ -0.16
RIF1-202ENST00000414861 CLTCL1P53675 1640 aa14.07□□□□□ -0.16
RIF1-202ENST00000414861 FER1L4A9Z1Z3 1794 aa14.07□□□□□ -0.16
RIF1-202ENST00000414861 CCDC144AA2RUR9 1427 aa14.06□□□□□ -0.16
RIF1-202ENST00000414861 PREX1Q8TCU6 1659 aa14.06□□□□□ -0.16
RIF1-202ENST00000414861 PPP6R1Q9UPN7 881 aa14.06□□□□□ -0.16
RIF1-202ENST00000414861 SYNMO15061 1565 aa14.05□□□□□ -0.16
RIF1-202ENST00000414861 TONSLQ96HA7 1378 aa14.04□□□□□ -0.16
RIF1-202ENST00000414861 NOS1P29475 1434 aa14.04□□□□□ -0.16
RIF1-202ENST00000414861 MROH2AA6NES4 1674 aa14.03□□□□□ -0.16
RIF1-202ENST00000414861 MADDQ8WXG6 1647 aa14.03□□□□□ -0.16
RIF1-202ENST00000414861 CNTLNQ9NXG0 1405 aa14.02□□□□□ -0.16
RIF1-202ENST00000414861 ERVK-7P63135 1459 aa14.02□□□□□ -0.17
RIF1-202ENST00000414861 PIK3C2BO00750 1634 aa14.01□□□□□ -0.17
RIF1-202ENST00000414861 ADAMTSL3P82987 1691 aa14.01□□□□□ -0.17
RIF1-202ENST00000414861 ZMYM3Q14202 1370 aa14.01□□□□□ -0.17
RIF1-202ENST00000414861 FBXO31Q5XUX0 539 aaPredicted RBP14.01□□□□□ -0.17
RIF1-202ENST00000414861 C3P01024 1663 aa14□□□□□ -0.17
RIF1-202ENST00000414861 ESF1Q9H501 851 aaKnown RBP14□□□□□ -0.17
RIF1-202ENST00000414861 SPATA31D1Q6ZQQ2 1576 aa14□□□□□ -0.17
RIF1-202ENST00000414861 RIMS1Q86UR5 1692 aaKnown RBP13.99□□□□□ -0.17
RIF1-202ENST00000414861 KIF1BO60333 1816 aa13.99□□□□□ -0.17
RIF1-202ENST00000414861 SPATA31E1Q6ZUB1 1445 aa13.99□□□□□ -0.17
RIF1-202ENST00000414861 L3MBTL2Q969R5 705 aa13.99□□□□□ -0.17
RIF1-202ENST00000414861 TIMELESSQ9UNS1 1208 aa13.99□□□□□ -0.17
RIF1-202ENST00000414861 ADGRB3O60242 1522 aa13.97□□□□□ -0.17
RIF1-202ENST00000414861 MYO5BQ9ULV0 1848 aa13.96□□□□□ -0.17
RIF1-202ENST00000414861 PPP1R15AO75807 674 aaPredicted RBP13.95□□□□□ -0.18
RIF1-202ENST00000414861 CEBPAP49715 358 aaPredicted RBP13.95□□□□□ -0.18
RIF1-202ENST00000414861 RGL3Q3MIN7 710 aa13.95□□□□□ -0.18
RIF1-202ENST00000414861 NEURL4Q96JN8 1562 aa13.95□□□□□ -0.18
RIF1-202ENST00000414861 IDI1Q13907 227 aa13.93□□□□□ -0.18
RIF1-202ENST00000414861 IFT172Q9UG01 1749 aa13.93□□□□□ -0.18
RIF1-202ENST00000414861 TMEM131LA2VDJ0 1609 aa13.92□□□□□ -0.18
RIF1-202ENST00000414861 PLPPR3Q6T4P5 718 aa13.92□□□□□ -0.18
RIF1-202ENST00000414861 TNRQ92752 1358 aa13.92□□□□□ -0.18
RIF1-202ENST00000414861 DCAF11Q8TEB1 546 aa13.91□□□□□ -0.18
RIF1-202ENST00000414861 SLC52A1Q9NWF4 448 aa13.91□□□□□ -0.18
RIF1-202ENST00000414861 CHGAP10645 457 aaKnown RBP13.9□□□□□ -0.18
RIF1-202ENST00000414861 NBPF8Q3BBV2 869 aa13.9□□□□□ -0.18
RIF1-202ENST00000414861 PPLO60437 1756 aa13.9□□□□□ -0.18
RIF1-202ENST00000414861 KDM2AQ9Y2K7 1162 aa13.89□□□□□ -0.19
RIF1-202ENST00000414861 UHRF1BP1Q6BDS2 1440 aa13.88□□□□□ -0.19
RIF1-202ENST00000414861 ZNF326Q5BKZ1 582 aaKnown RBP13.88□□□□□ -0.19
RIF1-202ENST00000414861 PRAG1Q86YV5 1406 aa13.87□□□□□ -0.19
RIF1-202ENST00000414861 MYO3AQ8NEV4 1616 aa13.87□□□□□ -0.19
RIF1-202ENST00000414861 NEXMIFQ5QGS0 1516 aa13.87□□□□□ -0.19
RIF1-202ENST00000414861 PTPRMP28827 1452 aa13.87□□□□□ -0.19
RIF1-202ENST00000414861 UBR1Q8IWV7 1749 aa13.87□□□□□ -0.19
RIF1-202ENST00000414861 A2ML1A8K2U0 1454 aa13.86□□□□□ -0.19
RIF1-202ENST00000414861 MYOM2P54296 1465 aa13.85□□□□□ -0.19
RIF1-202ENST00000414861 NLRP1Q9C000 1473 aa13.85□□□□□ -0.19
RIF1-202ENST00000414861 TRPM1Q7Z4N2 1603 aa13.85□□□□□ -0.19
RIF1-202ENST00000414861 KDM5AP29375 1690 aaKnown RBP13.84□□□□□ -0.19
RIF1-202ENST00000414861 RALGAPBQ86X10 1494 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 1381.2 ms