RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 ROCK1Q13464 1354 aa30.22■■■□□ 2.43
PDLIM2-207ENST00000409417 EIF2AK4Q9P2K8 1649 aaKnown RBP30.22■■■□□ 2.43
PDLIM2-207ENST00000409417 PLPPR3Q6T4P5 718 aa30.2■■■□□ 2.43
PDLIM2-207ENST00000409417 CEBPAP49715 358 aaPredicted RBP30.19■■■□□ 2.42
PDLIM2-207ENST00000409417 ZMYM3Q14202 1370 aa30.16■■■□□ 2.42
PDLIM2-207ENST00000409417 RNF17Q9BXT8 1623 aaKnown RBP30.16■■■□□ 2.42
PDLIM2-207ENST00000409417 WASHC2CQ9Y4E1 1318 aa30.15■■■□□ 2.42
PDLIM2-207ENST00000409417 FAM135AQ9P2D6 1515 aa30.15■■■□□ 2.42
PDLIM2-207ENST00000409417 ANKRD50Q9ULJ7 1429 aa30.13■■■□□ 2.41
PDLIM2-207ENST00000409417 MROH2AA6NES4 1674 aa30.12■■■□□ 2.41
PDLIM2-207ENST00000409417 CLTCQ00610 1675 aaKnown RBP30.11■■■□□ 2.41
PDLIM2-207ENST00000409417 KDM5DQ9BY66 1539 aa30.11■■■□□ 2.41
PDLIM2-207ENST00000409417 C3P01024 1663 aa30.09■■■□□ 2.41
PDLIM2-207ENST00000409417 MROH1Q8NDA8 1641 aa30.08■■■□□ 2.41
PDLIM2-207ENST00000409417 PRDM15P57071 1507 aaPredicted RBP30.05■■■□□ 2.4
PDLIM2-207ENST00000409417 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.05■■■□□ 2.4
PDLIM2-207ENST00000409417 ABCC3O15438 1527 aa30.04■■■□□ 2.4
PDLIM2-207ENST00000409417 DEPDC5O75140 1603 aa30.03■■■□□ 2.4
PDLIM2-207ENST00000409417 NPATQ14207 1427 aa30.03■■■□□ 2.4
PDLIM2-207ENST00000409417 KANK1Q14678 1352 aa30.02■■■□□ 2.4
PDLIM2-207ENST00000409417 SETD1BQ9UPS6 1966 aaKnown RBP30.01■■■□□ 2.39
PDLIM2-207ENST00000409417 ZC3H13Q5T200 1668 aaKnown RBP29.99■■■□□ 2.39
PDLIM2-207ENST00000409417 PZPP20742 1482 aa29.97■■■□□ 2.39
PDLIM2-207ENST00000409417 LMTK3Q96Q04 1460 aa29.97■■■□□ 2.39
PDLIM2-207ENST00000409417 NAIPQ13075 1403 aa29.95■■■□□ 2.38
PDLIM2-207ENST00000409417 VWDEQ8N2E2 1590 aa29.94■■■□□ 2.38
PDLIM2-207ENST00000409417 HFM1A2PYH4 1435 aa29.94■■■□□ 2.38
PDLIM2-207ENST00000409417 FBXO31Q5XUX0 539 aaPredicted RBP29.93■■■□□ 2.38
PDLIM2-207ENST00000409417 UHRF1BP1Q6BDS2 1440 aa29.92■■■□□ 2.38
PDLIM2-207ENST00000409417 LMTK2Q8IWU2 1503 aa29.91■■■□□ 2.38
PDLIM2-207ENST00000409417 PREX1Q8TCU6 1659 aa29.91■■■□□ 2.38
PDLIM2-207ENST00000409417 CEP152O94986 1710 aa29.9■■■□□ 2.38
PDLIM2-207ENST00000409417 ARHGAP31Q2M1Z3 1444 aa29.89■■■□□ 2.38
PDLIM2-207ENST00000409417 CAMSAP1Q5T5Y3 1602 aa29.88■■■□□ 2.37
PDLIM2-207ENST00000409417 UNC13BO14795 1591 aa29.88■■■□□ 2.37
PDLIM2-207ENST00000409417 TNRQ92752 1358 aa29.87■■■□□ 2.37
PDLIM2-207ENST00000409417 HSPA2P54652 639 aa29.85■■■□□ 2.37
PDLIM2-207ENST00000409417 GCC2Q8IWJ2 1684 aa29.85■■■□□ 2.37
PDLIM2-207ENST00000409417 NUP155O75694 1391 aa29.84■■■□□ 2.37
PDLIM2-207ENST00000409417 ERVK-7P63135 1459 aa29.81■■■□□ 2.36
PDLIM2-207ENST00000409417 EFCAB6Q5THR3 1501 aa29.8■■■□□ 2.36
PDLIM2-207ENST00000409417 SPATA31D1Q6ZQQ2 1576 aa29.8■■■□□ 2.36
PDLIM2-207ENST00000409417 MYO3AQ8NEV4 1616 aa29.77■■■□□ 2.36
PDLIM2-207ENST00000409417 IQGAP3Q86VI3 1631 aa29.76■■■□□ 2.35
PDLIM2-207ENST00000409417 TET3O43151 1660 aa29.75■■■□□ 2.35
PDLIM2-207ENST00000409417 RPRD2Q5VT52 1461 aaKnown RBP29.75■■■□□ 2.35
PDLIM2-207ENST00000409417 NLRP1Q9C000 1473 aa29.75■■■□□ 2.35
PDLIM2-207ENST00000409417 A2ML1A8K2U0 1454 aa29.74■■■□□ 2.35
PDLIM2-207ENST00000409417 CEP170BQ9Y4F5 1589 aaPredicted RBP29.73■■■□□ 2.35
PDLIM2-207ENST00000409417 CFAP65Q6ZU64 1925 aaKnown RBP29.72■■■□□ 2.35
PDLIM2-207ENST00000409417 ZNF142P52746 1687 aaPredicted RBP29.71■■■□□ 2.35
PDLIM2-207ENST00000409417 TRIM52Q96A61 297 aa29.69■■■□□ 2.34
PDLIM2-207ENST00000409417 NOS1P29475 1434 aa29.69■■■□□ 2.34
PDLIM2-207ENST00000409417 SETD5Q9C0A6 1442 aa29.68■■■□□ 2.34
PDLIM2-207ENST00000409417 ACIN1Q9UKV3 1341 aaKnown RBP29.64■■■□□ 2.33
PDLIM2-207ENST00000409417 THEMISQ8N1K5 641 aaPredicted RBP29.63■■■□□ 2.33
PDLIM2-207ENST00000409417 SLC52A1Q9NWF4 448 aa29.62■■■□□ 2.33
PDLIM2-207ENST00000409417 E9PCH4 1651 aa29.62■■■□□ 2.33
PDLIM2-207ENST00000409417 UGGT1Q9NYU2 1555 aa29.61■■■□□ 2.33
PDLIM2-207ENST00000409417 SYNMO15061 1565 aa29.61■■■□□ 2.33
PDLIM2-207ENST00000409417 PLA2R1Q13018 1463 aa29.6■■■□□ 2.33
PDLIM2-207ENST00000409417 IDI1Q13907 227 aa29.6■■■□□ 2.33
PDLIM2-207ENST00000409417 SLC4A1APQ9BWU0 796 aaKnown RBP29.59■■■□□ 2.33
PDLIM2-207ENST00000409417 RAB3GAP2Q9H2M9 1393 aa29.58■■■□□ 2.33
PDLIM2-207ENST00000409417 DMRT2Q9Y5R5 561 aa29.56■■■□□ 2.32
PDLIM2-207ENST00000409417 STRCQ7RTU9 1775 aa29.55■■■□□ 2.32
PDLIM2-207ENST00000409417 PKD2Q13563 968 aa29.55■■■□□ 2.32
PDLIM2-207ENST00000409417 PTPRTO14522 1441 aa29.52■■■□□ 2.32
PDLIM2-207ENST00000409417 NCKAP5LQ9HCH0 1330 aa29.52■■■□□ 2.32
PDLIM2-207ENST00000409417 HRCP23327 699 aa29.52■■■□□ 2.32
PDLIM2-207ENST00000409417 STAG3Q9UJ98 1225 aa29.52■■■□□ 2.32
PDLIM2-207ENST00000409417 PIK3C2BO00750 1634 aa29.5■■■□□ 2.31
PDLIM2-207ENST00000409417 ANKLE2Q86XL3 938 aa29.49■■■□□ 2.31
PDLIM2-207ENST00000409417 MPHOSPH9Q99550 1183 aa29.49■■■□□ 2.31
PDLIM2-207ENST00000409417 UBR1Q8IWV7 1749 aa29.49■■■□□ 2.31
PDLIM2-207ENST00000409417 KDM5AP29375 1690 aaKnown RBP29.46■■■□□ 2.31
PDLIM2-207ENST00000409417 ADGRB3O60242 1522 aa29.44■■■□□ 2.3
PDLIM2-207ENST00000409417 TMEM2Q9UHN6 1383 aa29.43■■■□□ 2.3
PDLIM2-207ENST00000409417 SPHKAPQ2M3C7 1700 aa29.43■■■□□ 2.3
PDLIM2-207ENST00000409417 TRIM26Q12899 539 aaPredicted RBP29.42■■■□□ 2.3
PDLIM2-207ENST00000409417 SLIT1O75093 1534 aa29.42■■■□□ 2.3
PDLIM2-207ENST00000409417 ARHGAP23Q9P227 1491 aa29.42■■■□□ 2.3
PDLIM2-207ENST00000409417 TRPM2O94759 1503 aa29.4■■■□□ 2.3
PDLIM2-207ENST00000409417 FOXD1Q16676 465 aa29.4■■■□□ 2.3
PDLIM2-207ENST00000409417 TXNDC2Q86VQ3 553 aa29.38■■■□□ 2.29
PDLIM2-207ENST00000409417 EID1Q9Y6B2 187 aa29.38■■■□□ 2.29
PDLIM2-207ENST00000409417 CHGAP10645 457 aaKnown RBP29.37■■■□□ 2.29
PDLIM2-207ENST00000409417 LTKP29376 864 aa29.37■■■□□ 2.29
PDLIM2-207ENST00000409417 TMEM131LA2VDJ0 1609 aa29.37■■■□□ 2.29
PDLIM2-207ENST00000409417 MED14O60244 1454 aa29.36■■■□□ 2.29
PDLIM2-207ENST00000409417 NEURL4Q96JN8 1562 aa29.36■■■□□ 2.29
PDLIM2-207ENST00000409417 POLR1AO95602 1720 aaPredicted RBP29.36■■■□□ 2.29
PDLIM2-207ENST00000409417 SCAF11Q99590 1463 aaKnown RBP29.36■■■□□ 2.29
PDLIM2-207ENST00000409417 NPHP4O75161 1426 aaPredicted RBP29.34■■■□□ 2.29
PDLIM2-207ENST00000409417 CLTCL1P53675 1640 aa29.31■■■□□ 2.28
PDLIM2-207ENST00000409417 HDGFP51858 240 aaKnown RBP29.3■■■□□ 2.28
PDLIM2-207ENST00000409417 ZFYVE9O95405 1425 aa29.29■■■□□ 2.28
PDLIM2-207ENST00000409417 RIMS2Q9UQ26 1411 aa29.28■■■□□ 2.28
PDLIM2-207ENST00000409417 MYO5BQ9ULV0 1848 aa29.27■■■□□ 2.28
PDLIM2-207ENST00000409417 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.26■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms