RNA–Protein interactions for RNA: ENST00000368298.2

LMNA-204, Transcript of lamin A/C, humanhuman

TSL 1 (best)

Gene LMNA, Length 1,475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-204ENST00000368298 GGT6Q6P531 493 aa28.37■■■□□ 2.13
LMNA-204ENST00000368298 CNTLNQ9NXG0 1405 aa28.35■■■□□ 2.13
LMNA-204ENST00000368298 FAM135AQ9P2D6 1515 aa28.35■■■□□ 2.13
LMNA-204ENST00000368298 ANKRD50Q9ULJ7 1429 aa28.32■■■□□ 2.12
LMNA-204ENST00000368298 MROH1Q8NDA8 1641 aa28.3■■■□□ 2.12
LMNA-204ENST00000368298 ESF1Q9H501 851 aaKnown RBP28.3■■■□□ 2.12
LMNA-204ENST00000368298 MROH2AA6NES4 1674 aa28.3■■■□□ 2.12
LMNA-204ENST00000368298 DEPDC5O75140 1603 aa28.3■■■□□ 2.12
LMNA-204ENST00000368298 PRDM15P57071 1507 aaPredicted RBP28.26■■■□□ 2.12
LMNA-204ENST00000368298 CLTCQ00610 1675 aaKnown RBP28.26■■■□□ 2.11
LMNA-204ENST00000368298 KDM5DQ9BY66 1539 aa28.26■■■□□ 2.11
LMNA-204ENST00000368298 C3P01024 1663 aa28.23■■■□□ 2.11
LMNA-204ENST00000368298 WASHC2CQ9Y4E1 1318 aa28.23■■■□□ 2.11
LMNA-204ENST00000368298 ZMYM3Q14202 1370 aa28.23■■■□□ 2.11
LMNA-204ENST00000368298 ZC3H13Q5T200 1668 aaKnown RBP28.23■■■□□ 2.11
LMNA-204ENST00000368298 HFM1A2PYH4 1435 aa28.22■■■□□ 2.11
LMNA-204ENST00000368298 NAIPQ13075 1403 aa28.22■■■□□ 2.11
LMNA-204ENST00000368298 GCC2Q8IWJ2 1684 aa28.2■■■□□ 2.11
LMNA-204ENST00000368298 VWDEQ8N2E2 1590 aa28.19■■■□□ 2.1
LMNA-204ENST00000368298 ABCC3O15438 1527 aa28.19■■■□□ 2.1
LMNA-204ENST00000368298 CEBPAP49715 358 aaPredicted RBP28.18■■■□□ 2.1
LMNA-204ENST00000368298 UNC13BO14795 1591 aa28.17■■■□□ 2.1
LMNA-204ENST00000368298 KANK1Q14678 1352 aa28.16■■■□□ 2.1
LMNA-204ENST00000368298 LMTK2Q8IWU2 1503 aa28.14■■■□□ 2.1
LMNA-204ENST00000368298 NPATQ14207 1427 aa28.14■■■□□ 2.09
LMNA-204ENST00000368298 PLPPR3Q6T4P5 718 aa28.14■■■□□ 2.09
LMNA-204ENST00000368298 CEP152O94986 1710 aa28.13■■■□□ 2.09
LMNA-204ENST00000368298 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.13■■■□□ 2.091e-7■□□□□ 10.9
LMNA-204ENST00000368298 SETD1BQ9UPS6 1966 aaKnown RBP28.12■■■□□ 2.09
LMNA-204ENST00000368298 PZPP20742 1482 aa28.12■■■□□ 2.09
LMNA-204ENST00000368298 CAMSAP1Q5T5Y3 1602 aa28.1■■■□□ 2.09
LMNA-204ENST00000368298 ARHGAP31Q2M1Z3 1444 aa28.1■■■□□ 2.09
LMNA-204ENST00000368298 IQGAP3Q86VI3 1631 aa28.05■■■□□ 2.08
LMNA-204ENST00000368298 PREX1Q8TCU6 1659 aa28.02■■■□□ 2.08
LMNA-204ENST00000368298 NUP155O75694 1391 aa28.02■■■□□ 2.08
LMNA-204ENST00000368298 TET3O43151 1660 aa28.01■■■□□ 2.07
LMNA-204ENST00000368298 FBXO31Q5XUX0 539 aaPredicted RBP28.01■■■□□ 2.07
LMNA-204ENST00000368298 EFCAB6Q5THR3 1501 aa28■■■□□ 2.07
LMNA-204ENST00000368298 SETD5Q9C0A6 1442 aa28■■■□□ 2.07
LMNA-204ENST00000368298 LMTK3Q96Q04 1460 aa28■■■□□ 2.07
LMNA-204ENST00000368298 SPATA31D1Q6ZQQ2 1576 aa27.99■■■□□ 2.07
LMNA-204ENST00000368298 RPRD2Q5VT52 1461 aaKnown RBP27.98■■■□□ 2.07
LMNA-204ENST00000368298 ACIN1Q9UKV3 1341 aaKnown RBP27.97■■■□□ 2.07
LMNA-204ENST00000368298 ERVK-7P63135 1459 aa27.97■■■□□ 2.07
LMNA-204ENST00000368298 UHRF1BP1Q6BDS2 1440 aa27.97■■■□□ 2.07
LMNA-204ENST00000368298 TNRQ92752 1358 aa27.95■■■□□ 2.06
LMNA-204ENST00000368298 MYO3AQ8NEV4 1616 aa27.92■■■□□ 2.06
LMNA-204ENST00000368298 CFAP65Q6ZU64 1925 aaKnown RBP27.91■■■□□ 2.06
LMNA-204ENST00000368298 E9PCH4 1651 aa27.91■■■□□ 2.06
LMNA-204ENST00000368298 NOS1P29475 1434 aa27.9■■■□□ 2.06
LMNA-204ENST00000368298 ZNF142P52746 1687 aaPredicted RBP27.9■■■□□ 2.06
LMNA-204ENST00000368298 HRCP23327 699 aa27.89■■■□□ 2.06
LMNA-204ENST00000368298 NLRP1Q9C000 1473 aa27.89■■■□□ 2.06
LMNA-204ENST00000368298 RAB3GAP2Q9H2M9 1393 aa27.89■■■□□ 2.05
LMNA-204ENST00000368298 TRIM52Q96A61 297 aa27.88■■■□□ 2.05
LMNA-204ENST00000368298 TRIM26Q12899 539 aaPredicted RBP27.87■■■□□ 2.05
LMNA-204ENST00000368298 A2ML1A8K2U0 1454 aa27.86■■■□□ 2.05
LMNA-204ENST00000368298 CEP170BQ9Y4F5 1589 aaPredicted RBP27.86■■■□□ 2.05
LMNA-204ENST00000368298 SYNMO15061 1565 aa27.83■■■□□ 2.05
LMNA-204ENST00000368298 HSPA2P54652 639 aa27.82■■■□□ 2.04
LMNA-204ENST00000368298 SLC4A1APQ9BWU0 796 aaKnown RBP27.79■■■□□ 2.04
LMNA-204ENST00000368298 SLC52A1Q9NWF4 448 aa27.78■■■□□ 2.04
LMNA-204ENST00000368298 PTPRTO14522 1441 aa27.77■■■□□ 2.04
LMNA-204ENST00000368298 UGGT1Q9NYU2 1555 aa27.76■■■□□ 2.03
LMNA-204ENST00000368298 PKD2Q13563 968 aa27.76■■■□□ 2.03
LMNA-204ENST00000368298 MPHOSPH9Q99550 1183 aa27.76■■■□□ 2.03
LMNA-204ENST00000368298 IDI1Q13907 227 aa27.75■■■□□ 2.03
LMNA-204ENST00000368298 KDM5AP29375 1690 aaKnown RBP27.74■■■□□ 2.03
LMNA-204ENST00000368298 PIK3C2BO00750 1634 aa27.74■■■□□ 2.03
LMNA-204ENST00000368298 SPHKAPQ2M3C7 1700 aa27.74■■■□□ 2.03
LMNA-204ENST00000368298 PLA2R1Q13018 1463 aa27.72■■■□□ 2.03
LMNA-204ENST00000368298 UBR1Q8IWV7 1749 aa27.72■■■□□ 2.03
LMNA-204ENST00000368298 THEMISQ8N1K5 641 aaPredicted RBP27.71■■■□□ 2.03
LMNA-204ENST00000368298 STRCQ7RTU9 1775 aa27.68■■■□□ 2.02
LMNA-204ENST00000368298 TRPM2O94759 1503 aa27.68■■■□□ 2.02
LMNA-204ENST00000368298 ADGRB3O60242 1522 aa27.64■■■□□ 2.02
LMNA-204ENST00000368298 TMEM131LA2VDJ0 1609 aa27.62■■■□□ 2.01
LMNA-204ENST00000368298 ARHGAP23Q9P227 1491 aa27.62■■■□□ 2.01
LMNA-204ENST00000368298 SLIT1O75093 1534 aa27.61■■■□□ 2.01
LMNA-204ENST00000368298 FOXD1Q16676 465 aa27.6■■■□□ 2.01
LMNA-204ENST00000368298 STAG3Q9UJ98 1225 aa27.6■■■□□ 2.01
LMNA-204ENST00000368298 PCGF6Q9BYE7 350 aa27.59■■■□□ 2.01
LMNA-204ENST00000368298 CLTCL1P53675 1640 aa27.59■■■□□ 2.01
LMNA-204ENST00000368298 TMEM2Q9UHN6 1383 aa27.58■■■□□ 2.01
LMNA-204ENST00000368298 ANKLE2Q86XL3 938 aa27.57■■■□□ 2
LMNA-204ENST00000368298 DMRT2Q9Y5R5 561 aa27.57■■■□□ 2
LMNA-204ENST00000368298 POLR1AO95602 1720 aaPredicted RBP27.56■■■□□ 2
LMNA-204ENST00000368298 MYO5BQ9ULV0 1848 aa27.55■■■□□ 2
LMNA-204ENST00000368298 NCKAP5LQ9HCH0 1330 aa27.55■■■□□ 2
LMNA-204ENST00000368298 MED14O60244 1454 aa27.53■■■□□ 2
LMNA-204ENST00000368298 NEURL4Q96JN8 1562 aa27.52■■■□□ 2
LMNA-204ENST00000368298 KIF1BO60333 1816 aa27.51■■□□□ 1.99
LMNA-204ENST00000368298 SCAF11Q99590 1463 aaKnown RBP27.5■■□□□ 1.99
LMNA-204ENST00000368298 CCDC144AA2RUR9 1427 aa27.5■■□□□ 1.99
LMNA-204ENST00000368298 ANKRD30BQ9BXX2 1392 aa27.5■■□□□ 1.99
LMNA-204ENST00000368298 ZFYVE9O95405 1425 aa27.5■■□□□ 1.99
LMNA-204ENST00000368298 CHGAP10645 457 aaKnown RBP27.49■■□□□ 1.99
LMNA-204ENST00000368298 LTKP29376 864 aa27.49■■□□□ 1.99
LMNA-204ENST00000368298 ILDR1Q86SU0 546 aaPredicted RBP27.49■■□□□ 1.99
LMNA-204ENST00000368298 EID1Q9Y6B2 187 aa27.49■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms