RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 PAXIP1Q6ZW49 1069 aaPredicted RBP9.44□□□□□ -0.9
SCN9A-202ENST00000409435 IGF1RP08069 1367 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 SLC26A8Q96RN1 970 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 COG3Q96JB2 828 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 PRDM11Q9NQV5 511 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 MINK1Q8N4C8 1332 aaPredicted RBP9.43□□□□□ -0.9
SCN9A-202ENST00000409435 MSH6P52701 1360 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 CFAP44Q96MT7 982 aa9.43□□□□□ -0.9
SCN9A-202ENST00000409435 FRAT2O75474 233 aaPredicted RBP9.42□□□□□ -0.9
SCN9A-202ENST00000409435 DENND4BO75064 1496 aaPredicted RBP9.42□□□□□ -0.9
SCN9A-202ENST00000409435 TOM1L2Q6ZVM7 507 aa9.42□□□□□ -0.9
SCN9A-202ENST00000409435 PLEKHH2Q8IVE3 1493 aa9.42□□□□□ -0.9
SCN9A-202ENST00000409435 CALRP27797 417 aaKnown RBP9.41□□□□□ -0.9
SCN9A-202ENST00000409435 BCL11BQ9C0K0 894 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-202ENST00000409435 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.41□□□□□ -0.9
SCN9A-202ENST00000409435 C8orf37Q96NL8 207 aa9.41□□□□□ -0.9
SCN9A-202ENST00000409435 TULP1O00294 542 aaPredicted RBP9.4□□□□□ -0.9
SCN9A-202ENST00000409435 DHX57Q6P158 1386 aaKnown RBP9.4□□□□□ -0.9
SCN9A-202ENST00000409435 FBXW7Q969H0 707 aa9.4□□□□□ -0.9
SCN9A-202ENST00000409435 NEUROD2Q15784 382 aa9.4□□□□□ -0.91
SCN9A-202ENST00000409435 CADPS2Q86UW7 1296 aa9.39□□□□□ -0.91
SCN9A-202ENST00000409435 LRPPRCP42704 1394 aaKnown RBP9.39□□□□□ -0.91
SCN9A-202ENST00000409435 KIAA0586Q9BVV6 1533 aa9.39□□□□□ -0.91
SCN9A-202ENST00000409435 GRIN2AQ12879 1464 aa9.39□□□□□ -0.91
SCN9A-202ENST00000409435 ABTB2Q8N961 1025 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 NUTM2GQ5VZR2 741 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 HIRIP3Q9BW71 556 aaPredicted RBP9.38□□□□□ -0.91
SCN9A-202ENST00000409435 SLC52A1Q9NWF4 448 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 EVC2Q86UK5 1308 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 PHLDB1Q86UU1 1377 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 CHMP3Q9Y3E7 222 aa9.38□□□□□ -0.91
SCN9A-202ENST00000409435 UHRF1BP1Q6BDS2 1440 aa9.37□□□□□ -0.91
SCN9A-202ENST00000409435 POLD1P28340 1107 aa9.37□□□□□ -0.91
SCN9A-202ENST00000409435 TRIM34Q9BYJ4 488 aa9.37□□□□□ -0.91
SCN9A-202ENST00000409435 TNNT3P45378 269 aaPredicted RBP9.36□□□□□ -0.91
SCN9A-202ENST00000409435 DNTTIP2Q5QJE6 756 aaKnown RBP9.36□□□□□ -0.91
SCN9A-202ENST00000409435 CCDC144AA2RUR9 1427 aa9.36□□□□□ -0.91
SCN9A-202ENST00000409435 ZNF608Q9ULD9 1512 aaPredicted RBP9.36□□□□□ -0.91
SCN9A-202ENST00000409435 NLRP6P59044 892 aa9.36□□□□□ -0.91
SCN9A-202ENST00000409435 FKBP8Q14318 412 aa9.36□□□□□ -0.91
SCN9A-202ENST00000409435 ROCK2O75116 1388 aaKnown RBP9.36□□□□□ -0.91
SCN9A-202ENST00000409435 FANCAO15360 1455 aa9.36□□□□□ -0.91
SCN9A-202ENST00000409435 RBM33Q96EV2 1170 aaKnown RBP9.36□□□□□ -0.91
SCN9A-202ENST00000409435 RTN4Q9NQC3 1192 aaKnown RBP9.35□□□□□ -0.91
SCN9A-202ENST00000409435 TEFQ10587 303 aa9.35□□□□□ -0.91
SCN9A-202ENST00000409435 FAM9BQ8IZU0 186 aa9.35□□□□□ -0.91
SCN9A-202ENST00000409435 CTDP1Q9Y5B0 961 aaPredicted RBP9.35□□□□□ -0.91
SCN9A-202ENST00000409435 WDHD1O75717 1129 aaPredicted RBP9.35□□□□□ -0.91
SCN9A-202ENST00000409435 PTMSP20962 102 aa9.35□□□□□ -0.91
SCN9A-202ENST00000409435 ADGRL1O94910 1474 aa9.35□□□□□ -0.91
SCN9A-202ENST00000409435 NLRP13Q86W25 1043 aa9.35□□□□□ -0.91
SCN9A-202ENST00000409435 CC2D1BQ5T0F9 858 aaKnown RBP9.34□□□□□ -0.91
SCN9A-202ENST00000409435 NCKAP5LQ9HCH0 1330 aa9.34□□□□□ -0.91
SCN9A-202ENST00000409435 ASXL2Q76L83 1435 aa9.34□□□□□ -0.91
SCN9A-202ENST00000409435 KCNJ4P48050 445 aa9.34□□□□□ -0.91
SCN9A-202ENST00000409435 GORABQ5T7V8 394 aa9.34□□□□□ -0.91
SCN9A-202ENST00000409435 ZRANB1Q9UGI0 708 aa9.34□□□□□ -0.91
SCN9A-202ENST00000409435 CALD1Q05682 793 aaKnown RBP9.33□□□□□ -0.92
SCN9A-202ENST00000409435 RBM42Q9BTD8 480 aaKnown RBP9.33□□□□□ -0.92
SCN9A-202ENST00000409435 FAM135AQ9P2D6 1515 aa9.33□□□□□ -0.92
SCN9A-202ENST00000409435 DDRGK1Q96HY6 314 aa9.33□□□□□ -0.92
SCN9A-202ENST00000409435 PMFBP1Q8TBY8 1022 aa9.33□□□□□ -0.92
SCN9A-202ENST00000409435 MPHOSPH9Q99550 1183 aa9.33□□□□□ -0.92
SCN9A-202ENST00000409435 KIF15Q9NS87 1388 aa9.33□□□□□ -0.92
SCN9A-202ENST00000409435 PTMAP06454 111 aaKnown RBP9.33□□□□□ -0.92
SCN9A-202ENST00000409435 CCAR1Q8IX12 1150 aaKnown RBP9.33□□□□□ -0.92
SCN9A-202ENST00000409435 XPCQ01831 940 aaPredicted RBP9.32□□□□□ -0.92
SCN9A-202ENST00000409435 URB2Q14146 1524 aaKnown RBP9.32□□□□□ -0.92
SCN9A-202ENST00000409435 DDX54Q8TDD1 881 aaKnown RBP9.32□□□□□ -0.92
SCN9A-202ENST00000409435 BAG6P46379 1132 aa9.31□□□□□ -0.92
SCN9A-202ENST00000409435 KRI1Q8N9T8 703 aaKnown RBP9.31□□□□□ -0.92
SCN9A-202ENST00000409435 NOL10Q9BSC4 688 aaKnown RBP9.31□□□□□ -0.92
SCN9A-202ENST00000409435 TATP17735 454 aaPredicted RBP9.31□□□□□ -0.92
SCN9A-202ENST00000409435 MYOM3Q5VTT5 1437 aa9.31□□□□□ -0.92
SCN9A-202ENST00000409435 STK31Q9BXU1 1019 aa9.31□□□□□ -0.92
SCN9A-202ENST00000409435 ZNF772Q68DY9 489 aaPredicted RBP9.3□□□□□ -0.92
SCN9A-202ENST00000409435 NCBP3Q53F19 620 aaKnown RBP9.3□□□□□ -0.92
SCN9A-202ENST00000409435 TNRQ92752 1358 aa9.3□□□□□ -0.92
SCN9A-202ENST00000409435 SMG6Q86US8 1419 aaKnown RBP9.3□□□□□ -0.92
SCN9A-202ENST00000409435 HDAC5Q9UQL6 1122 aa9.3□□□□□ -0.92
SCN9A-202ENST00000409435 GOLGA6L22H0YM25 854 aa9.29□□□□□ -0.92
SCN9A-202ENST00000409435 LRRC59Q96AG4 307 aaKnown RBP9.29□□□□□ -0.92
SCN9A-202ENST00000409435 FTSJ3Q8IY81 847 aaKnown RBP9.29□□□□□ -0.92
SCN9A-202ENST00000409435 CHMP4BQ9H444 224 aaKnown RBP9.29□□□□□ -0.92
SCN9A-202ENST00000409435 EPRSP07814 1512 aaKnown RBP9.29□□□□□ -0.92
SCN9A-202ENST00000409435 U2AF1L5P0DN76 240 aaPredicted RBP9.28□□□□□ -0.92
SCN9A-202ENST00000409435 U2AF1Q01081 240 aaKnown RBP eCLIP9.28□□□□□ -0.921e-8■□□□□ 11.3
SCN9A-202ENST00000409435 NGEFQ8N5V2 710 aa9.28□□□□□ -0.92
SCN9A-202ENST00000409435 MRS2Q9HD23 443 aa9.28□□□□□ -0.92
SCN9A-202ENST00000409435 SETD5Q9C0A6 1442 aa9.28□□□□□ -0.92
SCN9A-202ENST00000409435 LMOD3Q0VAK6 560 aa9.27□□□□□ -0.93
SCN9A-202ENST00000409435 BECN1Q14457 450 aa9.27□□□□□ -0.93
SCN9A-202ENST00000409435 BEGAINQ9BUH8 593 aa9.27□□□□□ -0.93
SCN9A-202ENST00000409435 HSP90B1P14625 803 aaKnown RBP9.27□□□□□ -0.93
SCN9A-202ENST00000409435 RXRBP28702 533 aa9.27□□□□□ -0.93
SCN9A-202ENST00000409435 VPS37DQ86XT2 251 aa9.27□□□□□ -0.93
SCN9A-202ENST00000409435 CLSTN1O94985 981 aa9.26□□□□□ -0.93
SCN9A-202ENST00000409435 DDX10Q13206 875 aaKnown RBP9.26□□□□□ -0.93
SCN9A-202ENST00000409435 ABCA10Q8WWZ4 1543 aa9.26□□□□□ -0.93
SCN9A-202ENST00000409435 IQGAP2Q13576 1575 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms