RNA–Protein interactions for RNA: ENST00000323959.8

CSTF3-201, Transcript of cleavage stimulation factor subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSTF3, Length 2,797 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-201ENST00000323959 MEX3CQ5U5Q3 659 aaKnown RBP11.85□□□□□ -0.51
CSTF3-201ENST00000323959 ITSN2Q9NZM3 1697 aa11.85□□□□□ -0.51
CSTF3-201ENST00000323959 SAMD9Q5K651 1589 aa11.85□□□□□ -0.51
CSTF3-201ENST00000323959 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.84□□□□□ -0.51
CSTF3-201ENST00000323959 HNRNPUL2Q1KMD3 747 aaKnown RBP11.84□□□□□ -0.51
CSTF3-201ENST00000323959 ATP7AQ04656 1500 aa11.84□□□□□ -0.51
CSTF3-201ENST00000323959 ZC3H13Q5T200 1668 aaKnown RBP11.84□□□□□ -0.51
CSTF3-201ENST00000323959 KIDINS220Q9ULH0 1771 aa11.83□□□□□ -0.52
CSTF3-201ENST00000323959 FAM135AQ9P2D6 1515 aa11.82□□□□□ -0.52
CSTF3-201ENST00000323959 NLRP1Q9C000 1473 aa11.81□□□□□ -0.52
CSTF3-201ENST00000323959 THEMISQ8N1K5 641 aaPredicted RBP11.8□□□□□ -0.52
CSTF3-201ENST00000323959 RBM6P78332 1123 aaKnown RBP11.79□□□□□ -0.52
CSTF3-201ENST00000323959 TNRQ92752 1358 aa11.79□□□□□ -0.52
CSTF3-201ENST00000323959 MYT1LQ9UL68 1186 aa11.79□□□□□ -0.52
CSTF3-201ENST00000323959 PLXNC1O60486 1568 aa11.78□□□□□ -0.52
CSTF3-201ENST00000323959 SENP3-EIF4A1A0A087X0R7 540 aa11.78□□□□□ -0.52
CSTF3-201ENST00000323959 NUTM2BA6NNL0 878 aaPredicted RBP11.78□□□□□ -0.52
CSTF3-201ENST00000323959 NUTM2EB1AL46 878 aaPredicted RBP11.78□□□□□ -0.52
CSTF3-201ENST00000323959 NUTM2DQ5VT03 806 aaPredicted RBP11.78□□□□□ -0.52
CSTF3-201ENST00000323959 NUTM2AQ8IVF1 878 aaPredicted RBP11.78□□□□□ -0.52
CSTF3-201ENST00000323959 AFAP1Q8N556 730 aa11.77□□□□□ -0.53
CSTF3-201ENST00000323959 ABCC3O15438 1527 aa11.77□□□□□ -0.53
CSTF3-201ENST00000323959 ARHGAP5Q13017 1502 aa11.75□□□□□ -0.53
CSTF3-201ENST00000323959 AHDC1Q5TGY3 1603 aaPredicted RBP11.75□□□□□ -0.53
CSTF3-201ENST00000323959 UGGT1Q9NYU2 1555 aa11.75□□□□□ -0.53
CSTF3-201ENST00000323959 MAP3K1Q13233 1512 aa11.74□□□□□ -0.53
CSTF3-201ENST00000323959 SLC34A2O95436 690 aa11.73□□□□□ -0.53
CSTF3-201ENST00000323959 NGLY1Q96IV0 654 aa11.73□□□□□ -0.53
CSTF3-201ENST00000323959 PZPP20742 1482 aa11.72□□□□□ -0.53
CSTF3-201ENST00000323959 AFF2P51816 1311 aa11.72□□□□□ -0.53
CSTF3-201ENST00000323959 PCDH10Q9P2E7 1040 aa11.72□□□□□ -0.53
CSTF3-201ENST00000323959 TIAM1Q13009 1591 aa11.71□□□□□ -0.54
CSTF3-201ENST00000323959 DIP2AQ14689 1571 aa11.68□□□□□ -0.54
CSTF3-201ENST00000323959 SAMD9LQ8IVG5 1584 aa11.68□□□□□ -0.54
CSTF3-201ENST00000323959 BCL9LQ86UU0 1499 aa11.67□□□□□ -0.54
CSTF3-201ENST00000323959 NKTRP30414 1462 aaKnown RBP11.67□□□□□ -0.54
CSTF3-201ENST00000323959 TMEM94Q12767 1356 aa11.67□□□□□ -0.54
CSTF3-201ENST00000323959 A2MP01023 1474 aa11.66□□□□□ -0.54
CSTF3-201ENST00000323959 BLMP54132 1417 aaPredicted RBP11.66□□□□□ -0.54
CSTF3-201ENST00000323959 SCAF11Q99590 1463 aaKnown RBP11.66□□□□□ -0.54
CSTF3-201ENST00000323959 QTRT2Q9H974 415 aaKnown RBP11.66□□□□□ -0.54
CSTF3-201ENST00000323959 PREX2Q70Z35 1606 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 UNC13BO14795 1591 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 CDC42BPBQ9Y5S2 1711 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 MIA2Q96PC5 1412 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 ADGBQ8N7X0 1667 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 C1QTNF8P60827 252 aa11.65□□□□□ -0.54
CSTF3-201ENST00000323959 KDM5AP29375 1690 aaKnown RBP11.65□□□□□ -0.55
CSTF3-201ENST00000323959 PRDM15P57071 1507 aaPredicted RBP11.64□□□□□ -0.55
CSTF3-201ENST00000323959 MSH6P52701 1360 aa11.64□□□□□ -0.55
CSTF3-201ENST00000323959 INO80Q9ULG1 1556 aaPredicted RBP11.63□□□□□ -0.55
CSTF3-201ENST00000323959 HRCP23327 699 aa11.62□□□□□ -0.55
CSTF3-201ENST00000323959 DCAF8L1A6NGE4 600 aa11.62□□□□□ -0.55
CSTF3-201ENST00000323959 P3H3Q8IVL6 736 aa11.62□□□□□ -0.55
CSTF3-201ENST00000323959 SLAIN2Q9P270 581 aa11.61□□□□□ -0.55
CSTF3-201ENST00000323959 ARHGAP23Q9P227 1491 aa11.61□□□□□ -0.55
CSTF3-201ENST00000323959 SLIT1O75093 1534 aa11.61□□□□□ -0.55
CSTF3-201ENST00000323959 PRXQ9BXM0 1461 aa11.61□□□□□ -0.55
CSTF3-201ENST00000323959 SPHKAPQ2M3C7 1700 aa11.59□□□□□ -0.55
CSTF3-201ENST00000323959 KCNA6P17658 529 aa11.58□□□□□ -0.56
CSTF3-201ENST00000323959 UBR1Q8IWV7 1749 aa11.58□□□□□ -0.56
CSTF3-201ENST00000323959 CLIP1P30622 1438 aa11.57□□□□□ -0.56
CSTF3-201ENST00000323959 NCOA3Q9Y6Q9 1424 aa11.57□□□□□ -0.56
CSTF3-201ENST00000323959 TROQ12816 1431 aaPredicted RBP11.56□□□□□ -0.56
CSTF3-201ENST00000323959 MROH1Q8NDA8 1641 aa11.56□□□□□ -0.56
CSTF3-201ENST00000323959 ATRNO75882 1429 aa11.56□□□□□ -0.56
CSTF3-201ENST00000323959 SETD5Q9C0A6 1442 aa11.56□□□□□ -0.56
CSTF3-201ENST00000323959 SPAG9O60271 1321 aaKnown RBP11.55□□□□□ -0.56
CSTF3-201ENST00000323959 CDK11AQ9UQ88 783 aaPredicted RBP11.55□□□□□ -0.56
CSTF3-201ENST00000323959 GGT6Q6P531 493 aa11.54□□□□□ -0.56
CSTF3-201ENST00000323959 ZNF784Q8NCA9 323 aaPredicted RBP11.54□□□□□ -0.56
CSTF3-201ENST00000323959 TRPC5Q9UL62 973 aaPredicted RBP11.54□□□□□ -0.56
CSTF3-201ENST00000323959 PROSER2Q86WR7 435 aaPredicted RBP11.54□□□□□ -0.56
CSTF3-201ENST00000323959 SF3B2Q13435 895 aaKnown RBP11.53□□□□□ -0.56
CSTF3-201ENST00000323959 FBXO31Q5XUX0 539 aaPredicted RBP11.53□□□□□ -0.56
CSTF3-201ENST00000323959 RTEL1-TNFRSF6BF6WH68 1400 aa11.53□□□□□ -0.56
CSTF3-201ENST00000323959 NINLQ9Y2I6 1382 aa11.52□□□□□ -0.57
CSTF3-201ENST00000323959 CAMSAP2Q08AD1 1489 aa11.52□□□□□ -0.57
CSTF3-201ENST00000323959 NCOA2Q15596 1464 aa11.52□□□□□ -0.57
CSTF3-201ENST00000323959 GPATCH8Q9UKJ3 1502 aaKnown RBP11.5□□□□□ -0.57
CSTF3-201ENST00000323959 PLEKHH2Q8IVE3 1493 aa11.5□□□□□ -0.57
CSTF3-201ENST00000323959 C8orf37Q96NL8 207 aa11.5□□□□□ -0.57
CSTF3-201ENST00000323959 RALGAPBQ86X10 1494 aa11.49□□□□□ -0.57
CSTF3-201ENST00000323959 SRCAPQ6ZRS2 3230 aa11.49□□□□□ -0.57
CSTF3-201ENST00000323959 PTCH1Q13635 1447 aa11.48□□□□□ -0.57
CSTF3-201ENST00000323959 KIAA1107Q9UPP5 1409 aa11.48□□□□□ -0.57
CSTF3-201ENST00000323959 SYCP2Q9BX26 1530 aa11.47□□□□□ -0.57
CSTF3-201ENST00000323959 PSDA5PKW4 1024 aaPredicted RBP11.47□□□□□ -0.57
CSTF3-201ENST00000323959 CDC42BPAQ5VT25 1732 aa11.46□□□□□ -0.57
CSTF3-201ENST00000323959 EID1Q9Y6B2 187 aa11.46□□□□□ -0.57
CSTF3-201ENST00000323959 ERVK-7P63135 1459 aa11.46□□□□□ -0.58
CSTF3-201ENST00000323959 TXNDC2Q86VQ3 553 aa11.45□□□□□ -0.58
CSTF3-201ENST00000323959 TET3O43151 1660 aa11.45□□□□□ -0.58
CSTF3-201ENST00000323959 DEFB132Q7Z7B7 95 aa11.45□□□□□ -0.58
CSTF3-201ENST00000323959 PNPLA6Q8IY17 1366 aa11.44□□□□□ -0.58
CSTF3-201ENST00000323959 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.44□□□□□ -0.58
CSTF3-201ENST00000323959 USP21Q9UK80 565 aa11.44□□□□□ -0.58
CSTF3-201ENST00000323959 MAST1Q9Y2H9 1570 aa11.44□□□□□ -0.58
CSTF3-201ENST00000323959 FNBP4Q8N3X1 1017 aaPredicted RBP11.43□□□□□ -0.58
CSTF3-201ENST00000323959 LTKP29376 864 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 124.7 ms