RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CHIC2Q9UKJ5 165 aa24.41■■□□□ 1.5
CLN3-201ENST00000333496 KIF15Q9NS87 1388 aa24.4■■□□□ 1.5
CLN3-201ENST00000333496 RRP7BPQ9NSQ0 103 aa24.4■■□□□ 1.5
CLN3-201ENST00000333496 MROH1Q8NDA8 1641 aa24.37■■□□□ 1.49
CLN3-201ENST00000333496 ADGRL2O95490 1459 aa24.37■■□□□ 1.49
CLN3-201ENST00000333496 NCOA1Q15788 1441 aa24.37■■□□□ 1.49
CLN3-201ENST00000333496 KDM5DQ9BY66 1539 aa24.36■■□□□ 1.49
CLN3-201ENST00000333496 FAM135AQ9P2D6 1515 aa24.36■■□□□ 1.49
CLN3-201ENST00000333496 PTPRKQ15262 1439 aa24.35■■□□□ 1.49
CLN3-201ENST00000333496 ANKRD30AQ9BXX3 1397 aa24.35■■□□□ 1.49
CLN3-201ENST00000333496 HSPA2P54652 639 aa24.35■■□□□ 1.49
CLN3-201ENST00000333496 ERBINQ96RT1 1412 aa24.34■■□□□ 1.49
CLN3-201ENST00000333496 NPATQ14207 1427 aa24.33■■□□□ 1.49
CLN3-201ENST00000333496 WASHC2CQ9Y4E1 1318 aa24.32■■□□□ 1.48
CLN3-201ENST00000333496 UHRF1BP1Q6BDS2 1440 aa24.32■■□□□ 1.48
CLN3-201ENST00000333496 ZC3H13Q5T200 1668 aaKnown RBP24.31■■□□□ 1.48
CLN3-201ENST00000333496 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.31■■□□□ 1.48
CLN3-201ENST00000333496 CEP152O94986 1710 aa24.31■■□□□ 1.48
CLN3-201ENST00000333496 DEPDC5O75140 1603 aa24.3■■□□□ 1.48
CLN3-201ENST00000333496 ABCC3O15438 1527 aa24.29■■□□□ 1.48
CLN3-201ENST00000333496 RRBP1Q9P2E9 1410 aaKnown RBP24.28■■□□□ 1.48
CLN3-201ENST00000333496 PRDM15P57071 1507 aaPredicted RBP24.27■■□□□ 1.48
CLN3-201ENST00000333496 PZPP20742 1482 aa24.26■■□□□ 1.47
CLN3-201ENST00000333496 MYO3AQ8NEV4 1616 aa24.26■■□□□ 1.47
CLN3-201ENST00000333496 CFAP65Q6ZU64 1925 aaKnown RBP24.24■■□□□ 1.47
CLN3-201ENST00000333496 FBXO31Q5XUX0 539 aaPredicted RBP24.24■■□□□ 1.47
CLN3-201ENST00000333496 CAMSAP1Q5T5Y3 1602 aa24.23■■□□□ 1.47
CLN3-201ENST00000333496 STRCQ7RTU9 1775 aa24.23■■□□□ 1.47
CLN3-201ENST00000333496 ZNF142P52746 1687 aaPredicted RBP24.22■■□□□ 1.47
CLN3-201ENST00000333496 ITGAEP38570 1179 aa24.21■■□□□ 1.47
CLN3-201ENST00000333496 ANKRD50Q9ULJ7 1429 aa24.21■■□□□ 1.47
CLN3-201ENST00000333496 ROCK1Q13464 1354 aa24.21■■□□□ 1.47
CLN3-201ENST00000333496 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.19■■□□□ 1.46
CLN3-201ENST00000333496 VWDEQ8N2E2 1590 aa24.19■■□□□ 1.46
CLN3-201ENST00000333496 CEP170BQ9Y4F5 1589 aaPredicted RBP24.18■■□□□ 1.46
CLN3-201ENST00000333496 TNRQ92752 1358 aa24.15■■□□□ 1.46
CLN3-201ENST00000333496 SPATA31D1Q6ZQQ2 1576 aa24.14■■□□□ 1.46
CLN3-201ENST00000333496 LMTK2Q8IWU2 1503 aa24.13■■□□□ 1.45
CLN3-201ENST00000333496 KANK1Q14678 1352 aa24.13■■□□□ 1.45
CLN3-201ENST00000333496 ARHGAP31Q2M1Z3 1444 aa24.12■■□□□ 1.45
CLN3-201ENST00000333496 A2ML1A8K2U0 1454 aa24.12■■□□□ 1.45
CLN3-201ENST00000333496 ERVK-7P63135 1459 aa24.12■■□□□ 1.45
CLN3-201ENST00000333496 UNC13BO14795 1591 aa24.11■■□□□ 1.45
CLN3-201ENST00000333496 NLRP1Q9C000 1473 aa24.07■■□□□ 1.44
CLN3-201ENST00000333496 EFCAB6Q5THR3 1501 aa24.06■■□□□ 1.44
CLN3-201ENST00000333496 PLA2R1Q13018 1463 aa24.04■■□□□ 1.44
CLN3-201ENST00000333496 TET3O43151 1660 aa24.04■■□□□ 1.44
CLN3-201ENST00000333496 GCC2Q8IWJ2 1684 aa24.03■■□□□ 1.44
CLN3-201ENST00000333496 UGGT1Q9NYU2 1555 aa24.02■■□□□ 1.44
CLN3-201ENST00000333496 IQGAP3Q86VI3 1631 aa24.02■■□□□ 1.44
CLN3-201ENST00000333496 NAIPQ13075 1403 aa24.01■■□□□ 1.43
CLN3-201ENST00000333496 DMRT2Q9Y5R5 561 aa24■■□□□ 1.43
CLN3-201ENST00000333496 NCKAP5LQ9HCH0 1330 aa23.99■■□□□ 1.43
CLN3-201ENST00000333496 UBR1Q8IWV7 1749 aa23.99■■□□□ 1.43
CLN3-201ENST00000333496 PTPRTO14522 1441 aa23.99■■□□□ 1.43
CLN3-201ENST00000333496 POLR1AO95602 1720 aaPredicted RBP23.98■■□□□ 1.43
CLN3-201ENST00000333496 SYNMO15061 1565 aa23.98■■□□□ 1.43
CLN3-201ENST00000333496 E9PCH4 1651 aa23.97■■□□□ 1.43
CLN3-201ENST00000333496 NOS1P29475 1434 aa23.97■■□□□ 1.43
CLN3-201ENST00000333496 RPRD2Q5VT52 1461 aaKnown RBP23.96■■□□□ 1.43
CLN3-201ENST00000333496 PIK3C2BO00750 1634 aa23.95■■□□□ 1.43
CLN3-201ENST00000333496 NUP155O75694 1391 aa23.95■■□□□ 1.42
CLN3-201ENST00000333496 PKD2Q13563 968 aa23.95■■□□□ 1.42
CLN3-201ENST00000333496 THEMISQ8N1K5 641 aaPredicted RBP23.95■■□□□ 1.42
CLN3-201ENST00000333496 HFM1A2PYH4 1435 aa23.95■■□□□ 1.42
CLN3-201ENST00000333496 NEURL4Q96JN8 1562 aa23.93■■□□□ 1.42
CLN3-201ENST00000333496 IDI1Q13907 227 aa23.9■■□□□ 1.42
CLN3-201ENST00000333496 KDM5AP29375 1690 aaKnown RBP23.9■■□□□ 1.42
CLN3-201ENST00000333496 MYO5BQ9ULV0 1848 aa23.86■■□□□ 1.41
CLN3-201ENST00000333496 ANKLE2Q86XL3 938 aa23.86■■□□□ 1.41
CLN3-201ENST00000333496 SLIT1O75093 1534 aa23.85■■□□□ 1.41
CLN3-201ENST00000333496 MED14O60244 1454 aa23.84■■□□□ 1.41
CLN3-201ENST00000333496 ARHGAP23Q9P227 1491 aa23.84■■□□□ 1.41
CLN3-201ENST00000333496 SLC52A1Q9NWF4 448 aa23.84■■□□□ 1.41
CLN3-201ENST00000333496 LTBP4Q8N2S1 1624 aa23.83■■□□□ 1.41
CLN3-201ENST00000333496 ADGRB3O60242 1522 aa23.82■■□□□ 1.4
CLN3-201ENST00000333496 IQGAP1P46940 1657 aa23.81■■□□□ 1.4
CLN3-201ENST00000333496 SPHKAPQ2M3C7 1700 aa23.81■■□□□ 1.4
CLN3-201ENST00000333496 NPHP4O75161 1426 aaPredicted RBP23.79■■□□□ 1.4
CLN3-201ENST00000333496 LTKP29376 864 aa23.79■■□□□ 1.4
CLN3-201ENST00000333496 CERKQ8TCT0 537 aa23.79■■□□□ 1.4
CLN3-201ENST00000333496 STAG3Q9UJ98 1225 aa23.79■■□□□ 1.4
CLN3-201ENST00000333496 TMEM131LA2VDJ0 1609 aa23.79■■□□□ 1.4
CLN3-201ENST00000333496 SCAF11Q99590 1463 aaKnown RBP23.78■■□□□ 1.4
CLN3-201ENST00000333496 TMEM2Q9UHN6 1383 aa23.78■■□□□ 1.4
CLN3-201ENST00000333496 ZNF335Q9H4Z2 1342 aaPredicted RBP23.78■■□□□ 1.4
CLN3-201ENST00000333496 ILDR1Q86SU0 546 aaPredicted RBP23.77■■□□□ 1.4
CLN3-201ENST00000333496 TRIM52Q96A61 297 aa23.77■■□□□ 1.4
CLN3-201ENST00000333496 TXNDC2Q86VQ3 553 aa23.75■■□□□ 1.39
CLN3-201ENST00000333496 FBXO41Q8TF61 875 aa23.7■■□□□ 1.39
CLN3-201ENST00000333496 EID1Q9Y6B2 187 aa23.7■■□□□ 1.39
CLN3-201ENST00000333496 SETD5Q9C0A6 1442 aa23.7■■□□□ 1.38
CLN3-201ENST00000333496 STRCP1A6NGW2 1772 aa23.69■■□□□ 1.38
CLN3-201ENST00000333496 SLC4A1APQ9BWU0 796 aaKnown RBP23.69■■□□□ 1.38
CLN3-201ENST00000333496 ZFYVE9O95405 1425 aa23.69■■□□□ 1.38
CLN3-201ENST00000333496 TRPM2O94759 1503 aa23.68■■□□□ 1.38
CLN3-201ENST00000333496 CLTCL1P53675 1640 aa23.68■■□□□ 1.38
CLN3-201ENST00000333496 CHGAP10645 457 aaKnown RBP23.66■■□□□ 1.38
CLN3-201ENST00000333496 RIMS2Q9UQ26 1411 aa23.64■■□□□ 1.38
CLN3-201ENST00000333496 KIF1BO60333 1816 aa23.64■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms