RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 FBXW7Q969H0 707 aa12.27□□□□□ -0.44
UBR4-201ENST00000375218 RRBP1Q9P2E9 1410 aaKnown RBP12.27□□□□□ -0.45
UBR4-201ENST00000375218 NOL8Q76FK4 1167 aaKnown RBP12.26□□□□□ -0.45
UBR4-201ENST00000375218 IPO4Q8TEX9 1081 aaKnown RBP12.26□□□□□ -0.45
UBR4-201ENST00000375218 NUP153P49790 1475 aaKnown RBP12.26□□□□□ -0.45
UBR4-201ENST00000375218 KIF14Q15058 1648 aa12.26□□□□□ -0.45
UBR4-201ENST00000375218 VASPP50552 380 aaPredicted RBP12.26□□□□□ -0.45
UBR4-201ENST00000375218 IL27Q8NEV9 243 aa12.25□□□□□ -0.45
UBR4-201ENST00000375218 SYNJ2O15056 1496 aa12.25□□□□□ -0.45
UBR4-201ENST00000375218 SETQ01105 290 aaPredicted RBP12.25□□□□□ -0.45
UBR4-201ENST00000375218 DNAJC5Q9H3Z4 198 aa12.25□□□□□ -0.45
UBR4-201ENST00000375218 MAGI1Q96QZ7 1491 aaPredicted RBP12.25□□□□□ -0.45
UBR4-201ENST00000375218 PTMAP06454 111 aaKnown RBP12.24□□□□□ -0.45
UBR4-201ENST00000375218 RGL2O15211 777 aa12.23□□□□□ -0.45
UBR4-201ENST00000375218 ABCA8O94911 1581 aa12.23□□□□□ -0.45
UBR4-201ENST00000375218 ERCC6Q03468 1493 aa12.23□□□□□ -0.45
UBR4-201ENST00000375218 BRD1O95696 1058 aa12.23□□□□□ -0.45
UBR4-201ENST00000375218 FYCO1Q9BQS8 1478 aa12.23□□□□□ -0.45
UBR4-201ENST00000375218 CASKIN1Q8WXD9 1431 aa12.22□□□□□ -0.45
UBR4-201ENST00000375218 SUPT6HQ7KZ85 1726 aaKnown RBP12.22□□□□□ -0.45
UBR4-201ENST00000375218 FAM193AP78312 1265 aa12.21□□□□□ -0.45
UBR4-201ENST00000375218 RTL5Q5HYW3 569 aaPredicted RBP12.21□□□□□ -0.45
UBR4-201ENST00000375218 FTSJ3Q8IY81 847 aaKnown RBP12.21□□□□□ -0.45
UBR4-201ENST00000375218 MKRN3Q13064 507 aaKnown RBP12.21□□□□□ -0.46
UBR4-201ENST00000375218 DNAJC2Q99543 621 aaKnown RBP12.21□□□□□ -0.46
UBR4-201ENST00000375218 WDR70Q9NW82 654 aa12.21□□□□□ -0.46
UBR4-201ENST00000375218 CDC42BPAQ5VT25 1732 aa12.2□□□□□ -0.46
UBR4-201ENST00000375218 KIAA0586Q9BVV6 1533 aa12.2□□□□□ -0.46
UBR4-201ENST00000375218 PLB1Q6P1J6 1458 aa12.2□□□□□ -0.46
UBR4-201ENST00000375218 MAPKBP1O60336 1514 aa12.19□□□□□ -0.46
UBR4-201ENST00000375218 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
UBR4-201ENST00000375218 ADCY10Q96PN6 1610 aa12.19□□□□□ -0.46
UBR4-201ENST00000375218 RAPGEF6Q8TEU7 1601 aa12.19□□□□□ -0.46
UBR4-201ENST00000375218 RNF216Q9NWF9 866 aaPredicted RBP12.18□□□□□ -0.46
UBR4-201ENST00000375218 KDM5BQ9UGL1 1544 aa12.18□□□□□ -0.46
UBR4-201ENST00000375218 CDC42BPBQ9Y5S2 1711 aa12.17□□□□□ -0.46
UBR4-201ENST00000375218 LAS1LQ9Y4W2 734 aaKnown RBP12.17□□□□□ -0.46
UBR4-201ENST00000375218 GRIPAP1Q4V328 841 aa12.17□□□□□ -0.46
UBR4-201ENST00000375218 LOC102724159A0A0B4J2E5 919 aa12.16□□□□□ -0.46
UBR4-201ENST00000375218 MCCP23508 829 aa12.16□□□□□ -0.46
UBR4-201ENST00000375218 PWP2Q15269 919 aaKnown RBP12.16□□□□□ -0.46
UBR4-201ENST00000375218 P3H3Q8IVL6 736 aa12.16□□□□□ -0.46
UBR4-201ENST00000375218 PLEKHD1A6NEE1 506 aa12.16□□□□□ -0.46
UBR4-201ENST00000375218 EPRSP07814 1512 aaKnown RBP12.16□□□□□ -0.46
UBR4-201ENST00000375218 CHRM1P11229 460 aaPredicted RBP12.14□□□□□ -0.47
UBR4-201ENST00000375218 NEFMP07197 916 aa12.13□□□□□ -0.47
UBR4-201ENST00000375218 CCDC125Q86Z20 511 aa12.13□□□□□ -0.47
UBR4-201ENST00000375218 HSP90AB4PQ58FF6 505 aa12.12□□□□□ -0.47
UBR4-201ENST00000375218 CROCC2H7BZ55 1655 aa12.12□□□□□ -0.47
UBR4-201ENST00000375218 TMTC2Q8N394 836 aa12.12□□□□□ -0.47
UBR4-201ENST00000375218 MAFGO15525 162 aa12.12□□□□□ -0.47
UBR4-201ENST00000375218 EXOC8Q8IYI6 725 aa12.11□□□□□ -0.47
UBR4-201ENST00000375218 ABCC2Q92887 1545 aa12.1□□□□□ -0.47
UBR4-201ENST00000375218 PPP1R1BQ9UD71 204 aaPredicted RBP12.1□□□□□ -0.47
UBR4-201ENST00000375218 RETREG2Q8NC44 543 aa12.08□□□□□ -0.48
UBR4-201ENST00000375218 FOSBP53539 338 aa12.08□□□□□ -0.48
UBR4-201ENST00000375218 TTC37Q6PGP7 1564 aa12.07□□□□□ -0.48
UBR4-201ENST00000375218 ABCC10Q5T3U5 1492 aa12.07□□□□□ -0.48
UBR4-201ENST00000375218 CANXP27824 592 aaKnown RBP12.07□□□□□ -0.48
UBR4-201ENST00000375218 MAPK8IP2Q13387 824 aaPredicted RBP12.07□□□□□ -0.48
UBR4-201ENST00000375218 CLUAP1Q96AJ1 413 aa12.07□□□□□ -0.48
UBR4-201ENST00000375218 HECW1Q76N89 1606 aa12.07□□□□□ -0.48
UBR4-201ENST00000375218 RIPOR2Q9Y4F9 1068 aa12.07□□□□□ -0.48
UBR4-201ENST00000375218 SGSM3Q96HU1 749 aa12.06□□□□□ -0.48
UBR4-201ENST00000375218 PTPN23Q9H3S7 1636 aa12.06□□□□□ -0.48
UBR4-201ENST00000375218 SOX12O15370 315 aa12.06□□□□□ -0.48
UBR4-201ENST00000375218 NCOA2Q15596 1464 aa12.05□□□□□ -0.48
UBR4-201ENST00000375218 TCOF1Q13428 1488 aaKnown RBP12.05□□□□□ -0.48
UBR4-201ENST00000375218 MARCH6O60337 910 aa12.05□□□□□ -0.48
UBR4-201ENST00000375218 GCC2Q8IWJ2 1684 aa12.05□□□□□ -0.48
UBR4-201ENST00000375218 ATP10BO94823 1461 aa12.05□□□□□ -0.48
UBR4-201ENST00000375218 IRF5Q13568 498 aa12.04□□□□□ -0.48
UBR4-201ENST00000375218 ZCCHC11Q5TAX3 1644 aaKnown RBP12.04□□□□□ -0.48
UBR4-201ENST00000375218 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.03□□□□□ -0.48
UBR4-201ENST00000375218 YTHDC1Q96MU7 727 aaKnown RBP12.03□□□□□ -0.48
UBR4-201ENST00000375218 TRAIPQ9BWF2 469 aa12.03□□□□□ -0.48
UBR4-201ENST00000375218 RBM27Q9P2N5 1060 aaKnown RBP12.03□□□□□ -0.48
UBR4-201ENST00000375218 CNGB1Q14028 1251 aaPredicted RBP12.03□□□□□ -0.48
UBR4-201ENST00000375218 SPINK5Q9NQ38 1064 aaPredicted RBP12.03□□□□□ -0.48
UBR4-201ENST00000375218 PRG4Q92954 1404 aaPredicted RBP12.01□□□□□ -0.49
UBR4-201ENST00000375218 DHX57Q6P158 1386 aaKnown RBP12□□□□□ -0.49
UBR4-201ENST00000375218 EHBP1L1Q8N3D4 1523 aa12□□□□□ -0.49
UBR4-201ENST00000375218 SIGLEC1Q9BZZ2 1709 aa12□□□□□ -0.49
UBR4-201ENST00000375218 MYH16Q9H6N6 1097 aa12□□□□□ -0.49
UBR4-201ENST00000375218 SAMD9LQ8IVG5 1584 aa11.99□□□□□ -0.49
UBR4-201ENST00000375218 ZC3H15Q8WU90 426 aaKnown RBP11.99□□□□□ -0.49
UBR4-201ENST00000375218 ACIN1Q9UKV3 1341 aaKnown RBP11.99□□□□□ -0.49
UBR4-201ENST00000375218 ARHGEF12Q9NZN5 1544 aa11.99□□□□□ -0.49
UBR4-201ENST00000375218 PEX14O75381 377 aa11.99□□□□□ -0.49
UBR4-201ENST00000375218 ZNF777Q9ULD5 760 aaPredicted RBP11.99□□□□□ -0.49
UBR4-201ENST00000375218 SPTY2D1Q68D10 685 aaPredicted RBP11.98□□□□□ -0.49
UBR4-201ENST00000375218 FGD6Q6ZV73 1430 aa11.98□□□□□ -0.49
UBR4-201ENST00000375218 DNMT1P26358 1616 aaKnown RBP11.98□□□□□ -0.49
UBR4-201ENST00000375218 CDCA8Q53HL2 280 aa11.98□□□□□ -0.49
UBR4-201ENST00000375218 FMN1Q68DA7 1419 aa11.97□□□□□ -0.49
UBR4-201ENST00000375218 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.97□□□□□ -0.49
UBR4-201ENST00000375218 STK24Q9Y6E0 443 aa11.97□□□□□ -0.49
UBR4-201ENST00000375218 APBB1IPQ7Z5R6 666 aaPredicted RBP11.97□□□□□ -0.49
UBR4-201ENST00000375218 PREX2Q70Z35 1606 aa11.96□□□□□ -0.49
UBR4-201ENST00000375218 RBM26Q5T8P6 1007 aaKnown RBP11.96□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms