RNA–Protein interactions for RNA: ENST00000413731.1

UPF3AP1-201, Transcript of UPF3A pseudogene 1, humanhuman

BASIC

Gene UPF3AP1, Length 1,126 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AP1-201ENST00000413731 ZMYM3Q14202 1370 aa13.44□□□□□ -0.26
UPF3AP1-201ENST00000413731 SPAG9O60271 1321 aaKnown RBP13.43□□□□□ -0.26
UPF3AP1-201ENST00000413731 PLA2R1Q13018 1463 aa13.43□□□□□ -0.26
UPF3AP1-201ENST00000413731 PLEKHH2Q8IVE3 1493 aa13.43□□□□□ -0.26
UPF3AP1-201ENST00000413731 POLR1AO95602 1720 aaPredicted RBP13.42□□□□□ -0.26
UPF3AP1-201ENST00000413731 PTPRKQ15262 1439 aa13.42□□□□□ -0.26
UPF3AP1-201ENST00000413731 KIAA1107Q9UPP5 1409 aa13.42□□□□□ -0.26
UPF3AP1-201ENST00000413731 TCOF1Q13428 1488 aaKnown RBP13.42□□□□□ -0.26
UPF3AP1-201ENST00000413731 SOCS7O14512 581 aa13.41□□□□□ -0.26
UPF3AP1-201ENST00000413731 HNRNPMP52272 730 aaKnown RBP eCLIP13.41□□□□□ -0.26
UPF3AP1-201ENST00000413731 ZNF335Q9H4Z2 1342 aaPredicted RBP13.4□□□□□ -0.26
UPF3AP1-201ENST00000413731 NCKAP5LQ9HCH0 1330 aa13.4□□□□□ -0.26
UPF3AP1-201ENST00000413731 CCNB3Q8WWL7 1395 aa13.4□□□□□ -0.26
UPF3AP1-201ENST00000413731 EHBP1L1Q8N3D4 1523 aa13.39□□□□□ -0.27
UPF3AP1-201ENST00000413731 DNMT1P26358 1616 aaKnown RBP13.39□□□□□ -0.27
UPF3AP1-201ENST00000413731 NEURL4Q96JN8 1562 aa13.37□□□□□ -0.27
UPF3AP1-201ENST00000413731 CFDP1Q9UEE9 299 aaPredicted RBP13.37□□□□□ -0.27
UPF3AP1-201ENST00000413731 A2ML1A8K2U0 1454 aa13.36□□□□□ -0.27
UPF3AP1-201ENST00000413731 MTUS2Q5JR59 1369 aa13.36□□□□□ -0.27
UPF3AP1-201ENST00000413731 MBD5Q9P267 1494 aa13.36□□□□□ -0.27
UPF3AP1-201ENST00000413731 DCAF8L1A6NGE4 600 aa13.35□□□□□ -0.27
UPF3AP1-201ENST00000413731 GGT6Q6P531 493 aa13.34□□□□□ -0.27
UPF3AP1-201ENST00000413731 ZNF644Q9H582 1327 aaPredicted RBP13.34□□□□□ -0.27
UPF3AP1-201ENST00000413731 KDM5DQ9BY66 1539 aa13.34□□□□□ -0.27
UPF3AP1-201ENST00000413731 PKD2Q13563 968 aa13.33□□□□□ -0.28
UPF3AP1-201ENST00000413731 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
UPF3AP1-201ENST00000413731 UBAP1LF5GYI3 381 aa13.32□□□□□ -0.28
UPF3AP1-201ENST00000413731 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.32□□□□□ -0.28
UPF3AP1-201ENST00000413731 CEP162Q5TB80 1403 aa13.31□□□□□ -0.28
UPF3AP1-201ENST00000413731 CAMSAP2Q08AD1 1489 aa13.31□□□□□ -0.28
UPF3AP1-201ENST00000413731 FAM135AQ9P2D6 1515 aa13.31□□□□□ -0.28
UPF3AP1-201ENST00000413731 RTEL1-TNFRSF6BF6WH68 1400 aa13.3□□□□□ -0.28
UPF3AP1-201ENST00000413731 PZPP20742 1482 aa13.3□□□□□ -0.28
UPF3AP1-201ENST00000413731 CCDC141Q6ZP82 1450 aa13.3□□□□□ -0.28
UPF3AP1-201ENST00000413731 MED1Q15648 1581 aaPredicted RBP13.3□□□□□ -0.28
UPF3AP1-201ENST00000413731 TNRQ92752 1358 aa13.29□□□□□ -0.28
UPF3AP1-201ENST00000413731 CPS1P31327 1500 aa13.29□□□□□ -0.28
UPF3AP1-201ENST00000413731 VWDEQ8N2E2 1590 aa13.28□□□□□ -0.28
UPF3AP1-201ENST00000413731 DHX29Q7Z478 1369 aaKnown RBP13.28□□□□□ -0.28
UPF3AP1-201ENST00000413731 SAMD1Q6SPF0 538 aaPredicted RBP13.27□□□□□ -0.29
UPF3AP1-201ENST00000413731 NCOA2Q15596 1464 aa13.27□□□□□ -0.29
UPF3AP1-201ENST00000413731 RNF17Q9BXT8 1623 aaKnown RBP13.27□□□□□ -0.29
UPF3AP1-201ENST00000413731 IQGAP1P46940 1657 aa13.27□□□□□ -0.29
UPF3AP1-201ENST00000413731 STRCP1A6NGW2 1772 aa13.27□□□□□ -0.29
UPF3AP1-201ENST00000413731 DEPDC5O75140 1603 aa13.26□□□□□ -0.29
UPF3AP1-201ENST00000413731 ARHGEF5Q12774 1597 aa13.26□□□□□ -0.29
UPF3AP1-201ENST00000413731 ALKQ9UM73 1620 aa13.26□□□□□ -0.29
UPF3AP1-201ENST00000413731 ZC3H13Q5T200 1668 aaKnown RBP13.25□□□□□ -0.29
UPF3AP1-201ENST00000413731 SHANK2Q9UPX8 1470 aa13.25□□□□□ -0.29
UPF3AP1-201ENST00000413731 FBXO31Q5XUX0 539 aaPredicted RBP13.25□□□□□ -0.29
UPF3AP1-201ENST00000413731 CEP152O94986 1710 aa13.25□□□□□ -0.29
UPF3AP1-201ENST00000413731 UGGT1Q9NYU2 1555 aa13.24□□□□□ -0.29
UPF3AP1-201ENST00000413731 NLRP1Q9C000 1473 aa13.23□□□□□ -0.29
UPF3AP1-201ENST00000413731 CFAP65Q6ZU64 1925 aaKnown RBP13.23□□□□□ -0.29
UPF3AP1-201ENST00000413731 KIF3BO15066 747 aa13.23□□□□□ -0.29
UPF3AP1-201ENST00000413731 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 MROH1Q8NDA8 1641 aa13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 EIF2AK4Q9P2K8 1649 aaKnown RBP13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 HSPA1LP34931 641 aa13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 SYNMO15061 1565 aa13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 ABCC3O15438 1527 aa13.22□□□□□ -0.29
UPF3AP1-201ENST00000413731 MAST1Q9Y2H9 1570 aa13.21□□□□□ -0.29
UPF3AP1-201ENST00000413731 PIP4K2BP78356 416 aa13.21□□□□□ -0.29
UPF3AP1-201ENST00000413731 MED14O60244 1454 aa13.21□□□□□ -0.3
UPF3AP1-201ENST00000413731 NPHP4O75161 1426 aaPredicted RBP13.21□□□□□ -0.3
UPF3AP1-201ENST00000413731 UBR1Q8IWV7 1749 aa13.2□□□□□ -0.3
UPF3AP1-201ENST00000413731 MIA2Q96PC5 1412 aa13.2□□□□□ -0.3
UPF3AP1-201ENST00000413731 WASHC2CQ9Y4E1 1318 aa13.18□□□□□ -0.3
UPF3AP1-201ENST00000413731 ERVK-7P63135 1459 aa13.18□□□□□ -0.3
UPF3AP1-201ENST00000413731 XIRP1Q702N8 1843 aaKnown RBP13.17□□□□□ -0.3
UPF3AP1-201ENST00000413731 CROCC2H7BZ55 1655 aa13.16□□□□□ -0.3
UPF3AP1-201ENST00000413731 TOM1O60784 492 aa13.16□□□□□ -0.3
UPF3AP1-201ENST00000413731 ANKLE2Q86XL3 938 aa13.16□□□□□ -0.3
UPF3AP1-201ENST00000413731 LRRC7Q96NW7 1537 aa13.15□□□□□ -0.3
UPF3AP1-201ENST00000413731 LRRC9Q6ZRR7 1453 aa13.15□□□□□ -0.3
UPF3AP1-201ENST00000413731 RSPH4AQ5TD94 716 aa13.13□□□□□ -0.31
UPF3AP1-201ENST00000413731 THEMISQ8N1K5 641 aaPredicted RBP13.13□□□□□ -0.31
UPF3AP1-201ENST00000413731 PRDM15P57071 1507 aaPredicted RBP13.13□□□□□ -0.31
UPF3AP1-201ENST00000413731 SCAF11Q99590 1463 aaKnown RBP13.11□□□□□ -0.31
UPF3AP1-201ENST00000413731 U3KPZ7 1027 aaPredicted RBP13.11□□□□□ -0.31
UPF3AP1-201ENST00000413731 DUOX2Q9NRD8 1548 aa13.11□□□□□ -0.31
UPF3AP1-201ENST00000413731 VPS8Q8N3P4 1428 aa13.11□□□□□ -0.31
UPF3AP1-201ENST00000413731 PIK3C2BO00750 1634 aa13.1□□□□□ -0.31
UPF3AP1-201ENST00000413731 TSPY4P0CV99 314 aa13.1□□□□□ -0.31
UPF3AP1-201ENST00000413731 TSPY10P0CW01 314 aa13.1□□□□□ -0.31
UPF3AP1-201ENST00000413731 ARHGAP23Q9P227 1491 aa13.1□□□□□ -0.31
UPF3AP1-201ENST00000413731 SLIT1O75093 1534 aa13.09□□□□□ -0.31
UPF3AP1-201ENST00000413731 MYOM3Q5VTT5 1437 aa13.09□□□□□ -0.31
UPF3AP1-201ENST00000413731 FBXO3Q9UK99 471 aa13.09□□□□□ -0.31
UPF3AP1-201ENST00000413731 MAP3K1Q13233 1512 aa13.06□□□□□ -0.32
UPF3AP1-201ENST00000413731 PTPN23Q9H3S7 1636 aa13.06□□□□□ -0.32
UPF3AP1-201ENST00000413731 KDM5AP29375 1690 aaKnown RBP13.05□□□□□ -0.32
UPF3AP1-201ENST00000413731 ARHGAP31Q2M1Z3 1444 aa13.05□□□□□ -0.32
UPF3AP1-201ENST00000413731 ERBINQ96RT1 1412 aa13.05□□□□□ -0.32
UPF3AP1-201ENST00000413731 LOC105371045A0A1W2PR82 267 aa13.04□□□□□ -0.32
UPF3AP1-201ENST00000413731 KANK4Q5T7N3 995 aaPredicted RBP13.04□□□□□ -0.32
UPF3AP1-201ENST00000413731 ZNF219Q9P2Y4 722 aaPredicted RBP13.04□□□□□ -0.32
UPF3AP1-201ENST00000413731 KIF15Q9NS87 1388 aa13.04□□□□□ -0.32
UPF3AP1-201ENST00000413731 LTKP29376 864 aa13.02□□□□□ -0.33
UPF3AP1-201ENST00000413731 ABCC5O15440 1437 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms