RNA–Protein interactions for RNA: ENST00000358207.9

SMARCAL1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SMARCAL1, Length 3,056 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCAL1-202ENST00000358207 ITGAEP38570 1179 aa13.2□□□□□ -0.3
SMARCAL1-202ENST00000358207 RNF17Q9BXT8 1623 aaKnown RBP13.2□□□□□ -0.3
SMARCAL1-202ENST00000358207 ATP7AQ04656 1500 aa13.2□□□□□ -0.3
SMARCAL1-202ENST00000358207 RTEL1-TNFRSF6BF6WH68 1400 aa13.19□□□□□ -0.3
SMARCAL1-202ENST00000358207 EFCAB2Q5VUJ9 269 aa13.19□□□□□ -0.3
SMARCAL1-202ENST00000358207 MYO3AQ8NEV4 1616 aa13.17□□□□□ -0.3
SMARCAL1-202ENST00000358207 CROCC2H7BZ55 1655 aa13.17□□□□□ -0.3
SMARCAL1-202ENST00000358207 PODXL2Q9NZ53 605 aa13.16□□□□□ -0.3
SMARCAL1-202ENST00000358207 PTPRTO14522 1441 aa13.16□□□□□ -0.3
SMARCAL1-202ENST00000358207 VPS8Q8N3P4 1428 aa13.16□□□□□ -0.3
SMARCAL1-202ENST00000358207 SYCP2Q9BX26 1530 aa13.16□□□□□ -0.3
SMARCAL1-202ENST00000358207 RAPGEF3O95398 923 aa13.14□□□□□ -0.31
SMARCAL1-202ENST00000358207 KDM5AP29375 1690 aaKnown RBP13.13□□□□□ -0.31
SMARCAL1-202ENST00000358207 PLA2R1Q13018 1463 aa13.13□□□□□ -0.31
SMARCAL1-202ENST00000358207 POLR1AO95602 1720 aaPredicted RBP13.13□□□□□ -0.31
SMARCAL1-202ENST00000358207 TRAPPC8Q9Y2L5 1435 aa13.13□□□□□ -0.31
SMARCAL1-202ENST00000358207 MBD5Q9P267 1494 aa13.13□□□□□ -0.31
SMARCAL1-202ENST00000358207 KDM5DQ9BY66 1539 aa13.12□□□□□ -0.31
SMARCAL1-202ENST00000358207 CLTCQ00610 1675 aaKnown RBP13.12□□□□□ -0.31
SMARCAL1-202ENST00000358207 PPP6R1Q9UPN7 881 aa13.1□□□□□ -0.31
SMARCAL1-202ENST00000358207 DEPDC5O75140 1603 aa13.09□□□□□ -0.31
SMARCAL1-202ENST00000358207 NBR1Q14596 966 aa13.09□□□□□ -0.31
SMARCAL1-202ENST00000358207 LTBP4Q8N2S1 1624 aa13.07□□□□□ -0.32
SMARCAL1-202ENST00000358207 A2MP01023 1474 aa13.06□□□□□ -0.32
SMARCAL1-202ENST00000358207 SHANK2Q9UPX8 1470 aa13.06□□□□□ -0.32
SMARCAL1-202ENST00000358207 NCOA1Q15788 1441 aa13.06□□□□□ -0.32
SMARCAL1-202ENST00000358207 CAMSAP2Q08AD1 1489 aa13.05□□□□□ -0.32
SMARCAL1-202ENST00000358207 CEP170BQ9Y4F5 1589 aaPredicted RBP13.05□□□□□ -0.32
SMARCAL1-202ENST00000358207 UHRF1BP1Q6BDS2 1440 aa13.04□□□□□ -0.32
SMARCAL1-202ENST00000358207 TCOF1Q13428 1488 aaKnown RBP13.04□□□□□ -0.32
SMARCAL1-202ENST00000358207 CCDC141Q6ZP82 1450 aa13.04□□□□□ -0.32
SMARCAL1-202ENST00000358207 MROH1Q8NDA8 1641 aa13.04□□□□□ -0.32
SMARCAL1-202ENST00000358207 FBXO41Q8TF61 875 aa13.03□□□□□ -0.32
SMARCAL1-202ENST00000358207 PTPRKQ15262 1439 aa13.03□□□□□ -0.32
SMARCAL1-202ENST00000358207 MIA2Q96PC5 1412 aa13.02□□□□□ -0.33
SMARCAL1-202ENST00000358207 FAM50AQ14320 339 aaKnown RBP13.01□□□□□ -0.33
SMARCAL1-202ENST00000358207 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
SMARCAL1-202ENST00000358207 DNMT1P26358 1616 aaKnown RBP13.01□□□□□ -0.33
SMARCAL1-202ENST00000358207 NCOA2Q15596 1464 aa13□□□□□ -0.33
SMARCAL1-202ENST00000358207 PRDM15P57071 1507 aaPredicted RBP13□□□□□ -0.33
SMARCAL1-202ENST00000358207 PZPP20742 1482 aa13□□□□□ -0.33
SMARCAL1-202ENST00000358207 A2ML1A8K2U0 1454 aa12.99□□□□□ -0.33
SMARCAL1-202ENST00000358207 LRRC9Q6ZRR7 1453 aa12.99□□□□□ -0.33
SMARCAL1-202ENST00000358207 VWDEQ8N2E2 1590 aa12.99□□□□□ -0.33
SMARCAL1-202ENST00000358207 SYNMO15061 1565 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 NEURL4Q96JN8 1562 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 PAK3O75914 559 aaPredicted RBP12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 ILDR1Q86SU0 546 aaPredicted RBP12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 CAMSAP1Q5T5Y3 1602 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 RSPH4AQ5TD94 716 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 CCNB3Q8WWL7 1395 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 LMTK2Q8IWU2 1503 aa12.98□□□□□ -0.33
SMARCAL1-202ENST00000358207 MED14O60244 1454 aa12.96□□□□□ -0.33
SMARCAL1-202ENST00000358207 DHX29Q7Z478 1369 aaKnown RBP12.96□□□□□ -0.34
SMARCAL1-202ENST00000358207 NEFLP07196 543 aa12.95□□□□□ -0.34
SMARCAL1-202ENST00000358207 NLRP1Q9C000 1473 aa12.95□□□□□ -0.34
SMARCAL1-202ENST00000358207 DUOX2Q9NRD8 1548 aa12.94□□□□□ -0.34
SMARCAL1-202ENST00000358207 DMRT2Q9Y5R5 561 aa12.94□□□□□ -0.34
SMARCAL1-202ENST00000358207 ABCC3O15438 1527 aa12.93□□□□□ -0.34
SMARCAL1-202ENST00000358207 NOP58Q9Y2X3 529 aaKnown RBP12.93□□□□□ -0.34
SMARCAL1-202ENST00000358207 CPS1P31327 1500 aa12.93□□□□□ -0.34
SMARCAL1-202ENST00000358207 UBR1Q8IWV7 1749 aa12.93□□□□□ -0.34
SMARCAL1-202ENST00000358207 ARHGAP31Q2M1Z3 1444 aa12.93□□□□□ -0.34
SMARCAL1-202ENST00000358207 ZMYND15Q9H091 742 aa12.92□□□□□ -0.34
SMARCAL1-202ENST00000358207 TIMELESSQ9UNS1 1208 aa12.92□□□□□ -0.34
SMARCAL1-202ENST00000358207 MTUS2Q5JR59 1369 aa12.92□□□□□ -0.34
SMARCAL1-202ENST00000358207 AFAP1Q8N556 730 aa12.91□□□□□ -0.34
SMARCAL1-202ENST00000358207 CEP152O94986 1710 aa12.91□□□□□ -0.34
SMARCAL1-202ENST00000358207 ARID4BQ4LE39 1312 aaPredicted RBP12.91□□□□□ -0.34
SMARCAL1-202ENST00000358207 SPAG9O60271 1321 aaKnown RBP12.9□□□□□ -0.34
SMARCAL1-202ENST00000358207 ERBINQ96RT1 1412 aa12.9□□□□□ -0.34
SMARCAL1-202ENST00000358207 ADGRL2O95490 1459 aa12.9□□□□□ -0.34
SMARCAL1-202ENST00000358207 PTPN23Q9H3S7 1636 aa12.9□□□□□ -0.34
SMARCAL1-202ENST00000358207 MYOM3Q5VTT5 1437 aa12.89□□□□□ -0.35
SMARCAL1-202ENST00000358207 IQGAP1P46940 1657 aa12.89□□□□□ -0.35
SMARCAL1-202ENST00000358207 ZMYM3Q14202 1370 aa12.89□□□□□ -0.35
SMARCAL1-202ENST00000358207 SLIT1O75093 1534 aa12.88□□□□□ -0.35
SMARCAL1-202ENST00000358207 GCC2Q8IWJ2 1684 aa12.88□□□□□ -0.35
SMARCAL1-202ENST00000358207 UNC13BO14795 1591 aa12.87□□□□□ -0.35
SMARCAL1-202ENST00000358207 ARHGAP23Q9P227 1491 aa12.86□□□□□ -0.35
SMARCAL1-202ENST00000358207 UGGT1Q9NYU2 1555 aa12.86□□□□□ -0.35
SMARCAL1-202ENST00000358207 CHIC2Q9UKJ5 165 aa12.85□□□□□ -0.35
SMARCAL1-202ENST00000358207 PKD2Q13563 968 aa12.84□□□□□ -0.35
SMARCAL1-202ENST00000358207 CERKQ8TCT0 537 aa12.84□□□□□ -0.35
SMARCAL1-202ENST00000358207 CFDP1Q9UEE9 299 aaPredicted RBP12.84□□□□□ -0.35
SMARCAL1-202ENST00000358207 ERVK-7P63135 1459 aa12.83□□□□□ -0.35
SMARCAL1-202ENST00000358207 PIK3C2BO00750 1634 aa12.83□□□□□ -0.35
SMARCAL1-202ENST00000358207 C11orf95C9JLR9 678 aaPredicted RBP12.83□□□□□ -0.36
SMARCAL1-202ENST00000358207 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
SMARCAL1-202ENST00000358207 NWD1Q149M9 1564 aa12.83□□□□□ -0.36
SMARCAL1-202ENST00000358207 VSIG10Q8N0Z9 540 aa12.83□□□□□ -0.36
SMARCAL1-202ENST00000358207 ZNF777Q9ULD5 760 aaPredicted RBP12.82□□□□□ -0.36
SMARCAL1-202ENST00000358207 TET3O43151 1660 aa12.82□□□□□ -0.36
SMARCAL1-202ENST00000358207 STRCP1A6NGW2 1772 aa12.82□□□□□ -0.36
SMARCAL1-202ENST00000358207 XIRP1Q702N8 1843 aaKnown RBP12.82□□□□□ -0.36
SMARCAL1-202ENST00000358207 BRPF3Q9ULD4 1205 aa12.81□□□□□ -0.36
SMARCAL1-202ENST00000358207 WASHC2AQ641Q2 1341 aa12.81□□□□□ -0.36
SMARCAL1-202ENST00000358207 ALKQ9UM73 1620 aa12.8□□□□□ -0.36
SMARCAL1-202ENST00000358207 EFCAB6Q5THR3 1501 aa12.8□□□□□ -0.36
SMARCAL1-202ENST00000358207 RPRD2Q5VT52 1461 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms