RNA–Protein interactions for RNA: ENST00000396345.1

HOXA9-202, Transcript of homeobox A9, humanhuman

TSL 2 BASIC

Gene HOXA9, Length 797 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-202ENST00000396345 PPP6R1Q9UPN7 881 aa29.01■■■□□ 2.23
HOXA9-202ENST00000396345 RNF17Q9BXT8 1623 aaKnown RBP29.01■■■□□ 2.23
HOXA9-202ENST00000396345 PTPRMP28827 1452 aa28.98■■■□□ 2.23
HOXA9-202ENST00000396345 CNTLNQ9NXG0 1405 aa28.96■■■□□ 2.23
HOXA9-202ENST00000396345 CLTCQ00610 1675 aaKnown RBP28.93■■■□□ 2.22
HOXA9-202ENST00000396345 MROH1Q8NDA8 1641 aa28.92■■■□□ 2.22
HOXA9-202ENST00000396345 WASHC2CQ9Y4E1 1318 aa28.92■■■□□ 2.22
HOXA9-202ENST00000396345 DEPDC5O75140 1603 aa28.91■■■□□ 2.22
HOXA9-202ENST00000396345 FAM135AQ9P2D6 1515 aa28.91■■■□□ 2.22
HOXA9-202ENST00000396345 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.91■■■□□ 2.22
HOXA9-202ENST00000396345 NAIPQ13075 1403 aa28.91■■■□□ 2.22
HOXA9-202ENST00000396345 HFM1A2PYH4 1435 aa28.9■■■□□ 2.22
HOXA9-202ENST00000396345 PLPPR3Q6T4P5 718 aa28.9■■■□□ 2.22
HOXA9-202ENST00000396345 GCC2Q8IWJ2 1684 aa28.89■■■□□ 2.22
HOXA9-202ENST00000396345 KDM5DQ9BY66 1539 aa28.89■■■□□ 2.22
HOXA9-202ENST00000396345 MROH2AA6NES4 1674 aa28.89■■■□□ 2.21
HOXA9-202ENST00000396345 PRDM15P57071 1507 aaPredicted RBP28.89■■■□□ 2.21
HOXA9-202ENST00000396345 ZMYM3Q14202 1370 aa28.87■■■□□ 2.21
HOXA9-202ENST00000396345 KANK1Q14678 1352 aa28.87■■■□□ 2.21
HOXA9-202ENST00000396345 CEBPAP49715 358 aaPredicted RBP28.86■■■□□ 2.21
HOXA9-202ENST00000396345 C3P01024 1663 aa28.85■■■□□ 2.21
HOXA9-202ENST00000396345 ABCC3O15438 1527 aa28.84■■■□□ 2.21
HOXA9-202ENST00000396345 ZC3H13Q5T200 1668 aaKnown RBP28.84■■■□□ 2.21
HOXA9-202ENST00000396345 UNC13BO14795 1591 aa28.82■■■□□ 2.2
HOXA9-202ENST00000396345 CEP152O94986 1710 aa28.82■■■□□ 2.2
HOXA9-202ENST00000396345 VWDEQ8N2E2 1590 aa28.79■■■□□ 2.2
HOXA9-202ENST00000396345 CAMSAP1Q5T5Y3 1602 aa28.76■■■□□ 2.19
HOXA9-202ENST00000396345 NUP155O75694 1391 aa28.75■■■□□ 2.19
HOXA9-202ENST00000396345 LMTK2Q8IWU2 1503 aa28.74■■■□□ 2.19
HOXA9-202ENST00000396345 SETD5Q9C0A6 1442 aa28.74■■■□□ 2.19
HOXA9-202ENST00000396345 PZPP20742 1482 aa28.73■■■□□ 2.19
HOXA9-202ENST00000396345 IQGAP3Q86VI3 1631 aa28.71■■■□□ 2.19
HOXA9-202ENST00000396345 NPATQ14207 1427 aa28.7■■■□□ 2.19
HOXA9-202ENST00000396345 TRIM26Q12899 539 aaPredicted RBP28.7■■■□□ 2.18
HOXA9-202ENST00000396345 FBXO31Q5XUX0 539 aaPredicted RBP28.69■■■□□ 2.18
HOXA9-202ENST00000396345 ARHGAP31Q2M1Z3 1444 aa28.69■■■□□ 2.18
HOXA9-202ENST00000396345 SETD1BQ9UPS6 1966 aaKnown RBP28.68■■■□□ 2.18
HOXA9-202ENST00000396345 TRIM52Q96A61 297 aa28.68■■■□□ 2.18
HOXA9-202ENST00000396345 TET3O43151 1660 aa28.67■■■□□ 2.18
HOXA9-202ENST00000396345 EFCAB6Q5THR3 1501 aa28.66■■■□□ 2.18
HOXA9-202ENST00000396345 CFAP65Q6ZU64 1925 aaKnown RBP28.65■■■□□ 2.18
HOXA9-202ENST00000396345 RAB3GAP2Q9H2M9 1393 aa28.63■■■□□ 2.17
HOXA9-202ENST00000396345 PREX1Q8TCU6 1659 aa28.62■■■□□ 2.17
HOXA9-202ENST00000396345 ACIN1Q9UKV3 1341 aaKnown RBP28.61■■■□□ 2.17
HOXA9-202ENST00000396345 TNRQ92752 1358 aa28.61■■■□□ 2.17
HOXA9-202ENST00000396345 ERVK-7P63135 1459 aa28.6■■■□□ 2.17
HOXA9-202ENST00000396345 SPATA31D1Q6ZQQ2 1576 aa28.59■■■□□ 2.17
HOXA9-202ENST00000396345 UHRF1BP1Q6BDS2 1440 aa28.59■■■□□ 2.17
HOXA9-202ENST00000396345 RPRD2Q5VT52 1461 aaKnown RBP28.58■■■□□ 2.17
HOXA9-202ENST00000396345 E9PCH4 1651 aa28.57■■■□□ 2.16
HOXA9-202ENST00000396345 LMTK3Q96Q04 1460 aa28.55■■■□□ 2.16
HOXA9-202ENST00000396345 MYO3AQ8NEV4 1616 aa28.54■■■□□ 2.16
HOXA9-202ENST00000396345 HRCP23327 699 aa28.54■■■□□ 2.16
HOXA9-202ENST00000396345 SLC4A1APQ9BWU0 796 aaKnown RBP28.54■■■□□ 2.16
HOXA9-202ENST00000396345 NOS1P29475 1434 aa28.51■■■□□ 2.15
HOXA9-202ENST00000396345 NLRP1Q9C000 1473 aa28.49■■■□□ 2.15
HOXA9-202ENST00000396345 PKD2Q13563 968 aa28.49■■■□□ 2.15
HOXA9-202ENST00000396345 A2ML1A8K2U0 1454 aa28.47■■■□□ 2.15
HOXA9-202ENST00000396345 CEP170BQ9Y4F5 1589 aaPredicted RBP28.47■■■□□ 2.15
HOXA9-202ENST00000396345 MPHOSPH9Q99550 1183 aa28.47■■■□□ 2.15
HOXA9-202ENST00000396345 ZNF142P52746 1687 aaPredicted RBP28.47■■■□□ 2.15
HOXA9-202ENST00000396345 SYNMO15061 1565 aa28.46■■■□□ 2.15
HOXA9-202ENST00000396345 ILDR1Q86SU0 546 aaPredicted RBP28.46■■■□□ 2.15
HOXA9-202ENST00000396345 HSPA2P54652 639 aa28.45■■■□□ 2.14
HOXA9-202ENST00000396345 SLC52A1Q9NWF4 448 aa28.42■■■□□ 2.14
HOXA9-202ENST00000396345 SPHKAPQ2M3C7 1700 aa28.4■■■□□ 2.14
HOXA9-202ENST00000396345 IDI1Q13907 227 aa28.4■■■□□ 2.14
HOXA9-202ENST00000396345 PTPRTO14522 1441 aa28.4■■■□□ 2.14
HOXA9-202ENST00000396345 UGGT1Q9NYU2 1555 aa28.38■■■□□ 2.13
HOXA9-202ENST00000396345 FOXD1Q16676 465 aa28.38■■■□□ 2.13
HOXA9-202ENST00000396345 PIK3C2BO00750 1634 aa28.36■■■□□ 2.13
HOXA9-202ENST00000396345 THEMISQ8N1K5 641 aaPredicted RBP28.35■■■□□ 2.13
HOXA9-202ENST00000396345 STAG3Q9UJ98 1225 aa28.34■■■□□ 2.13
HOXA9-202ENST00000396345 UBR1Q8IWV7 1749 aa28.33■■■□□ 2.13
HOXA9-202ENST00000396345 PCGF6Q9BYE7 350 aa28.33■■■□□ 2.13
HOXA9-202ENST00000396345 PLA2R1Q13018 1463 aa28.33■■■□□ 2.13
HOXA9-202ENST00000396345 TRPM2O94759 1503 aa28.33■■■□□ 2.13
HOXA9-202ENST00000396345 KDM5AP29375 1690 aaKnown RBP28.29■■■□□ 2.12
HOXA9-202ENST00000396345 ADGRB3O60242 1522 aa28.28■■■□□ 2.12
HOXA9-202ENST00000396345 CHGAP10645 457 aaKnown RBP28.27■■■□□ 2.12
HOXA9-202ENST00000396345 CLTCL1P53675 1640 aa28.26■■■□□ 2.11
HOXA9-202ENST00000396345 TMEM131LA2VDJ0 1609 aa28.24■■■□□ 2.11
HOXA9-202ENST00000396345 STRCQ7RTU9 1775 aa28.24■■■□□ 2.11
HOXA9-202ENST00000396345 NCKAP5LQ9HCH0 1330 aa28.22■■■□□ 2.11
HOXA9-202ENST00000396345 MYO5BQ9ULV0 1848 aa28.22■■■□□ 2.11
HOXA9-202ENST00000396345 ANKLE2Q86XL3 938 aa28.21■■■□□ 2.11
HOXA9-202ENST00000396345 CCDC144AA2RUR9 1427 aa28.2■■■□□ 2.11
HOXA9-202ENST00000396345 TMEM2Q9UHN6 1383 aa28.2■■■□□ 2.1
HOXA9-202ENST00000396345 SLIT1O75093 1534 aa28.19■■■□□ 2.1
HOXA9-202ENST00000396345 KIF1BO60333 1816 aa28.19■■■□□ 2.1
HOXA9-202ENST00000396345 ARHGAP23Q9P227 1491 aa28.19■■■□□ 2.1
HOXA9-202ENST00000396345 ANKRD30BQ9BXX2 1392 aa28.18■■■□□ 2.1
HOXA9-202ENST00000396345 POLR1AO95602 1720 aaPredicted RBP28.16■■■□□ 2.1
HOXA9-202ENST00000396345 DMRT2Q9Y5R5 561 aa28.16■■■□□ 2.1
HOXA9-202ENST00000396345 EID1Q9Y6B2 187 aa28.16■■■□□ 2.1
HOXA9-202ENST00000396345 TXNDC2Q86VQ3 553 aa28.15■■■□□ 2.1
HOXA9-202ENST00000396345 LTKP29376 864 aa28.13■■■□□ 2.09
HOXA9-202ENST00000396345 ZNF326Q5BKZ1 582 aaKnown RBP28.13■■■□□ 2.09
HOXA9-202ENST00000396345 RIMS2Q9UQ26 1411 aa28.12■■■□□ 2.09
HOXA9-202ENST00000396345 SCAF11Q99590 1463 aaKnown RBP28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms