RNA–Protein interactions for RNA: ENST00000409727.5

CHMP3-204, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2 BASIC

Gene CHMP3, Length 1,851 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-204ENST00000409727 ADRA2BP18089 450 aa18.07■□□□□ 0.48
CHMP3-204ENST00000409727 UNC13BO14795 1591 aa18.07■□□□□ 0.48
CHMP3-204ENST00000409727 KDM5DQ9BY66 1539 aa18.07■□□□□ 0.48
CHMP3-204ENST00000409727 FAM135AQ9P2D6 1515 aa18.06■□□□□ 0.48
CHMP3-204ENST00000409727 TRHP20396 242 aaPredicted RBP18.06■□□□□ 0.48
CHMP3-204ENST00000409727 DHX29Q7Z478 1369 aaKnown RBP18.06■□□□□ 0.48
CHMP3-204ENST00000409727 KIF3BO15066 747 aa18.05■□□□□ 0.48
CHMP3-204ENST00000409727 FRMPD1Q5SYB0 1578 aa18.05■□□□□ 0.48
CHMP3-204ENST00000409727 A2MP01023 1474 aa18.04■□□□□ 0.48
CHMP3-204ENST00000409727 ABCA6Q8N139 1617 aa18.03■□□□□ 0.48
CHMP3-204ENST00000409727 ANKRD30BQ9BXX2 1392 aa18.03■□□□□ 0.48
CHMP3-204ENST00000409727 TONSLQ96HA7 1378 aa18.03■□□□□ 0.48
CHMP3-204ENST00000409727 YEATS2Q9ULM3 1422 aa18.02■□□□□ 0.47
CHMP3-204ENST00000409727 MAGI2Q86UL8 1455 aa18■□□□□ 0.47
CHMP3-204ENST00000409727 IQGAP3Q86VI3 1631 aa18■□□□□ 0.47
CHMP3-204ENST00000409727 DIP2CQ9Y2E4 1556 aa17.99■□□□□ 0.47
CHMP3-204ENST00000409727 EIF2AK4Q9P2K8 1649 aaKnown RBP17.99■□□□□ 0.47
CHMP3-204ENST00000409727 COL17A1Q9UMD9 1497 aaPredicted RBP17.98■□□□□ 0.47
CHMP3-204ENST00000409727 DEPDC5O75140 1603 aa17.97■□□□□ 0.47
CHMP3-204ENST00000409727 ZMYM4Q5VZL5 1548 aa17.96■□□□□ 0.47
CHMP3-204ENST00000409727 GGT6Q6P531 493 aa17.96■□□□□ 0.47
CHMP3-204ENST00000409727 TIMELESSQ9UNS1 1208 aa17.96■□□□□ 0.47
CHMP3-204ENST00000409727 KANK1Q14678 1352 aa17.96■□□□□ 0.47
CHMP3-204ENST00000409727 RPRD2Q5VT52 1461 aaKnown RBP17.94■□□□□ 0.46
CHMP3-204ENST00000409727 MROH1Q8NDA8 1641 aa17.94■□□□□ 0.46
CHMP3-204ENST00000409727 PRDM15P57071 1507 aaPredicted RBP17.93■□□□□ 0.46
CHMP3-204ENST00000409727 PPP1R15AO75807 674 aaPredicted RBP17.91■□□□□ 0.46
CHMP3-204ENST00000409727 RNF17Q9BXT8 1623 aaKnown RBP17.9■□□□□ 0.46
CHMP3-204ENST00000409727 L3MBTL2Q969R5 705 aa17.9■□□□□ 0.46
CHMP3-204ENST00000409727 VWDEQ8N2E2 1590 aa17.89■□□□□ 0.45
CHMP3-204ENST00000409727 ATP10AO60312 1499 aa17.89■□□□□ 0.45
CHMP3-204ENST00000409727 E9PCH4 1651 aa17.88■□□□□ 0.45
CHMP3-204ENST00000409727 PLA2R1Q13018 1463 aa17.87■□□□□ 0.45
CHMP3-204ENST00000409727 TET3O43151 1660 aa17.87■□□□□ 0.45
CHMP3-204ENST00000409727 CEP152O94986 1710 aa17.87■□□□□ 0.45
CHMP3-204ENST00000409727 CCDC144AA2RUR9 1427 aa17.86■□□□□ 0.45
CHMP3-204ENST00000409727 BCORL1Q5H9F3 1711 aa17.86■□□□□ 0.45
CHMP3-204ENST00000409727 WASHC2CQ9Y4E1 1318 aa17.86■□□□□ 0.45
CHMP3-204ENST00000409727 ZNF316A6NFI3 1004 aaPredicted RBP17.84■□□□□ 0.45
CHMP3-204ENST00000409727 ARHGEF40Q8TER5 1519 aa17.83■□□□□ 0.45
CHMP3-204ENST00000409727 EFCAB6Q5THR3 1501 aa17.82■□□□□ 0.44
CHMP3-204ENST00000409727 MLECQ14165 292 aa17.82■□□□□ 0.44
CHMP3-204ENST00000409727 ABCC3O15438 1527 aa17.81■□□□□ 0.44
CHMP3-204ENST00000409727 SIGLEC1Q9BZZ2 1709 aa17.8■□□□□ 0.44
CHMP3-204ENST00000409727 LMTK2Q8IWU2 1503 aa17.8■□□□□ 0.44
CHMP3-204ENST00000409727 RGL3Q3MIN7 710 aa17.8■□□□□ 0.44
CHMP3-204ENST00000409727 ZNF326Q5BKZ1 582 aaKnown RBP17.8■□□□□ 0.44
CHMP3-204ENST00000409727 SPHKAPQ2M3C7 1700 aa17.79■□□□□ 0.44
CHMP3-204ENST00000409727 REREQ9P2R6 1566 aa17.79■□□□□ 0.44
CHMP3-204ENST00000409727 KDM2AQ9Y2K7 1162 aa17.78■□□□□ 0.44
CHMP3-204ENST00000409727 TRPM2O94759 1503 aa17.77■□□□□ 0.44
CHMP3-204ENST00000409727 PIAS4Q8N2W9 510 aaPredicted RBP17.77■□□□□ 0.43
CHMP3-204ENST00000409727 CAMSAP1Q5T5Y3 1602 aa17.77■□□□□ 0.43
CHMP3-204ENST00000409727 PTPRTO14522 1441 aa17.77■□□□□ 0.43
CHMP3-204ENST00000409727 NPATQ14207 1427 aa17.77■□□□□ 0.43
CHMP3-204ENST00000409727 ARID4BQ4LE39 1312 aaPredicted RBP17.77■□□□□ 0.43
CHMP3-204ENST00000409727 NBPF8Q3BBV2 869 aa17.76■□□□□ 0.43
CHMP3-204ENST00000409727 DCAF11Q8TEB1 546 aa17.76■□□□□ 0.43
CHMP3-204ENST00000409727 AGLP35573 1532 aa17.76■□□□□ 0.43
CHMP3-204ENST00000409727 CFAP65Q6ZU64 1925 aaKnown RBP17.75■□□□□ 0.43
CHMP3-204ENST00000409727 UGGT1Q9NYU2 1555 aa17.75■□□□□ 0.43
CHMP3-204ENST00000409727 CLTCL1P53675 1640 aa17.75■□□□□ 0.43
CHMP3-204ENST00000409727 HIRIP3Q9BW71 556 aaPredicted RBP17.73■□□□□ 0.43
CHMP3-204ENST00000409727 ZC3H13Q5T200 1668 aaKnown RBP17.73■□□□□ 0.43
CHMP3-204ENST00000409727 CLTCQ00610 1675 aaKnown RBP17.68■□□□□ 0.42
CHMP3-204ENST00000409727 SPATA31E1Q6ZUB1 1445 aa17.68■□□□□ 0.42
CHMP3-204ENST00000409727 CHGAP10645 457 aaKnown RBP17.68■□□□□ 0.42
CHMP3-204ENST00000409727 ESF1Q9H501 851 aaKnown RBP17.67■□□□□ 0.42
CHMP3-204ENST00000409727 ARHGAP31Q2M1Z3 1444 aa17.66■□□□□ 0.42
CHMP3-204ENST00000409727 CNTLNQ9NXG0 1405 aa17.66■□□□□ 0.42
CHMP3-204ENST00000409727 FBXO31Q5XUX0 539 aaPredicted RBP17.66■□□□□ 0.42
CHMP3-204ENST00000409727 DIEXFQ68CQ4 756 aaKnown RBP17.65■□□□□ 0.42
CHMP3-204ENST00000409727 UHRF1BP1Q6BDS2 1440 aa17.64■□□□□ 0.42
CHMP3-204ENST00000409727 NOS1P29475 1434 aa17.64■□□□□ 0.41
CHMP3-204ENST00000409727 SYNMO15061 1565 aa17.63■□□□□ 0.41
CHMP3-204ENST00000409727 KIF1BO60333 1816 aa17.63■□□□□ 0.41
CHMP3-204ENST00000409727 PRAG1Q86YV5 1406 aa17.62■□□□□ 0.41
CHMP3-204ENST00000409727 PREX1Q8TCU6 1659 aa17.62■□□□□ 0.41
CHMP3-204ENST00000409727 MROH2AA6NES4 1674 aa17.61■□□□□ 0.41
CHMP3-204ENST00000409727 HSPA5P11021 654 aaKnown RBP17.61■□□□□ 0.41
CHMP3-204ENST00000409727 EIF4G2P78344 907 aaKnown RBP eCLIP17.61■□□□□ 0.41
CHMP3-204ENST00000409727 IDI1Q13907 227 aa17.59■□□□□ 0.41
CHMP3-204ENST00000409727 ERVK-7P63135 1459 aa17.59■□□□□ 0.41
CHMP3-204ENST00000409727 RALGAPBQ86X10 1494 aa17.59■□□□□ 0.41
CHMP3-204ENST00000409727 ZMYM3Q14202 1370 aa17.59■□□□□ 0.41
CHMP3-204ENST00000409727 ROCK2O75116 1388 aaKnown RBP17.58■□□□□ 0.4
CHMP3-204ENST00000409727 ADGRB3O60242 1522 aa17.58■□□□□ 0.4
CHMP3-204ENST00000409727 CARD11Q9BXL7 1154 aa17.58■□□□□ 0.4
CHMP3-204ENST00000409727 PIK3C2BO00750 1634 aa17.57■□□□□ 0.4
CHMP3-204ENST00000409727 NBPF1Q3BBV0 1214 aa17.56■□□□□ 0.4
CHMP3-204ENST00000409727 SLC52A1Q9NWF4 448 aa17.56■□□□□ 0.4
CHMP3-204ENST00000409727 NEURL4Q96JN8 1562 aa17.55■□□□□ 0.4
CHMP3-204ENST00000409727 TRPM1Q7Z4N2 1603 aa17.55■□□□□ 0.4
CHMP3-204ENST00000409727 USP47Q96K76 1375 aa17.54■□□□□ 0.4
CHMP3-204ENST00000409727 MADDQ8WXG6 1647 aa17.53■□□□□ 0.4
CHMP3-204ENST00000409727 NUTM2DQ5VT03 806 aaPredicted RBP17.53■□□□□ 0.4
CHMP3-204ENST00000409727 STAG3Q9UJ98 1225 aa17.52■□□□□ 0.4
CHMP3-204ENST00000409727 ADGRF5Q8IZF2 1346 aa17.52■□□□□ 0.4
CHMP3-204ENST00000409727 SPATA31D1Q6ZQQ2 1576 aa17.52■□□□□ 0.4
CHMP3-204ENST00000409727 CEBPAP49715 358 aaPredicted RBP17.52■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms