RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 ADAMTSL3P82987 1691 aa17.62■□□□□ 0.41
DEPDC4-202ENST00000378244 NAIPQ13075 1403 aa17.6■□□□□ 0.41
DEPDC4-202ENST00000378244 RIMS1Q86UR5 1692 aaKnown RBP17.59■□□□□ 0.41
DEPDC4-202ENST00000378244 PTPRMP28827 1452 aa17.59■□□□□ 0.41
DEPDC4-202ENST00000378244 FER1L4A9Z1Z3 1794 aa17.58■□□□□ 0.4
DEPDC4-202ENST00000378244 HFM1A2PYH4 1435 aa17.57■□□□□ 0.4
DEPDC4-202ENST00000378244 ZMYM3Q14202 1370 aa17.56■□□□□ 0.4
DEPDC4-202ENST00000378244 EIF2AK4Q9P2K8 1649 aaKnown RBP17.56■□□□□ 0.4
DEPDC4-202ENST00000378244 PPP6R1Q9UPN7 881 aa17.56■□□□□ 0.4
DEPDC4-202ENST00000378244 TRIM52Q96A61 297 aa17.55■□□□□ 0.4
DEPDC4-202ENST00000378244 KANK1Q14678 1352 aa17.54■□□□□ 0.4
DEPDC4-202ENST00000378244 TRIM26Q12899 539 aaPredicted RBP17.54■□□□□ 0.4
DEPDC4-202ENST00000378244 CLTCQ00610 1675 aaKnown RBP17.54■□□□□ 0.4
DEPDC4-202ENST00000378244 MROH1Q8NDA8 1641 aa17.53■□□□□ 0.4
DEPDC4-202ENST00000378244 NUP155O75694 1391 aa17.53■□□□□ 0.4
DEPDC4-202ENST00000378244 FBXO31Q5XUX0 539 aaPredicted RBP17.53■□□□□ 0.4
DEPDC4-202ENST00000378244 CNTLNQ9NXG0 1405 aa17.53■□□□□ 0.4
DEPDC4-202ENST00000378244 RNF17Q9BXT8 1623 aaKnown RBP17.53■□□□□ 0.4
DEPDC4-202ENST00000378244 KDM5DQ9BY66 1539 aa17.52■□□□□ 0.4
DEPDC4-202ENST00000378244 PRDM15P57071 1507 aaPredicted RBP17.5■□□□□ 0.39
DEPDC4-202ENST00000378244 ABCC3O15438 1527 aa17.5■□□□□ 0.39
DEPDC4-202ENST00000378244 SETD5Q9C0A6 1442 aa17.49■□□□□ 0.39
DEPDC4-202ENST00000378244 DEPDC5O75140 1603 aa17.48■□□□□ 0.39
DEPDC4-202ENST00000378244 GCC2Q8IWJ2 1684 aa17.48■□□□□ 0.39
DEPDC4-202ENST00000378244 RAB3GAP2Q9H2M9 1393 aa17.47■□□□□ 0.39
DEPDC4-202ENST00000378244 CEP152O94986 1710 aa17.47■□□□□ 0.39
DEPDC4-202ENST00000378244 C3P01024 1663 aa17.47■□□□□ 0.39
DEPDC4-202ENST00000378244 SLC4A1APQ9BWU0 796 aaKnown RBP17.44■□□□□ 0.38
DEPDC4-202ENST00000378244 UNC13BO14795 1591 aa17.44■□□□□ 0.38
DEPDC4-202ENST00000378244 PCGF6Q9BYE7 350 aa17.43■□□□□ 0.38
DEPDC4-202ENST00000378244 NPATQ14207 1427 aa17.43■□□□□ 0.38
DEPDC4-202ENST00000378244 VWDEQ8N2E2 1590 aa17.42■□□□□ 0.38
DEPDC4-202ENST00000378244 PZPP20742 1482 aa17.42■□□□□ 0.38
DEPDC4-202ENST00000378244 CFAP65Q6ZU64 1925 aaKnown RBP17.42■□□□□ 0.38
DEPDC4-202ENST00000378244 MROH2AA6NES4 1674 aa17.42■□□□□ 0.38
DEPDC4-202ENST00000378244 FAM135AQ9P2D6 1515 aa17.41■□□□□ 0.38
DEPDC4-202ENST00000378244 CAMSAP1Q5T5Y3 1602 aa17.41■□□□□ 0.38
DEPDC4-202ENST00000378244 ZC3H13Q5T200 1668 aaKnown RBP17.41■□□□□ 0.38
DEPDC4-202ENST00000378244 HSPA2P54652 639 aa17.41■□□□□ 0.38
DEPDC4-202ENST00000378244 FOXD1Q16676 465 aa17.41■□□□□ 0.38
DEPDC4-202ENST00000378244 PKD2Q13563 968 aa17.39■□□□□ 0.38
DEPDC4-202ENST00000378244 LMTK2Q8IWU2 1503 aa17.39■□□□□ 0.37
DEPDC4-202ENST00000378244 TNRQ92752 1358 aa17.39■□□□□ 0.37
DEPDC4-202ENST00000378244 MPHOSPH9Q99550 1183 aa17.38■□□□□ 0.37
DEPDC4-202ENST00000378244 EFCAB6Q5THR3 1501 aa17.38■□□□□ 0.37
DEPDC4-202ENST00000378244 IQGAP3Q86VI3 1631 aa17.37■□□□□ 0.37
DEPDC4-202ENST00000378244 ARHGAP31Q2M1Z3 1444 aa17.37■□□□□ 0.37
DEPDC4-202ENST00000378244 UHRF1BP1Q6BDS2 1440 aa17.36■□□□□ 0.37
DEPDC4-202ENST00000378244 ERVK-7P63135 1459 aa17.36■□□□□ 0.37
DEPDC4-202ENST00000378244 TET3O43151 1660 aa17.35■□□□□ 0.37
DEPDC4-202ENST00000378244 LMTK3Q96Q04 1460 aa17.33■□□□□ 0.36
DEPDC4-202ENST00000378244 SETD1BQ9UPS6 1966 aaKnown RBP17.33■□□□□ 0.36
DEPDC4-202ENST00000378244 IDI1Q13907 227 aa17.32■□□□□ 0.36
DEPDC4-202ENST00000378244 E9PCH4 1651 aa17.32■□□□□ 0.36
DEPDC4-202ENST00000378244 SPATA31D1Q6ZQQ2 1576 aa17.31■□□□□ 0.36
DEPDC4-202ENST00000378244 STAG3Q9UJ98 1225 aa17.31■□□□□ 0.36
DEPDC4-202ENST00000378244 RPRD2Q5VT52 1461 aaKnown RBP17.31■□□□□ 0.36
DEPDC4-202ENST00000378244 PREX1Q8TCU6 1659 aa17.31■□□□□ 0.36
DEPDC4-202ENST00000378244 CHGAP10645 457 aaKnown RBP17.31■□□□□ 0.36
DEPDC4-202ENST00000378244 HRCP23327 699 aa17.3■□□□□ 0.36
DEPDC4-202ENST00000378244 NOS1P29475 1434 aa17.3■□□□□ 0.36
DEPDC4-202ENST00000378244 MYO3AQ8NEV4 1616 aa17.28■□□□□ 0.36
DEPDC4-202ENST00000378244 UGGT1Q9NYU2 1555 aa17.28■□□□□ 0.36
DEPDC4-202ENST00000378244 ACIN1Q9UKV3 1341 aaKnown RBP17.28■□□□□ 0.36
DEPDC4-202ENST00000378244 SYNMO15061 1565 aa17.27■□□□□ 0.36
DEPDC4-202ENST00000378244 SLC52A1Q9NWF4 448 aa17.27■□□□□ 0.35
DEPDC4-202ENST00000378244 CEP170BQ9Y4F5 1589 aaPredicted RBP17.26■□□□□ 0.35
DEPDC4-202ENST00000378244 NLRP1Q9C000 1473 aa17.26■□□□□ 0.35
DEPDC4-202ENST00000378244 A2ML1A8K2U0 1454 aa17.25■□□□□ 0.35
DEPDC4-202ENST00000378244 THEMISQ8N1K5 641 aaPredicted RBP17.25■□□□□ 0.35
DEPDC4-202ENST00000378244 SENP3Q9H4L4 574 aaPredicted RBP17.25■□□□□ 0.35
DEPDC4-202ENST00000378244 PLA2R1Q13018 1463 aa17.24■□□□□ 0.35
DEPDC4-202ENST00000378244 PTPRTO14522 1441 aa17.22■□□□□ 0.35
DEPDC4-202ENST00000378244 NCKAP5LQ9HCH0 1330 aa17.21■□□□□ 0.35
DEPDC4-202ENST00000378244 PIK3C2BO00750 1634 aa17.21■□□□□ 0.35
DEPDC4-202ENST00000378244 NUTM2DQ5VT03 806 aaPredicted RBP17.2■□□□□ 0.34
DEPDC4-202ENST00000378244 SPHKAPQ2M3C7 1700 aa17.19■□□□□ 0.34
DEPDC4-202ENST00000378244 ZNF326Q5BKZ1 582 aaKnown RBP17.19■□□□□ 0.34
DEPDC4-202ENST00000378244 CCDC144AA2RUR9 1427 aa17.18■□□□□ 0.34
DEPDC4-202ENST00000378244 RGL3Q3MIN7 710 aa17.18■□□□□ 0.34
DEPDC4-202ENST00000378244 ZNF142P52746 1687 aaPredicted RBP17.18■□□□□ 0.34
DEPDC4-202ENST00000378244 TRPM2O94759 1503 aa17.17■□□□□ 0.34
DEPDC4-202ENST00000378244 TXNDC2Q86VQ3 553 aa17.17■□□□□ 0.34
DEPDC4-202ENST00000378244 ANKLE2Q86XL3 938 aa17.17■□□□□ 0.34
DEPDC4-202ENST00000378244 LTKP29376 864 aa17.16■□□□□ 0.34
DEPDC4-202ENST00000378244 CLTCL1P53675 1640 aa17.16■□□□□ 0.34
DEPDC4-202ENST00000378244 UBR1Q8IWV7 1749 aa17.15■□□□□ 0.34
DEPDC4-202ENST00000378244 DHX57Q6P158 1386 aaKnown RBP17.15■□□□□ 0.34
DEPDC4-202ENST00000378244 ANKRD30BQ9BXX2 1392 aa17.15■□□□□ 0.34
DEPDC4-202ENST00000378244 TMEM2Q9UHN6 1383 aa17.15■□□□□ 0.34
DEPDC4-202ENST00000378244 EID1Q9Y6B2 187 aa17.14■□□□□ 0.33
DEPDC4-202ENST00000378244 ADGRB3O60242 1522 aa17.13■□□□□ 0.33
DEPDC4-202ENST00000378244 BCANQ96GW7 911 aa17.13■□□□□ 0.33
DEPDC4-202ENST00000378244 PPP1R15AO75807 674 aaPredicted RBP17.13■□□□□ 0.33
DEPDC4-202ENST00000378244 TMEM131LA2VDJ0 1609 aa17.12■□□□□ 0.33
DEPDC4-202ENST00000378244 SIN3AQ96ST3 1273 aa17.11■□□□□ 0.33
DEPDC4-202ENST00000378244 NEUROD1Q13562 356 aa17.1■□□□□ 0.33
DEPDC4-202ENST00000378244 MYO5BQ9ULV0 1848 aa17.09■□□□□ 0.33
DEPDC4-202ENST00000378244 STRCQ7RTU9 1775 aa17.09■□□□□ 0.33
DEPDC4-202ENST00000378244 RIMS2Q9UQ26 1411 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms