RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 ERBINQ96RT1 1412 aa22.36■■□□□ 1.17
CHD1-202ENST00000414220 FAM135AQ9P2D6 1515 aa22.35■■□□□ 1.17
CHD1-202ENST00000414220 ADGRL2O95490 1459 aa22.34■■□□□ 1.17
CHD1-202ENST00000414220 EIF2AK4Q9P2K8 1649 aaKnown RBP22.33■■□□□ 1.17
CHD1-202ENST00000414220 KANK1Q14678 1352 aa22.32■■□□□ 1.16
CHD1-202ENST00000414220 RRBP1Q9P2E9 1410 aaKnown RBP22.31■■□□□ 1.16
CHD1-202ENST00000414220 MROH2AA6NES4 1674 aa22.31■■□□□ 1.16
CHD1-202ENST00000414220 KDM5DQ9BY66 1539 aa22.3■■□□□ 1.16
CHD1-202ENST00000414220 NPATQ14207 1427 aa22.3■■□□□ 1.16
CHD1-202ENST00000414220 UHRF1BP1Q6BDS2 1440 aa22.3■■□□□ 1.16
CHD1-202ENST00000414220 CLTCQ00610 1675 aaKnown RBP22.3■■□□□ 1.16
CHD1-202ENST00000414220 ROCK1Q13464 1354 aa22.29■■□□□ 1.16
CHD1-202ENST00000414220 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.29■■□□□ 1.16
CHD1-202ENST00000414220 C3P01024 1663 aa22.29■■□□□ 1.16
CHD1-202ENST00000414220 SETD1BQ9UPS6 1966 aaKnown RBP22.27■■□□□ 1.16
CHD1-202ENST00000414220 ANKRD50Q9ULJ7 1429 aa22.27■■□□□ 1.16
CHD1-202ENST00000414220 RNF17Q9BXT8 1623 aaKnown RBP22.25■■□□□ 1.15
CHD1-202ENST00000414220 LMTK3Q96Q04 1460 aa22.25■■□□□ 1.15
CHD1-202ENST00000414220 PTPRKQ15262 1439 aa22.24■■□□□ 1.15
CHD1-202ENST00000414220 PREX1Q8TCU6 1659 aa22.22■■□□□ 1.15
CHD1-202ENST00000414220 HSPA2P54652 639 aa22.21■■□□□ 1.15
CHD1-202ENST00000414220 PZPP20742 1482 aa22.21■■□□□ 1.15
CHD1-202ENST00000414220 ZC3H13Q5T200 1668 aaKnown RBP22.2■■□□□ 1.14
CHD1-202ENST00000414220 ABCC3O15438 1527 aa22.19■■□□□ 1.14
CHD1-202ENST00000414220 PRDM15P57071 1507 aaPredicted RBP22.17■■□□□ 1.14
CHD1-202ENST00000414220 TNRQ92752 1358 aa22.17■■□□□ 1.14
CHD1-202ENST00000414220 FBXO31Q5XUX0 539 aaPredicted RBP22.17■■□□□ 1.14
CHD1-202ENST00000414220 DMRT2Q9Y5R5 561 aa22.15■■□□□ 1.14
CHD1-202ENST00000414220 MROH1Q8NDA8 1641 aa22.14■■□□□ 1.14
CHD1-202ENST00000414220 ARHGAP31Q2M1Z3 1444 aa22.13■■□□□ 1.13
CHD1-202ENST00000414220 DEPDC5O75140 1603 aa22.13■■□□□ 1.13
CHD1-202ENST00000414220 LMTK2Q8IWU2 1503 aa22.09■■□□□ 1.13
CHD1-202ENST00000414220 THEMISQ8N1K5 641 aaPredicted RBP22.08■■□□□ 1.13
CHD1-202ENST00000414220 CAMSAP1Q5T5Y3 1602 aa22.08■■□□□ 1.13
CHD1-202ENST00000414220 CEP152O94986 1710 aa22.08■■□□□ 1.12
CHD1-202ENST00000414220 NLRP1Q9C000 1473 aa22.08■■□□□ 1.12
CHD1-202ENST00000414220 NUP155O75694 1391 aa22.07■■□□□ 1.12
CHD1-202ENST00000414220 A2ML1A8K2U0 1454 aa22.07■■□□□ 1.12
CHD1-202ENST00000414220 ERVK-7P63135 1459 aa22.06■■□□□ 1.12
CHD1-202ENST00000414220 MYO3AQ8NEV4 1616 aa22.06■■□□□ 1.12
CHD1-202ENST00000414220 VWDEQ8N2E2 1590 aa22.05■■□□□ 1.12
CHD1-202ENST00000414220 CEP170BQ9Y4F5 1589 aaPredicted RBP22.05■■□□□ 1.12
CHD1-202ENST00000414220 PKD2Q13563 968 aa22.04■■□□□ 1.12
CHD1-202ENST00000414220 NAIPQ13075 1403 aa22.04■■□□□ 1.12
CHD1-202ENST00000414220 SPATA31D1Q6ZQQ2 1576 aa22.04■■□□□ 1.12
CHD1-202ENST00000414220 STAG3Q9UJ98 1225 aa22.03■■□□□ 1.12
CHD1-202ENST00000414220 HFM1A2PYH4 1435 aa22.03■■□□□ 1.12
CHD1-202ENST00000414220 ACIN1Q9UKV3 1341 aaKnown RBP22.02■■□□□ 1.12
CHD1-202ENST00000414220 UNC13BO14795 1591 aa22.01■■□□□ 1.11
CHD1-202ENST00000414220 TRIM52Q96A61 297 aa22.01■■□□□ 1.11
CHD1-202ENST00000414220 RPRD2Q5VT52 1461 aaKnown RBP22.01■■□□□ 1.11
CHD1-202ENST00000414220 SLC52A1Q9NWF4 448 aa22■■□□□ 1.11
CHD1-202ENST00000414220 ZNF142P52746 1687 aaPredicted RBP22■■□□□ 1.11
CHD1-202ENST00000414220 PLA2R1Q13018 1463 aa21.99■■□□□ 1.11
CHD1-202ENST00000414220 EFCAB6Q5THR3 1501 aa21.99■■□□□ 1.11
CHD1-202ENST00000414220 ANKLE2Q86XL3 938 aa21.98■■□□□ 1.11
CHD1-202ENST00000414220 UGGT1Q9NYU2 1555 aa21.98■■□□□ 1.11
CHD1-202ENST00000414220 TET3O43151 1660 aa21.96■■□□□ 1.11
CHD1-202ENST00000414220 PTPRTO14522 1441 aa21.96■■□□□ 1.11
CHD1-202ENST00000414220 NCKAP5LQ9HCH0 1330 aa21.95■■□□□ 1.1
CHD1-202ENST00000414220 CFAP65Q6ZU64 1925 aaKnown RBP21.94■■□□□ 1.1
CHD1-202ENST00000414220 IQGAP3Q86VI3 1631 aa21.94■■□□□ 1.1
CHD1-202ENST00000414220 GCC2Q8IWJ2 1684 aa21.94■■□□□ 1.1
CHD1-202ENST00000414220 NOS1P29475 1434 aa21.93■■□□□ 1.1
CHD1-202ENST00000414220 IDI1Q13907 227 aa21.93■■□□□ 1.1
CHD1-202ENST00000414220 EID1Q9Y6B2 187 aa21.91■■□□□ 1.1
CHD1-202ENST00000414220 HDGFP51858 240 aaKnown RBP21.89■■□□□ 1.09
CHD1-202ENST00000414220 SLC4A1APQ9BWU0 796 aaKnown RBP21.89■■□□□ 1.09
CHD1-202ENST00000414220 STRCQ7RTU9 1775 aa21.89■■□□□ 1.09
CHD1-202ENST00000414220 SETD5Q9C0A6 1442 aa21.88■■□□□ 1.09
CHD1-202ENST00000414220 CHGAP10645 457 aaKnown RBP21.86■■□□□ 1.09
CHD1-202ENST00000414220 TXNDC2Q86VQ3 553 aa21.86■■□□□ 1.09
CHD1-202ENST00000414220 SYNMO15061 1565 aa21.82■■□□□ 1.08
CHD1-202ENST00000414220 E9PCH4 1651 aa21.82■■□□□ 1.08
CHD1-202ENST00000414220 TMEM2Q9UHN6 1383 aa21.82■■□□□ 1.08
CHD1-202ENST00000414220 PIK3C2BO00750 1634 aa21.81■■□□□ 1.08
CHD1-202ENST00000414220 UBR1Q8IWV7 1749 aa21.81■■□□□ 1.08
CHD1-202ENST00000414220 NPHP4O75161 1426 aaPredicted RBP21.8■■□□□ 1.08
CHD1-202ENST00000414220 KDM5AP29375 1690 aaKnown RBP21.79■■□□□ 1.08
CHD1-202ENST00000414220 SCAF11Q99590 1463 aaKnown RBP21.78■■□□□ 1.08
CHD1-202ENST00000414220 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.78■■□□□ 1.08
CHD1-202ENST00000414220 MPHOSPH9Q99550 1183 aa21.78■■□□□ 1.08
CHD1-202ENST00000414220 ADGRB3O60242 1522 aa21.78■■□□□ 1.08
CHD1-202ENST00000414220 SLIT1O75093 1534 aa21.78■■□□□ 1.08
CHD1-202ENST00000414220 MED14O60244 1454 aa21.77■■□□□ 1.08
CHD1-202ENST00000414220 ARHGAP23Q9P227 1491 aa21.77■■□□□ 1.08
CHD1-202ENST00000414220 HRCP23327 699 aa21.77■■□□□ 1.08
CHD1-202ENST00000414220 CERKQ8TCT0 537 aa21.77■■□□□ 1.08
CHD1-202ENST00000414220 RAB3GAP2Q9H2M9 1393 aa21.76■■□□□ 1.07
CHD1-202ENST00000414220 PPP1R15AO75807 674 aaPredicted RBP21.76■■□□□ 1.07
CHD1-202ENST00000414220 POLR1AO95602 1720 aaPredicted RBP21.76■■□□□ 1.07
CHD1-202ENST00000414220 LTKP29376 864 aa21.76■■□□□ 1.07
CHD1-202ENST00000414220 BCANQ96GW7 911 aa21.76■■□□□ 1.07
CHD1-202ENST00000414220 ZNF326Q5BKZ1 582 aaKnown RBP21.73■■□□□ 1.07
CHD1-202ENST00000414220 NEURL4Q96JN8 1562 aa21.71■■□□□ 1.07
CHD1-202ENST00000414220 ZNF335Q9H4Z2 1342 aaPredicted RBP21.71■■□□□ 1.07
CHD1-202ENST00000414220 SPHKAPQ2M3C7 1700 aa21.7■■□□□ 1.06
CHD1-202ENST00000414220 RIMS2Q9UQ26 1411 aa21.7■■□□□ 1.06
CHD1-202ENST00000414220 TRPM2O94759 1503 aa21.69■■□□□ 1.06
CHD1-202ENST00000414220 TMEM131LA2VDJ0 1609 aa21.68■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms