RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 MS4A1P11836 297 aa12.1□□□□□ -0.47
PTPRA-204ENST00000380393 AKNAQ7Z591 1439 aa12.09□□□□□ -0.47
PTPRA-204ENST00000380393 EFCAB5A4FU69 1503 aa12.09□□□□□ -0.47
PTPRA-204ENST00000380393 UGGT2Q9NYU1 1516 aa12.09□□□□□ -0.47
PTPRA-204ENST00000380393 FMN1Q68DA7 1419 aa12.08□□□□□ -0.47
PTPRA-204ENST00000380393 ZBED9Q6R2W3 1325 aa12.08□□□□□ -0.48
PTPRA-204ENST00000380393 KIAA0556O60303 1618 aa12.07□□□□□ -0.48
PTPRA-204ENST00000380393 CDK13Q14004 1512 aaKnown RBP12.07□□□□□ -0.48
PTPRA-204ENST00000380393 RIPK4P57078 832 aa12.07□□□□□ -0.48
PTPRA-204ENST00000380393 ERBB4Q15303 1308 aa12.07□□□□□ -0.48
PTPRA-204ENST00000380393 DNTTIP2Q5QJE6 756 aaKnown RBP12.06□□□□□ -0.48
PTPRA-204ENST00000380393 PLPPR3Q6T4P5 718 aa12.06□□□□□ -0.48
PTPRA-204ENST00000380393 CASKIN1Q8WXD9 1431 aa12.06□□□□□ -0.48
PTPRA-204ENST00000380393 TRIM44Q96DX7 344 aaPredicted RBP12.06□□□□□ -0.48
PTPRA-204ENST00000380393 CARMIL2Q6F5E8 1435 aa12.06□□□□□ -0.48
PTPRA-204ENST00000380393 IRX3P78415 501 aaPredicted RBP12.05□□□□□ -0.48
PTPRA-204ENST00000380393 BCCIPQ9P287 314 aaKnown RBP eCLIP12.05□□□□□ -0.48
PTPRA-204ENST00000380393 MAPK8IP2Q13387 824 aaPredicted RBP12.05□□□□□ -0.48
PTPRA-204ENST00000380393 PTPRGP23470 1445 aa12.04□□□□□ -0.48
PTPRA-204ENST00000380393 E9PSI1 815 aa12.04□□□□□ -0.48
PTPRA-204ENST00000380393 MYH16Q9H6N6 1097 aa12.04□□□□□ -0.48
PTPRA-204ENST00000380393 RGS22Q8NE09 1264 aa12.03□□□□□ -0.48
PTPRA-204ENST00000380393 MTUS2Q5JR59 1369 aa12.03□□□□□ -0.48
PTPRA-204ENST00000380393 TONSLQ96HA7 1378 aa12.03□□□□□ -0.48
PTPRA-204ENST00000380393 KIF20AO95235 890 aa12.03□□□□□ -0.48
PTPRA-204ENST00000380393 ZSCAN20P17040 1043 aaPredicted RBP12.03□□□□□ -0.48
PTPRA-204ENST00000380393 RNF216Q9NWF9 866 aaPredicted RBP12.03□□□□□ -0.48
PTPRA-204ENST00000380393 CNPY4Q8N129 248 aa12.03□□□□□ -0.48
PTPRA-204ENST00000380393 CCDC184Q52MB2 194 aa12.02□□□□□ -0.49
PTPRA-204ENST00000380393 MTERF4Q7Z6M4 381 aaKnown RBP12.02□□□□□ -0.49
PTPRA-204ENST00000380393 PHLDB1Q86UU1 1377 aa12.02□□□□□ -0.49
PTPRA-204ENST00000380393 LRRIQ1Q96JM4 1722 aa12.02□□□□□ -0.49
PTPRA-204ENST00000380393 TIAM1Q13009 1591 aa12.02□□□□□ -0.49
PTPRA-204ENST00000380393 FYCO1Q9BQS8 1478 aa12.02□□□□□ -0.49
PTPRA-204ENST00000380393 LRRC9Q6ZRR7 1453 aa12.01□□□□□ -0.49
PTPRA-204ENST00000380393 MRS2Q9HD23 443 aa12.01□□□□□ -0.49
PTPRA-204ENST00000380393 ZBTB22O15209 634 aa12□□□□□ -0.49
PTPRA-204ENST00000380393 POLR3GLQ9BT43 218 aa12□□□□□ -0.49
PTPRA-204ENST00000380393 NUP153P49790 1475 aaKnown RBP12□□□□□ -0.49
PTPRA-204ENST00000380393 GZF1Q9H116 711 aaPredicted RBP12□□□□□ -0.49
PTPRA-204ENST00000380393 SETD5Q9C0A6 1442 aa12□□□□□ -0.49
PTPRA-204ENST00000380393 MAGI3Q5TCQ9 1506 aa11.99□□□□□ -0.49
PTPRA-204ENST00000380393 FSD2A1L4K1 749 aa11.99□□□□□ -0.49
PTPRA-204ENST00000380393 EPRSP07814 1512 aaKnown RBP11.99□□□□□ -0.49
PTPRA-204ENST00000380393 RNF123Q5XPI4 1314 aa11.98□□□□□ -0.49
PTPRA-204ENST00000380393 CLASP1Q7Z460 1538 aa11.98□□□□□ -0.49
PTPRA-204ENST00000380393 RRBP1Q9P2E9 1410 aaKnown RBP11.98□□□□□ -0.49
PTPRA-204ENST00000380393 LETM1O95202 739 aaPredicted RBP11.98□□□□□ -0.49
PTPRA-204ENST00000380393 MRE11P49959 708 aa11.98□□□□□ -0.49
PTPRA-204ENST00000380393 GTPBP4Q9BZE4 634 aaKnown RBP11.98□□□□□ -0.49
PTPRA-204ENST00000380393 NUDCQ9Y266 331 aa11.98□□□□□ -0.49
PTPRA-204ENST00000380393 WWC1Q8IX03 1113 aa11.97□□□□□ -0.49
PTPRA-204ENST00000380393 KCNG1Q9UIX4 513 aa11.97□□□□□ -0.49
PTPRA-204ENST00000380393 SMG6Q86US8 1419 aaKnown RBP11.97□□□□□ -0.49
PTPRA-204ENST00000380393 CYB5RLQ6IPT4 315 aa11.97□□□□□ -0.49
PTPRA-204ENST00000380393 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.97□□□□□ -0.49
PTPRA-204ENST00000380393 MAPKBP1O60336 1514 aa11.96□□□□□ -0.49
PTPRA-204ENST00000380393 C14orf37Q86TY3 774 aa11.96□□□□□ -0.49
PTPRA-204ENST00000380393 OFD1O75665 1012 aa11.96□□□□□ -0.5
PTPRA-204ENST00000380393 TAF3Q5VWG9 929 aa11.96□□□□□ -0.5
PTPRA-204ENST00000380393 TERF1P54274 439 aa11.96□□□□□ -0.5
PTPRA-204ENST00000380393 CERS3Q8IU89 383 aa11.96□□□□□ -0.5
PTPRA-204ENST00000380393 CGNQ9P2M7 1197 aaKnown RBP11.96□□□□□ -0.5
PTPRA-204ENST00000380393 R3HCC1Q9Y3T6 440 aaKnown RBP11.96□□□□□ -0.5
PTPRA-204ENST00000380393 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.95□□□□□ -0.5
PTPRA-204ENST00000380393 CCDC94Q9BW85 323 aaPredicted RBP11.95□□□□□ -0.5
PTPRA-204ENST00000380393 VGFO15240 615 aaPredicted RBP11.94□□□□□ -0.5
PTPRA-204ENST00000380393 EXOC6Q8TAG9 804 aa11.94□□□□□ -0.5
PTPRA-204ENST00000380393 RAPGEF6Q8TEU7 1601 aa11.94□□□□□ -0.5
PTPRA-204ENST00000380393 AEBP1Q8IUX7 1158 aa11.94□□□□□ -0.5
PTPRA-204ENST00000380393 CNKSR2Q8WXI2 1034 aa11.94□□□□□ -0.5
PTPRA-204ENST00000380393 ZNF777Q9ULD5 760 aaPredicted RBP11.94□□□□□ -0.5
PTPRA-204ENST00000380393 ZNF644Q9H582 1327 aaPredicted RBP11.94□□□□□ -0.5
PTPRA-204ENST00000380393 UQCRHLA0A096LP55 91 aa11.93□□□□□ -0.5
PTPRA-204ENST00000380393 UQCRHP07919 91 aa11.93□□□□□ -0.5
PTPRA-204ENST00000380393 SKAP1Q86WV1 359 aa11.93□□□□□ -0.5
PTPRA-204ENST00000380393 TMC1Q8TDI8 760 aa11.93□□□□□ -0.5
PTPRA-204ENST00000380393 ATP10BO94823 1461 aa11.93□□□□□ -0.5
PTPRA-204ENST00000380393 SHROOM2Q13796 1616 aa11.92□□□□□ -0.5
PTPRA-204ENST00000380393 PLEKHD1A6NEE1 506 aa11.92□□□□□ -0.5
PTPRA-204ENST00000380393 SLKQ9H2G2 1235 aaPredicted RBP11.92□□□□□ -0.5
PTPRA-204ENST00000380393 GRPEL1Q9HAV7 217 aa11.92□□□□□ -0.5
PTPRA-204ENST00000380393 HECW1Q76N89 1606 aa11.92□□□□□ -0.5
PTPRA-204ENST00000380393 UACAQ9BZF9 1416 aa11.91□□□□□ -0.5
PTPRA-204ENST00000380393 CHIC2Q9UKJ5 165 aa11.91□□□□□ -0.5
PTPRA-204ENST00000380393 HSPA5P11021 654 aaKnown RBP11.91□□□□□ -0.5
PTPRA-204ENST00000380393 HDAC5Q9UQL6 1122 aa11.91□□□□□ -0.5
PTPRA-204ENST00000380393 NCOA2Q15596 1464 aa11.91□□□□□ -0.5
PTPRA-204ENST00000380393 CFAP43Q8NDM7 1665 aa11.9□□□□□ -0.5
PTPRA-204ENST00000380393 APPP05067 770 aa11.9□□□□□ -0.5
PTPRA-204ENST00000380393 HSP90B1P14625 803 aaKnown RBP11.9□□□□□ -0.51
PTPRA-204ENST00000380393 MSNP26038 577 aaKnown RBP11.89□□□□□ -0.51
PTPRA-204ENST00000380393 CBX1P83916 185 aa11.89□□□□□ -0.51
PTPRA-204ENST00000380393 ABCA8O94911 1581 aa11.89□□□□□ -0.51
PTPRA-204ENST00000380393 DYNC1I1O14576 645 aa11.88□□□□□ -0.51
PTPRA-204ENST00000380393 MAP3K1Q13233 1512 aa11.87□□□□□ -0.51
PTPRA-204ENST00000380393 MYCNP04198 464 aaPredicted RBP11.87□□□□□ -0.51
PTPRA-204ENST00000380393 ZSCAN30Q86W11 494 aa11.87□□□□□ -0.51
PTPRA-204ENST00000380393 CCDC18Q5T9S5 1454 aa11.87□□□□□ -0.51
PTPRA-204ENST00000380393 CLGNO14967 610 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms