RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 NAIPQ13075 1403 aa20.9■□□□□ 0.94
HMGA1-203ENST00000374116 AGLP35573 1532 aa20.9■□□□□ 0.94
HMGA1-203ENST00000374116 BCORL1Q5H9F3 1711 aa20.9■□□□□ 0.94
HMGA1-203ENST00000374116 KDM4FA0A1W2PPD8 638 aa20.89■□□□□ 0.93
HMGA1-203ENST00000374116 PLPPR3Q6T4P5 718 aa20.89■□□□□ 0.93
HMGA1-203ENST00000374116 ERBINQ96RT1 1412 aa20.88■□□□□ 0.93
HMGA1-203ENST00000374116 CLSPNQ9HAW4 1339 aa20.87■□□□□ 0.93
HMGA1-203ENST00000374116 DHX57Q6P158 1386 aaKnown RBP20.87■□□□□ 0.93
HMGA1-203ENST00000374116 HFM1A2PYH4 1435 aa20.87■□□□□ 0.93
HMGA1-203ENST00000374116 GCC2Q8IWJ2 1684 aa20.85■□□□□ 0.93
HMGA1-203ENST00000374116 MADDQ8WXG6 1647 aa20.85■□□□□ 0.93
HMGA1-203ENST00000374116 NEUROD1Q13562 356 aa20.84■□□□□ 0.93
HMGA1-203ENST00000374116 EIF2AK4Q9P2K8 1649 aaKnown RBP20.84■□□□□ 0.93
HMGA1-203ENST00000374116 ADAMTSL3P82987 1691 aa20.83■□□□□ 0.92
HMGA1-203ENST00000374116 MROH1Q8NDA8 1641 aa20.82■□□□□ 0.92
HMGA1-203ENST00000374116 FER1L4A9Z1Z3 1794 aa20.81■□□□□ 0.92
HMGA1-203ENST00000374116 RIMS1Q86UR5 1692 aaKnown RBP20.8■□□□□ 0.92
HMGA1-203ENST00000374116 CENPBP07199 599 aaPredicted RBP20.8■□□□□ 0.92
HMGA1-203ENST00000374116 CEBPAP49715 358 aaPredicted RBP20.8■□□□□ 0.92
HMGA1-203ENST00000374116 ESF1Q9H501 851 aaKnown RBP20.8■□□□□ 0.92
HMGA1-203ENST00000374116 RNF17Q9BXT8 1623 aaKnown RBP20.8■□□□□ 0.92
HMGA1-203ENST00000374116 WASHC2CQ9Y4E1 1318 aa20.79■□□□□ 0.92
HMGA1-203ENST00000374116 SETD5Q9C0A6 1442 aa20.79■□□□□ 0.92
HMGA1-203ENST00000374116 CLTCQ00610 1675 aaKnown RBP20.79■□□□□ 0.92
HMGA1-203ENST00000374116 TRIM52Q96A61 297 aa20.78■□□□□ 0.92
HMGA1-203ENST00000374116 RAB3GAP2Q9H2M9 1393 aa20.78■□□□□ 0.92
HMGA1-203ENST00000374116 DEPDC5O75140 1603 aa20.77■□□□□ 0.92
HMGA1-203ENST00000374116 CEP152O94986 1710 aa20.77■□□□□ 0.92
HMGA1-203ENST00000374116 NUP155O75694 1391 aa20.75■□□□□ 0.91
HMGA1-203ENST00000374116 ZNF316A6NFI3 1004 aaPredicted RBP20.75■□□□□ 0.91
HMGA1-203ENST00000374116 PRDM15P57071 1507 aaPredicted RBP20.75■□□□□ 0.91
HMGA1-203ENST00000374116 DIEXFQ68CQ4 756 aaKnown RBP20.74■□□□□ 0.91
HMGA1-203ENST00000374116 UNC13BO14795 1591 aa20.73■□□□□ 0.91
HMGA1-203ENST00000374116 ABCC3O15438 1527 aa20.72■□□□□ 0.91
HMGA1-203ENST00000374116 KDM5DQ9BY66 1539 aa20.72■□□□□ 0.91
HMGA1-203ENST00000374116 KANK1Q14678 1352 aa20.72■□□□□ 0.91
HMGA1-203ENST00000374116 CFAP65Q6ZU64 1925 aaKnown RBP20.72■□□□□ 0.91
HMGA1-203ENST00000374116 GTF3C3Q9Y5Q9 886 aa20.71■□□□□ 0.91
HMGA1-203ENST00000374116 ZMYM3Q14202 1370 aa20.71■□□□□ 0.91
HMGA1-203ENST00000374116 PTPRMP28827 1452 aa20.71■□□□□ 0.91
HMGA1-203ENST00000374116 VWDEQ8N2E2 1590 aa20.69■□□□□ 0.9
HMGA1-203ENST00000374116 FBXO31Q5XUX0 539 aaPredicted RBP20.69■□□□□ 0.9
HMGA1-203ENST00000374116 PPP6R1Q9UPN7 881 aa20.69■□□□□ 0.9
HMGA1-203ENST00000374116 C3P01024 1663 aa20.68■□□□□ 0.9
HMGA1-203ENST00000374116 FAM135AQ9P2D6 1515 aa20.67■□□□□ 0.9
HMGA1-203ENST00000374116 CAMSAP1Q5T5Y3 1602 aa20.67■□□□□ 0.9
HMGA1-203ENST00000374116 CNTLNQ9NXG0 1405 aa20.66■□□□□ 0.9
HMGA1-203ENST00000374116 FOXD1Q16676 465 aa20.65■□□□□ 0.9
HMGA1-203ENST00000374116 ZC3H13Q5T200 1668 aaKnown RBP20.65■□□□□ 0.9
HMGA1-203ENST00000374116 IQGAP3Q86VI3 1631 aa20.65■□□□□ 0.9
HMGA1-203ENST00000374116 SLC4A1APQ9BWU0 796 aaKnown RBP20.64■□□□□ 0.89
HMGA1-203ENST00000374116 PZPP20742 1482 aa20.63■□□□□ 0.89
HMGA1-203ENST00000374116 MROH2AA6NES4 1674 aa20.63■□□□□ 0.89
HMGA1-203ENST00000374116 NPATQ14207 1427 aa20.62■□□□□ 0.89
HMGA1-203ENST00000374116 LMTK2Q8IWU2 1503 aa20.61■□□□□ 0.89
HMGA1-203ENST00000374116 PKD2Q13563 968 aa20.6■□□□□ 0.89
HMGA1-203ENST00000374116 MPHOSPH9Q99550 1183 aa20.6■□□□□ 0.89
HMGA1-203ENST00000374116 TET3O43151 1660 aa20.6■□□□□ 0.89
HMGA1-203ENST00000374116 EFCAB6Q5THR3 1501 aa20.6■□□□□ 0.89
HMGA1-203ENST00000374116 E9PCH4 1651 aa20.6■□□□□ 0.89
HMGA1-203ENST00000374116 PREX1Q8TCU6 1659 aa20.55■□□□□ 0.88
HMGA1-203ENST00000374116 ARHGAP31Q2M1Z3 1444 aa20.54■□□□□ 0.88
HMGA1-203ENST00000374116 ERVK-7P63135 1459 aa20.53■□□□□ 0.88
HMGA1-203ENST00000374116 TNRQ92752 1358 aa20.5■□□□□ 0.87
HMGA1-203ENST00000374116 SPATA31D1Q6ZQQ2 1576 aa20.5■□□□□ 0.87
HMGA1-203ENST00000374116 UGGT1Q9NYU2 1555 aa20.5■□□□□ 0.87
HMGA1-203ENST00000374116 SYNMO15061 1565 aa20.49■□□□□ 0.87
HMGA1-203ENST00000374116 RPRD2Q5VT52 1461 aaKnown RBP20.48■□□□□ 0.87
HMGA1-203ENST00000374116 NOS1P29475 1434 aa20.47■□□□□ 0.87
HMGA1-203ENST00000374116 IDI1Q13907 227 aa20.46■□□□□ 0.87
HMGA1-203ENST00000374116 SETD1BQ9UPS6 1966 aaKnown RBP20.46■□□□□ 0.87
HMGA1-203ENST00000374116 PLA2R1Q13018 1463 aa20.46■□□□□ 0.87
HMGA1-203ENST00000374116 SPHKAPQ2M3C7 1700 aa20.46■□□□□ 0.87
HMGA1-203ENST00000374116 MYO3AQ8NEV4 1616 aa20.46■□□□□ 0.87
HMGA1-203ENST00000374116 HSPA2P54652 639 aa20.45■□□□□ 0.86
HMGA1-203ENST00000374116 UHRF1BP1Q6BDS2 1440 aa20.43■□□□□ 0.86
HMGA1-203ENST00000374116 CHGAP10645 457 aaKnown RBP20.43■□□□□ 0.86
HMGA1-203ENST00000374116 PTPRTO14522 1441 aa20.42■□□□□ 0.86
HMGA1-203ENST00000374116 LMTK3Q96Q04 1460 aa20.41■□□□□ 0.86
HMGA1-203ENST00000374116 PIK3C2BO00750 1634 aa20.4■□□□□ 0.86
HMGA1-203ENST00000374116 TIMELESSQ9UNS1 1208 aa20.4■□□□□ 0.86
HMGA1-203ENST00000374116 CLTCL1P53675 1640 aa20.39■□□□□ 0.85
HMGA1-203ENST00000374116 CEP170BQ9Y4F5 1589 aaPredicted RBP20.39■□□□□ 0.85
HMGA1-203ENST00000374116 STAG3Q9UJ98 1225 aa20.39■□□□□ 0.85
HMGA1-203ENST00000374116 TRPM2O94759 1503 aa20.38■□□□□ 0.85
HMGA1-203ENST00000374116 SIN3AQ96ST3 1273 aa20.37■□□□□ 0.85
HMGA1-203ENST00000374116 MYO5BQ9ULV0 1848 aa20.37■□□□□ 0.85
HMGA1-203ENST00000374116 ANKRD30BQ9BXX2 1392 aa20.37■□□□□ 0.85
HMGA1-203ENST00000374116 SENP3Q9H4L4 574 aaPredicted RBP20.37■□□□□ 0.85
HMGA1-203ENST00000374116 SLC52A1Q9NWF4 448 aa20.37■□□□□ 0.85
HMGA1-203ENST00000374116 NLRP1Q9C000 1473 aa20.36■□□□□ 0.85
HMGA1-203ENST00000374116 A2ML1A8K2U0 1454 aa20.36■□□□□ 0.85
HMGA1-203ENST00000374116 ZNF142P52746 1687 aaPredicted RBP20.34■□□□□ 0.85
HMGA1-203ENST00000374116 CCDC144AA2RUR9 1427 aa20.34■□□□□ 0.85
HMGA1-203ENST00000374116 UBR1Q8IWV7 1749 aa20.34■□□□□ 0.85
HMGA1-203ENST00000374116 NUTM2DQ5VT03 806 aaPredicted RBP20.34■□□□□ 0.85
HMGA1-203ENST00000374116 RGL3Q3MIN7 710 aa20.32■□□□□ 0.84
HMGA1-203ENST00000374116 TMEM131LA2VDJ0 1609 aa20.31■□□□□ 0.84
HMGA1-203ENST00000374116 ZNF326Q5BKZ1 582 aaKnown RBP20.3■□□□□ 0.84
HMGA1-203ENST00000374116 MIER1Q8N108 512 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms