RNA–Protein interactions for RNA: ENST00000334060.8

SHOX-201, Transcript of short stature homeobox, humanhuman

TSL 5 BASIC

Gene SHOX, Length 1,951 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-201ENST00000334060 EIF2AK4Q9P2K8 1649 aaKnown RBP24.6■■□□□ 1.53
SHOX-201ENST00000334060 UNC13BO14795 1591 aa24.6■■□□□ 1.53
SHOX-201ENST00000334060 FOXD1Q16676 465 aa24.6■■□□□ 1.53
SHOX-201ENST00000334060 PZPP20742 1482 aa24.59■■□□□ 1.53
SHOX-201ENST00000334060 DEPDC5O75140 1603 aa24.59■■□□□ 1.53
SHOX-201ENST00000334060 NUP155O75694 1391 aa24.59■■□□□ 1.53
SHOX-201ENST00000334060 RNF17Q9BXT8 1623 aaKnown RBP24.57■■□□□ 1.52
SHOX-201ENST00000334060 AGLP35573 1532 aa24.56■■□□□ 1.52
SHOX-201ENST00000334060 BCORL1Q5H9F3 1711 aa24.56■■□□□ 1.52
SHOX-201ENST00000334060 PRDM15P57071 1507 aaPredicted RBP24.55■■□□□ 1.52
SHOX-201ENST00000334060 DHX57Q6P158 1386 aaKnown RBP24.54■■□□□ 1.52
SHOX-201ENST00000334060 CEP152O94986 1710 aa24.54■■□□□ 1.52
SHOX-201ENST00000334060 FAM135AQ9P2D6 1515 aa24.53■■□□□ 1.52
SHOX-201ENST00000334060 VWDEQ8N2E2 1590 aa24.52■■□□□ 1.52
SHOX-201ENST00000334060 MPHOSPH9Q99550 1183 aa24.49■■□□□ 1.51
SHOX-201ENST00000334060 IQGAP3Q86VI3 1631 aa24.49■■□□□ 1.51
SHOX-201ENST00000334060 KDM5DQ9BY66 1539 aa24.49■■□□□ 1.51
SHOX-201ENST00000334060 SLC4A1APQ9BWU0 796 aaKnown RBP24.48■■□□□ 1.51
SHOX-201ENST00000334060 ABCC3O15438 1527 aa24.48■■□□□ 1.51
SHOX-201ENST00000334060 HRCP23327 699 aa24.47■■□□□ 1.51
SHOX-201ENST00000334060 CLTCQ00610 1675 aaKnown RBP24.45■■□□□ 1.5
SHOX-201ENST00000334060 WASHC2CQ9Y4E1 1318 aa24.45■■□□□ 1.5
SHOX-201ENST00000334060 PKD2Q13563 968 aa24.45■■□□□ 1.5
SHOX-201ENST00000334060 PLPPR3Q6T4P5 718 aa24.43■■□□□ 1.5
SHOX-201ENST00000334060 MADDQ8WXG6 1647 aa24.41■■□□□ 1.5
SHOX-201ENST00000334060 E9PCH4 1651 aa24.41■■□□□ 1.5
SHOX-201ENST00000334060 CEBPAP49715 358 aaPredicted RBP24.4■■□□□ 1.5
SHOX-201ENST00000334060 CAMSAP1Q5T5Y3 1602 aa24.39■■□□□ 1.5
SHOX-201ENST00000334060 KANK1Q14678 1352 aa24.38■■□□□ 1.49
SHOX-201ENST00000334060 NPATQ14207 1427 aa24.38■■□□□ 1.49
SHOX-201ENST00000334060 FBXO31Q5XUX0 539 aaPredicted RBP24.38■■□□□ 1.49
SHOX-201ENST00000334060 CFAP65Q6ZU64 1925 aaKnown RBP24.38■■□□□ 1.49
SHOX-201ENST00000334060 EFCAB6Q5THR3 1501 aa24.37■■□□□ 1.49
SHOX-201ENST00000334060 TET3O43151 1660 aa24.37■■□□□ 1.49
SHOX-201ENST00000334060 CCER1Q8TC90 406 aaPredicted RBP24.37■■□□□ 1.49
SHOX-201ENST00000334060 FER1L4A9Z1Z3 1794 aa24.37■■□□□ 1.49
SHOX-201ENST00000334060 ADAMTSL3P82987 1691 aa24.36■■□□□ 1.49
SHOX-201ENST00000334060 LMTK2Q8IWU2 1503 aa24.36■■□□□ 1.49
SHOX-201ENST00000334060 PLA2R1Q13018 1463 aa24.35■■□□□ 1.49
SHOX-201ENST00000334060 SIN3AQ96ST3 1273 aa24.34■■□□□ 1.49
SHOX-201ENST00000334060 RIMS1Q86UR5 1692 aaKnown RBP24.34■■□□□ 1.49
SHOX-201ENST00000334060 UGGT1Q9NYU2 1555 aa24.33■■□□□ 1.49
SHOX-201ENST00000334060 ZC3H13Q5T200 1668 aaKnown RBP24.32■■□□□ 1.48
SHOX-201ENST00000334060 KDM4FA0A1W2PPD8 638 aa24.32■■□□□ 1.48
SHOX-201ENST00000334060 ZMYM3Q14202 1370 aa24.31■■□□□ 1.48
SHOX-201ENST00000334060 ANKRD30BQ9BXX2 1392 aa24.28■■□□□ 1.48
SHOX-201ENST00000334060 C3P01024 1663 aa24.27■■□□□ 1.48
SHOX-201ENST00000334060 ESF1Q9H501 851 aaKnown RBP24.27■■□□□ 1.48
SHOX-201ENST00000334060 SYNMO15061 1565 aa24.25■■□□□ 1.47
SHOX-201ENST00000334060 PREX1Q8TCU6 1659 aa24.24■■□□□ 1.47
SHOX-201ENST00000334060 NEUROD1Q13562 356 aa24.23■■□□□ 1.47
SHOX-201ENST00000334060 PPP6R1Q9UPN7 881 aa24.23■■□□□ 1.47
SHOX-201ENST00000334060 SPHKAPQ2M3C7 1700 aa24.23■■□□□ 1.47
SHOX-201ENST00000334060 ARHGAP31Q2M1Z3 1444 aa24.23■■□□□ 1.47
SHOX-201ENST00000334060 ERVK-7P63135 1459 aa24.22■■□□□ 1.47
SHOX-201ENST00000334060 PTPRTO14522 1441 aa24.21■■□□□ 1.47
SHOX-201ENST00000334060 MROH2AA6NES4 1674 aa24.21■■□□□ 1.47
SHOX-201ENST00000334060 NOS1P29475 1434 aa24.2■■□□□ 1.46
SHOX-201ENST00000334060 CLTCL1P53675 1640 aa24.2■■□□□ 1.46
SHOX-201ENST00000334060 PTPRMP28827 1452 aa24.19■■□□□ 1.46
SHOX-201ENST00000334060 CNTLNQ9NXG0 1405 aa24.19■■□□□ 1.46
SHOX-201ENST00000334060 TRPM2O94759 1503 aa24.17■■□□□ 1.46
SHOX-201ENST00000334060 RPRD2Q5VT52 1461 aaKnown RBP24.17■■□□□ 1.46
SHOX-201ENST00000334060 SPATA31D1Q6ZQQ2 1576 aa24.16■■□□□ 1.46
SHOX-201ENST00000334060 ACIN1Q9UKV3 1341 aaKnown RBP24.13■■□□□ 1.45
SHOX-201ENST00000334060 IDI1Q13907 227 aa24.13■■□□□ 1.45
SHOX-201ENST00000334060 CCDC144AA2RUR9 1427 aa24.11■■□□□ 1.45
SHOX-201ENST00000334060 PIK3C2BO00750 1634 aa24.1■■□□□ 1.45
SHOX-201ENST00000334060 TNRQ92752 1358 aa24.09■■□□□ 1.45
SHOX-201ENST00000334060 RGL3Q3MIN7 710 aa24.08■■□□□ 1.45
SHOX-201ENST00000334060 CHGAP10645 457 aaKnown RBP24.07■■□□□ 1.44
SHOX-201ENST00000334060 MYO5BQ9ULV0 1848 aa24.05■■□□□ 1.44
SHOX-201ENST00000334060 SENP3Q9H4L4 574 aaPredicted RBP24.05■■□□□ 1.44
SHOX-201ENST00000334060 MYO3AQ8NEV4 1616 aa24.03■■□□□ 1.44
SHOX-201ENST00000334060 SPATA31E1Q6ZUB1 1445 aa24.03■■□□□ 1.44
SHOX-201ENST00000334060 NUTM2DQ5VT03 806 aaPredicted RBP24.02■■□□□ 1.44
SHOX-201ENST00000334060 CLSPNQ9HAW4 1339 aa24.01■■□□□ 1.43
SHOX-201ENST00000334060 L3MBTL2Q969R5 705 aa24■■□□□ 1.43
SHOX-201ENST00000334060 TMEM131LA2VDJ0 1609 aa23.99■■□□□ 1.43
SHOX-201ENST00000334060 ADGRB3O60242 1522 aa23.99■■□□□ 1.43
SHOX-201ENST00000334060 SLC52A1Q9NWF4 448 aa23.96■■□□□ 1.43
SHOX-201ENST00000334060 KIF1BO60333 1816 aa23.96■■□□□ 1.43
SHOX-201ENST00000334060 A2ML1A8K2U0 1454 aa23.96■■□□□ 1.43
SHOX-201ENST00000334060 UBR1Q8IWV7 1749 aa23.95■■□□□ 1.42
SHOX-201ENST00000334060 KDM2AQ9Y2K7 1162 aa23.94■■□□□ 1.42
SHOX-201ENST00000334060 CEP170BQ9Y4F5 1589 aaPredicted RBP23.93■■□□□ 1.42
SHOX-201ENST00000334060 TONSLQ96HA7 1378 aa23.93■■□□□ 1.42
SHOX-201ENST00000334060 ZNF326Q5BKZ1 582 aaKnown RBP23.92■■□□□ 1.42
SHOX-201ENST00000334060 DCAF11Q8TEB1 546 aa23.91■■□□□ 1.42
SHOX-201ENST00000334060 NLRP1Q9C000 1473 aa23.91■■□□□ 1.42
SHOX-201ENST00000334060 STAG3Q9UJ98 1225 aa23.91■■□□□ 1.42
SHOX-201ENST00000334060 HSPA2P54652 639 aa23.89■■□□□ 1.42
SHOX-201ENST00000334060 NEXMIFQ5QGS0 1516 aa23.88■■□□□ 1.41
SHOX-201ENST00000334060 NBPF8Q3BBV2 869 aa23.87■■□□□ 1.41
SHOX-201ENST00000334060 ADGRF5Q8IZF2 1346 aa23.87■■□□□ 1.41
SHOX-201ENST00000334060 ZNF142P52746 1687 aaPredicted RBP23.86■■□□□ 1.41
SHOX-201ENST00000334060 UHRF1BP1Q6BDS2 1440 aa23.86■■□□□ 1.41
SHOX-201ENST00000334060 IFT172Q9UG01 1749 aa23.85■■□□□ 1.41
SHOX-201ENST00000334060 LTKP29376 864 aa23.85■■□□□ 1.41
SHOX-201ENST00000334060 PPLO60437 1756 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms