RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ERBINQ96RT1 1412 aa19.9■□□□□ 0.78
LIMS1-204ENST00000409441 REREQ9P2R6 1566 aa19.9■□□□□ 0.78
LIMS1-204ENST00000409441 GGT6Q6P531 493 aa19.89■□□□□ 0.77
LIMS1-204ENST00000409441 MLECQ14165 292 aa19.88■□□□□ 0.77
LIMS1-204ENST00000409441 CCER1Q8TC90 406 aaPredicted RBP19.88■□□□□ 0.77
LIMS1-204ENST00000409441 AGLP35573 1532 aa19.87■□□□□ 0.77
LIMS1-204ENST00000409441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.86■□□□□ 0.77
LIMS1-204ENST00000409441 RAB3GAP2Q9H2M9 1393 aa19.85■□□□□ 0.77
LIMS1-204ENST00000409441 SIGLEC1Q9BZZ2 1709 aa19.85■□□□□ 0.77
LIMS1-204ENST00000409441 GCC2Q8IWJ2 1684 aa19.83■□□□□ 0.77
LIMS1-204ENST00000409441 TRIM52Q96A61 297 aa19.83■□□□□ 0.76
LIMS1-204ENST00000409441 EIF2AK4Q9P2K8 1649 aaKnown RBP19.81■□□□□ 0.76
LIMS1-204ENST00000409441 PPP6R1Q9UPN7 881 aa19.8■□□□□ 0.76
LIMS1-204ENST00000409441 ACIN1Q9UKV3 1341 aaKnown RBP19.8■□□□□ 0.76
LIMS1-204ENST00000409441 NUP155O75694 1391 aa19.79■□□□□ 0.76
LIMS1-204ENST00000409441 WASHC2CQ9Y4E1 1318 aa19.78■□□□□ 0.76
LIMS1-204ENST00000409441 BCORL1Q5H9F3 1711 aa19.78■□□□□ 0.76
LIMS1-204ENST00000409441 ESF1Q9H501 851 aaKnown RBP19.77■□□□□ 0.76
LIMS1-204ENST00000409441 KANK1Q14678 1352 aa19.77■□□□□ 0.76
LIMS1-204ENST00000409441 RNF17Q9BXT8 1623 aaKnown RBP19.74■□□□□ 0.75
LIMS1-204ENST00000409441 DEPDC5O75140 1603 aa19.72■□□□□ 0.75
LIMS1-204ENST00000409441 MROH1Q8NDA8 1641 aa19.72■□□□□ 0.75
LIMS1-204ENST00000409441 UNC13BO14795 1591 aa19.72■□□□□ 0.75
LIMS1-204ENST00000409441 MPHOSPH9Q99550 1183 aa19.71■□□□□ 0.75
LIMS1-204ENST00000409441 SLC4A1APQ9BWU0 796 aaKnown RBP19.71■□□□□ 0.75
LIMS1-204ENST00000409441 PRDM15P57071 1507 aaPredicted RBP19.71■□□□□ 0.75
LIMS1-204ENST00000409441 ADRA2BP18089 450 aa19.69■□□□□ 0.74
LIMS1-204ENST00000409441 VWDEQ8N2E2 1590 aa19.68■□□□□ 0.74
LIMS1-204ENST00000409441 KDM4FA0A1W2PPD8 638 aa19.67■□□□□ 0.74
LIMS1-204ENST00000409441 ABCC3O15438 1527 aa19.67■□□□□ 0.74
LIMS1-204ENST00000409441 KDM5DQ9BY66 1539 aa19.67■□□□□ 0.74
LIMS1-204ENST00000409441 FAM135AQ9P2D6 1515 aa19.67■□□□□ 0.74
LIMS1-204ENST00000409441 ZMYM3Q14202 1370 aa19.67■□□□□ 0.74
LIMS1-204ENST00000409441 CNTLNQ9NXG0 1405 aa19.66■□□□□ 0.74
LIMS1-204ENST00000409441 PZPP20742 1482 aa19.66■□□□□ 0.74
LIMS1-204ENST00000409441 PKD2Q13563 968 aa19.65■□□□□ 0.74
LIMS1-204ENST00000409441 ADAMTSL3P82987 1691 aa19.65■□□□□ 0.74
LIMS1-204ENST00000409441 LMTK2Q8IWU2 1503 aa19.64■□□□□ 0.73
LIMS1-204ENST00000409441 IQGAP3Q86VI3 1631 aa19.64■□□□□ 0.73
LIMS1-204ENST00000409441 CEBPAP49715 358 aaPredicted RBP19.63■□□□□ 0.73
LIMS1-204ENST00000409441 CLTCQ00610 1675 aaKnown RBP19.62■□□□□ 0.73
LIMS1-204ENST00000409441 MADDQ8WXG6 1647 aa19.61■□□□□ 0.73
LIMS1-204ENST00000409441 CEP152O94986 1710 aa19.6■□□□□ 0.73
LIMS1-204ENST00000409441 FBXO31Q5XUX0 539 aaPredicted RBP19.6■□□□□ 0.73
LIMS1-204ENST00000409441 FER1L4A9Z1Z3 1794 aa19.6■□□□□ 0.73
LIMS1-204ENST00000409441 ZC3H13Q5T200 1668 aaKnown RBP19.6■□□□□ 0.73
LIMS1-204ENST00000409441 ARHGAP31Q2M1Z3 1444 aa19.59■□□□□ 0.73
LIMS1-204ENST00000409441 NPATQ14207 1427 aa19.59■□□□□ 0.73
LIMS1-204ENST00000409441 TET3O43151 1660 aa19.57■□□□□ 0.72
LIMS1-204ENST00000409441 DHX57Q6P158 1386 aaKnown RBP19.57■□□□□ 0.72
LIMS1-204ENST00000409441 CAMSAP1Q5T5Y3 1602 aa19.56■□□□□ 0.72
LIMS1-204ENST00000409441 CLSPNQ9HAW4 1339 aa19.56■□□□□ 0.72
LIMS1-204ENST00000409441 EFCAB6Q5THR3 1501 aa19.56■□□□□ 0.72
LIMS1-204ENST00000409441 RIMS1Q86UR5 1692 aaKnown RBP19.56■□□□□ 0.72
LIMS1-204ENST00000409441 PTPRMP28827 1452 aa19.55■□□□□ 0.72
LIMS1-204ENST00000409441 MROH2AA6NES4 1674 aa19.54■□□□□ 0.72
LIMS1-204ENST00000409441 RPRD2Q5VT52 1461 aaKnown RBP19.54■□□□□ 0.72
LIMS1-204ENST00000409441 E9PCH4 1651 aa19.52■□□□□ 0.72
LIMS1-204ENST00000409441 C3P01024 1663 aa19.51■□□□□ 0.71
LIMS1-204ENST00000409441 CFAP65Q6ZU64 1925 aaKnown RBP19.49■□□□□ 0.71
LIMS1-204ENST00000409441 PTPRTO14522 1441 aa19.49■□□□□ 0.71
LIMS1-204ENST00000409441 NOS1P29475 1434 aa19.49■□□□□ 0.71
LIMS1-204ENST00000409441 ERVK-7P63135 1459 aa19.49■□□□□ 0.71
LIMS1-204ENST00000409441 PLA2R1Q13018 1463 aa19.49■□□□□ 0.71
LIMS1-204ENST00000409441 ANKRD30BQ9BXX2 1392 aa19.48■□□□□ 0.71
LIMS1-204ENST00000409441 TNRQ92752 1358 aa19.47■□□□□ 0.71
LIMS1-204ENST00000409441 SLC52A1Q9NWF4 448 aa19.47■□□□□ 0.71
LIMS1-204ENST00000409441 IDI1Q13907 227 aa19.46■□□□□ 0.71
LIMS1-204ENST00000409441 SPATA31D1Q6ZQQ2 1576 aa19.45■□□□□ 0.7
LIMS1-204ENST00000409441 PREX1Q8TCU6 1659 aa19.44■□□□□ 0.7
LIMS1-204ENST00000409441 SIN3AQ96ST3 1273 aa19.42■□□□□ 0.7
LIMS1-204ENST00000409441 SYNMO15061 1565 aa19.41■□□□□ 0.7
LIMS1-204ENST00000409441 TRPM2O94759 1503 aa19.4■□□□□ 0.7
LIMS1-204ENST00000409441 CCDC144AA2RUR9 1427 aa19.4■□□□□ 0.7
LIMS1-204ENST00000409441 SPHKAPQ2M3C7 1700 aa19.4■□□□□ 0.7
LIMS1-204ENST00000409441 NEUROD1Q13562 356 aa19.4■□□□□ 0.7
LIMS1-204ENST00000409441 CHGAP10645 457 aaKnown RBP19.39■□□□□ 0.69
LIMS1-204ENST00000409441 UGGT1Q9NYU2 1555 aa19.39■□□□□ 0.69
LIMS1-204ENST00000409441 STAG3Q9UJ98 1225 aa19.38■□□□□ 0.69
LIMS1-204ENST00000409441 SETD1BQ9UPS6 1966 aaKnown RBP19.37■□□□□ 0.69
LIMS1-204ENST00000409441 NLRP1Q9C000 1473 aa19.36■□□□□ 0.69
LIMS1-204ENST00000409441 CLTCL1P53675 1640 aa19.34■□□□□ 0.69
LIMS1-204ENST00000409441 UHRF1BP1Q6BDS2 1440 aa19.33■□□□□ 0.69
LIMS1-204ENST00000409441 RGL3Q3MIN7 710 aa19.33■□□□□ 0.69
LIMS1-204ENST00000409441 PIK3C2BO00750 1634 aa19.33■□□□□ 0.69
LIMS1-204ENST00000409441 THEMISQ8N1K5 641 aaPredicted RBP19.33■□□□□ 0.68
LIMS1-204ENST00000409441 A2ML1A8K2U0 1454 aa19.32■□□□□ 0.68
LIMS1-204ENST00000409441 ZNF326Q5BKZ1 582 aaKnown RBP19.31■□□□□ 0.68
LIMS1-204ENST00000409441 ZNF316A6NFI3 1004 aaPredicted RBP19.3■□□□□ 0.68
LIMS1-204ENST00000409441 MYO3AQ8NEV4 1616 aa19.3■□□□□ 0.68
LIMS1-204ENST00000409441 SPATA31E1Q6ZUB1 1445 aa19.28■□□□□ 0.68
LIMS1-204ENST00000409441 CEP170BQ9Y4F5 1589 aaPredicted RBP19.27■□□□□ 0.68
LIMS1-204ENST00000409441 TMEM131LA2VDJ0 1609 aa19.26■□□□□ 0.67
LIMS1-204ENST00000409441 ADGRB3O60242 1522 aa19.25■□□□□ 0.67
LIMS1-204ENST00000409441 HSPA2P54652 639 aa19.25■□□□□ 0.67
LIMS1-204ENST00000409441 L3MBTL2Q969R5 705 aa19.25■□□□□ 0.67
LIMS1-204ENST00000409441 KIF1BO60333 1816 aa19.25■□□□□ 0.67
LIMS1-204ENST00000409441 RPGRIP1LQ68CZ1 1315 aa19.25■□□□□ 0.67
LIMS1-204ENST00000409441 HDGFP51858 240 aaKnown RBP19.24■□□□□ 0.67
LIMS1-204ENST00000409441 TMEM2Q9UHN6 1383 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms