RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 ITGAEP38570 1179 aa24.87■■□□□ 1.57
PDLIM1-201ENST00000329399 PPP6R1Q9UPN7 881 aa24.86■■□□□ 1.57
PDLIM1-201ENST00000329399 CLTCQ00610 1675 aaKnown RBP24.86■■□□□ 1.57
PDLIM1-201ENST00000329399 DUOX2Q9NRD8 1548 aa24.85■■□□□ 1.57
PDLIM1-201ENST00000329399 ANKRD30AQ9BXX3 1397 aa24.84■■□□□ 1.57
PDLIM1-201ENST00000329399 WASHC2CQ9Y4E1 1318 aa24.82■■□□□ 1.56
PDLIM1-201ENST00000329399 FBXO31Q5XUX0 539 aaPredicted RBP24.82■■□□□ 1.56
PDLIM1-201ENST00000329399 ADGRL2O95490 1459 aa24.81■■□□□ 1.56
PDLIM1-201ENST00000329399 MROH1Q8NDA8 1641 aa24.8■■□□□ 1.56
PDLIM1-201ENST00000329399 RRBP1Q9P2E9 1410 aaKnown RBP24.79■■□□□ 1.56
PDLIM1-201ENST00000329399 MROH2AA6NES4 1674 aa24.78■■□□□ 1.56
PDLIM1-201ENST00000329399 SETD1BQ9UPS6 1966 aaKnown RBP24.78■■□□□ 1.56
PDLIM1-201ENST00000329399 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP24.78■■□□□ 1.56
PDLIM1-201ENST00000329399 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.77■■□□□ 1.565e-10■□□□□ 9
PDLIM1-201ENST00000329399 RNF17Q9BXT8 1623 aaKnown RBP24.77■■□□□ 1.56
PDLIM1-201ENST00000329399 ERBINQ96RT1 1412 aa24.76■■□□□ 1.55
PDLIM1-201ENST00000329399 EIF2AK4Q9P2K8 1649 aaKnown RBP24.75■■□□□ 1.55
PDLIM1-201ENST00000329399 KDM5DQ9BY66 1539 aa24.75■■□□□ 1.55
PDLIM1-201ENST00000329399 ABCC3O15438 1527 aa24.72■■□□□ 1.55
PDLIM1-201ENST00000329399 NPATQ14207 1427 aa24.72■■□□□ 1.55
PDLIM1-201ENST00000329399 UHRF1BP1Q6BDS2 1440 aa24.7■■□□□ 1.55
PDLIM1-201ENST00000329399 ANKRD50Q9ULJ7 1429 aa24.7■■□□□ 1.55
PDLIM1-201ENST00000329399 PREX1Q8TCU6 1659 aa24.7■■□□□ 1.54
PDLIM1-201ENST00000329399 ROCK1Q13464 1354 aa24.7■■□□□ 1.54
PDLIM1-201ENST00000329399 PZPP20742 1482 aa24.67■■□□□ 1.54
PDLIM1-201ENST00000329399 PRDM15P57071 1507 aaPredicted RBP24.65■■□□□ 1.54
PDLIM1-201ENST00000329399 FAM135AQ9P2D6 1515 aa24.65■■□□□ 1.54
PDLIM1-201ENST00000329399 CEP152O94986 1710 aa24.65■■□□□ 1.54
PDLIM1-201ENST00000329399 DEPDC5O75140 1603 aa24.65■■□□□ 1.54
PDLIM1-201ENST00000329399 TNRQ92752 1358 aa24.62■■□□□ 1.53
PDLIM1-201ENST00000329399 CFAP65Q6ZU64 1925 aaKnown RBP24.61■■□□□ 1.53
PDLIM1-201ENST00000329399 VWDEQ8N2E2 1590 aa24.6■■□□□ 1.53
PDLIM1-201ENST00000329399 CAMSAP1Q5T5Y3 1602 aa24.58■■□□□ 1.53
PDLIM1-201ENST00000329399 ZC3H13Q5T200 1668 aaKnown RBP24.58■■□□□ 1.52
PDLIM1-201ENST00000329399 KANK1Q14678 1352 aa24.58■■□□□ 1.52
PDLIM1-201ENST00000329399 MYO3AQ8NEV4 1616 aa24.57■■□□□ 1.52
PDLIM1-201ENST00000329399 STRCQ7RTU9 1775 aa24.56■■□□□ 1.52
PDLIM1-201ENST00000329399 ERVK-7P63135 1459 aa24.55■■□□□ 1.52
PDLIM1-201ENST00000329399 ARHGAP31Q2M1Z3 1444 aa24.55■■□□□ 1.52
PDLIM1-201ENST00000329399 LMTK2Q8IWU2 1503 aa24.54■■□□□ 1.52
PDLIM1-201ENST00000329399 CEP170BQ9Y4F5 1589 aaPredicted RBP24.53■■□□□ 1.52
PDLIM1-201ENST00000329399 NAIPQ13075 1403 aa24.53■■□□□ 1.52
PDLIM1-201ENST00000329399 SPATA31D1Q6ZQQ2 1576 aa24.53■■□□□ 1.52
PDLIM1-201ENST00000329399 NCKAP5LQ9HCH0 1330 aa24.52■■□□□ 1.52
PDLIM1-201ENST00000329399 A2ML1A8K2U0 1454 aa24.52■■□□□ 1.52
PDLIM1-201ENST00000329399 ZNF142P52746 1687 aaPredicted RBP24.49■■□□□ 1.51
PDLIM1-201ENST00000329399 HRCP23327 699 aa24.49■■□□□ 1.51
PDLIM1-201ENST00000329399 NUP155O75694 1391 aa24.49■■□□□ 1.51
PDLIM1-201ENST00000329399 UNC13BO14795 1591 aa24.48■■□□□ 1.51
PDLIM1-201ENST00000329399 ZEB1P37275 1124 aaPredicted RBP24.48■■□□□ 1.51
PDLIM1-201ENST00000329399 EFCAB6Q5THR3 1501 aa24.46■■□□□ 1.51
PDLIM1-201ENST00000329399 NLRP1Q9C000 1473 aa24.45■■□□□ 1.5
PDLIM1-201ENST00000329399 HFM1A2PYH4 1435 aa24.45■■□□□ 1.5
PDLIM1-201ENST00000329399 IDI1Q13907 227 aa24.45■■□□□ 1.5
PDLIM1-201ENST00000329399 NOS1P29475 1434 aa24.42■■□□□ 1.5
PDLIM1-201ENST00000329399 THEMISQ8N1K5 641 aaPredicted RBP24.41■■□□□ 1.5
PDLIM1-201ENST00000329399 SYNMO15061 1565 aa24.41■■□□□ 1.5
PDLIM1-201ENST00000329399 UGGT1Q9NYU2 1555 aa24.41■■□□□ 1.5
PDLIM1-201ENST00000329399 TET3O43151 1660 aa24.39■■□□□ 1.5
PDLIM1-201ENST00000329399 IQGAP3Q86VI3 1631 aa24.39■■□□□ 1.49
PDLIM1-201ENST00000329399 PLA2R1Q13018 1463 aa24.39■■□□□ 1.49
PDLIM1-201ENST00000329399 DMRT2Q9Y5R5 561 aa24.38■■□□□ 1.49
PDLIM1-201ENST00000329399 GCC2Q8IWJ2 1684 aa24.37■■□□□ 1.49
PDLIM1-201ENST00000329399 PTPRTO14522 1441 aa24.37■■□□□ 1.49
PDLIM1-201ENST00000329399 PKD2Q13563 968 aa24.37■■□□□ 1.49
PDLIM1-201ENST00000329399 E9PCH4 1651 aa24.36■■□□□ 1.49
PDLIM1-201ENST00000329399 TRIM52Q96A61 297 aa24.35■■□□□ 1.49
PDLIM1-201ENST00000329399 RPRD2Q5VT52 1461 aaKnown RBP24.34■■□□□ 1.49
PDLIM1-201ENST00000329399 LTKP29376 864 aa24.33■■□□□ 1.49
PDLIM1-201ENST00000329399 ANKLE2Q86XL3 938 aa24.33■■□□□ 1.49
PDLIM1-201ENST00000329399 PIK3C2BO00750 1634 aa24.33■■□□□ 1.49
PDLIM1-201ENST00000329399 UBR1Q8IWV7 1749 aa24.32■■□□□ 1.48
PDLIM1-201ENST00000329399 SLC52A1Q9NWF4 448 aa24.31■■□□□ 1.48
PDLIM1-201ENST00000329399 NEURL4Q96JN8 1562 aa24.3■■□□□ 1.48
PDLIM1-201ENST00000329399 STAG3Q9UJ98 1225 aa24.28■■□□□ 1.48
PDLIM1-201ENST00000329399 ZNF335Q9H4Z2 1342 aaPredicted RBP24.27■■□□□ 1.48
PDLIM1-201ENST00000329399 TXNDC2Q86VQ3 553 aa24.26■■□□□ 1.47
PDLIM1-201ENST00000329399 FOXD1Q16676 465 aa24.26■■□□□ 1.47
PDLIM1-201ENST00000329399 ARHGAP23Q9P227 1491 aa24.25■■□□□ 1.47
PDLIM1-201ENST00000329399 TMEM2Q9UHN6 1383 aa24.25■■□□□ 1.47
PDLIM1-201ENST00000329399 SETD5Q9C0A6 1442 aa24.24■■□□□ 1.47
PDLIM1-201ENST00000329399 CCER1Q8TC90 406 aaPredicted RBP24.24■■□□□ 1.47
PDLIM1-201ENST00000329399 SLC4A1APQ9BWU0 796 aaKnown RBP24.24■■□□□ 1.47
PDLIM1-201ENST00000329399 CERKQ8TCT0 537 aa24.23■■□□□ 1.47
PDLIM1-201ENST00000329399 SLIT1O75093 1534 aa24.22■■□□□ 1.47
PDLIM1-201ENST00000329399 NPHP4O75161 1426 aaPredicted RBP24.22■■□□□ 1.47
PDLIM1-201ENST00000329399 MED14O60244 1454 aa24.22■■□□□ 1.47
PDLIM1-201ENST00000329399 POLR1AO95602 1720 aaPredicted RBP24.21■■□□□ 1.47
PDLIM1-201ENST00000329399 CHGAP10645 457 aaKnown RBP24.21■■□□□ 1.47
PDLIM1-201ENST00000329399 LTBP4Q8N2S1 1624 aa24.21■■□□□ 1.47
PDLIM1-201ENST00000329399 ILDR1Q86SU0 546 aaPredicted RBP24.2■■□□□ 1.47
PDLIM1-201ENST00000329399 SENP3Q9H4L4 574 aaPredicted RBP24.2■■□□□ 1.47
PDLIM1-201ENST00000329399 ADGRB3O60242 1522 aa24.2■■□□□ 1.46
PDLIM1-201ENST00000329399 SCAF11Q99590 1463 aaKnown RBP24.19■■□□□ 1.46
PDLIM1-201ENST00000329399 RAB3GAP2Q9H2M9 1393 aa24.19■■□□□ 1.46
PDLIM1-201ENST00000329399 ACIN1Q9UKV3 1341 aaKnown RBP24.19■■□□□ 1.46
PDLIM1-201ENST00000329399 MPHOSPH9Q99550 1183 aa24.19■■□□□ 1.46
PDLIM1-201ENST00000329399 CLSPNQ9HAW4 1339 aa24.18■■□□□ 1.46
PDLIM1-201ENST00000329399 NUTM2DQ5VT03 806 aaPredicted RBP24.18■■□□□ 1.46
PDLIM1-201ENST00000329399 MYO5BQ9ULV0 1848 aa24.17■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms